data_7QV5 # _entry.id 7QV5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7QV5 pdb_00007qv5 10.2210/pdb7qv5/pdb WWPDB D_1292120113 ? ? EMDB EMD-14167 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-29 2 'Structure model' 1 1 2022-08-10 3 'Structure model' 1 2 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' em_admin 6 3 'Structure model' pdbx_entry_details 7 3 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' 13 2 'Structure model' '_citation_author.name' 14 3 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7QV5 _pdbx_database_status.recvd_initial_deposition_date 2022-01-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Amyloid fibril from the antimicrobial peptide uperin 3.5' _pdbx_database_related.db_id EMD-14167 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 mlandau@technion.ac.il Meytal Landau ? 'principal investigator/group leader' 0000-0002-1743-3430 3 kay.gruenewald@cssb-hamburg.de Kay Gruenewald ? 'principal investigator/group leader' 0000-0002-4788-2691 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Buecker, R.' 1 0000-0001-7654-4707 'Seuring, C.' 2 0000-0003-1000-0859 'Cazey, C.' 3 ? 'Veith, K.' 4 0000-0001-7454-5490 'Garcia-Alai, M.' 5 0000-0002-5200-7816 'Gruenewald, K.' 6 0000-0002-4788-2691 'Landau, M.' 7 0000-0002-1743-3430 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 4356 _citation.page_last 4356 _citation.title 'The Cryo-EM structures of two amphibian antimicrobial cross-beta amyloid fibrils.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-022-32039-z _citation.pdbx_database_id_PubMed 35896552 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bucker, R.' 1 ? primary 'Seuring, C.' 2 0000-0003-1000-0859 primary 'Cazey, C.' 3 ? primary 'Veith, K.' 4 ? primary 'Garcia-Alai, M.' 5 0000-0002-5200-7816 primary 'Grunewald, K.' 6 0000-0002-4788-2691 primary 'Landau, M.' 7 0000-0002-1743-3430 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Uperin-3.5 _entity.formula_weight 1782.181 _entity.pdbx_number_of_molecules 27 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GVGDLIRKAVSVIKNIV(NH2)' _entity_poly.pdbx_seq_one_letter_code_can GVGDLIRKAVSVIKNIVX _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 GLY n 1 4 ASP n 1 5 LEU n 1 6 ILE n 1 7 ARG n 1 8 LYS n 1 9 ALA n 1 10 VAL n 1 11 SER n 1 12 VAL n 1 13 ILE n 1 14 LYS n 1 15 ASN n 1 16 ILE n 1 17 VAL n 1 18 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 18 _pdbx_entity_src_syn.organism_scientific 'Uperoleia mjobergii' _pdbx_entity_src_syn.organism_common_name ;Mjoberg's toadlet ; _pdbx_entity_src_syn.ncbi_taxonomy_id 104954 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 NH2 18 18 18 NH2 NH2 A . n B 1 1 GLY 1 1 ? ? ? B . n B 1 2 VAL 2 2 ? ? ? B . n B 1 3 GLY 3 3 ? ? ? B . n B 1 4 ASP 4 4 4 ASP ASP B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 ARG 7 7 7 ARG ARG B . n B 1 8 LYS 8 8 8 LYS LYS B . n B 1 9 ALA 9 9 9 ALA ALA B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ASN 15 15 15 ASN ASN B . n B 1 16 ILE 16 16 16 ILE ILE B . n B 1 17 VAL 17 17 17 VAL VAL B . n B 1 18 NH2 18 18 18 NH2 NH2 B . n C 1 1 GLY 1 1 1 GLY GLY C . n C 1 2 VAL 2 2 2 VAL VAL C . n C 1 3 GLY 3 3 3 GLY GLY C . n C 1 4 ASP 4 4 4 ASP ASP C . n C 1 5 LEU 5 5 5 LEU LEU C . n C 1 6 ILE 6 6 6 ILE ILE C . n C 1 7 ARG 7 7 7 ARG ARG C . n C 1 8 LYS 8 8 ? ? ? C . n C 1 9 ALA 9 9 ? ? ? C . n C 1 10 VAL 10 10 ? ? ? C . n C 1 11 SER 11 11 ? ? ? C . n C 1 12 VAL 12 12 ? ? ? C . n C 1 13 ILE 13 13 ? ? ? C . n C 1 14 LYS 14 14 ? ? ? C . n C 1 15 ASN 15 15 ? ? ? C . n C 1 16 ILE 16 16 ? ? ? C . n C 1 17 VAL 17 17 ? ? ? C . n C 1 18 NH2 18 18 ? ? ? C . n D 1 1 GLY 1 1 1 GLY GLY D . n D 1 2 VAL 2 2 2 VAL VAL D . n D 1 3 GLY 3 3 3 GLY GLY D . n D 1 4 ASP 4 4 4 ASP ASP D . n D 1 5 LEU 5 5 5 LEU LEU D . n D 1 6 ILE 6 6 6 ILE ILE D . n D 1 7 ARG 7 7 7 ARG ARG D . n D 1 8 LYS 8 8 8 LYS LYS D . n D 1 9 ALA 9 9 9 ALA ALA D . n D 1 10 VAL 10 10 10 VAL VAL D . n D 1 11 SER 11 11 11 SER SER D . n D 1 12 VAL 12 12 12 VAL VAL D . n D 1 13 ILE 13 13 13 ILE ILE D . n D 1 14 LYS 14 14 14 LYS LYS D . n D 1 15 ASN 15 15 15 ASN ASN D . n D 1 16 ILE 16 16 16 ILE ILE D . n D 1 17 VAL 17 17 17 VAL VAL D . n D 1 18 NH2 18 18 18 NH2 NH2 D . n E 1 1 GLY 1 1 ? ? ? E . n E 1 2 VAL 2 2 ? ? ? E . n E 1 3 GLY 3 3 ? ? ? E . n E 1 4 ASP 4 4 4 ASP ASP E . n E 1 5 LEU 5 5 5 LEU LEU E . n E 1 6 ILE 6 6 6 ILE ILE E . n E 1 7 ARG 7 7 7 ARG ARG E . n E 1 8 LYS 8 8 8 LYS LYS E . n E 1 9 ALA 9 9 9 ALA ALA E . n E 1 10 VAL 10 10 10 VAL VAL E . n E 1 11 SER 11 11 11 SER SER E . n E 1 12 VAL 12 12 12 VAL VAL E . n E 1 13 ILE 13 13 13 ILE ILE E . n E 1 14 LYS 14 14 14 LYS LYS E . n E 1 15 ASN 15 15 15 ASN ASN E . n E 1 16 ILE 16 16 16 ILE ILE E . n E 1 17 VAL 17 17 17 VAL VAL E . n E 1 18 NH2 18 18 18 NH2 NH2 E . n F 1 1 GLY 1 1 1 GLY GLY F . n F 1 2 VAL 2 2 2 VAL VAL F . n F 1 3 GLY 3 3 3 GLY GLY F . n F 1 4 ASP 4 4 4 ASP ASP F . n F 1 5 LEU 5 5 5 LEU LEU F . n F 1 6 ILE 6 6 6 ILE ILE F . n F 1 7 ARG 7 7 7 ARG ARG F . n F 1 8 LYS 8 8 ? ? ? F . n F 1 9 ALA 9 9 ? ? ? F . n F 1 10 VAL 10 10 ? ? ? F . n F 1 11 SER 11 11 ? ? ? F . n F 1 12 VAL 12 12 ? ? ? F . n F 1 13 ILE 13 13 ? ? ? F . n F 1 14 LYS 14 14 ? ? ? F . n F 1 15 ASN 15 15 ? ? ? F . n F 1 16 ILE 16 16 ? ? ? F . n F 1 17 VAL 17 17 ? ? ? F . n F 1 18 NH2 18 18 ? ? ? F . n G 1 1 GLY 1 1 1 GLY GLY G . n G 1 2 VAL 2 2 2 VAL VAL G . n G 1 3 GLY 3 3 3 GLY GLY G . n G 1 4 ASP 4 4 4 ASP ASP G . n G 1 5 LEU 5 5 5 LEU LEU G . n G 1 6 ILE 6 6 6 ILE ILE G . n G 1 7 ARG 7 7 7 ARG ARG G . n G 1 8 LYS 8 8 8 LYS LYS G . n G 1 9 ALA 9 9 9 ALA ALA G . n G 1 10 VAL 10 10 10 VAL VAL G . n G 1 11 SER 11 11 11 SER SER G . n G 1 12 VAL 12 12 12 VAL VAL G . n G 1 13 ILE 13 13 13 ILE ILE G . n G 1 14 LYS 14 14 14 LYS LYS G . n G 1 15 ASN 15 15 15 ASN ASN G . n G 1 16 ILE 16 16 16 ILE ILE G . n G 1 17 VAL 17 17 17 VAL VAL G . n G 1 18 NH2 18 18 18 NH2 NH2 G . n H 1 1 GLY 1 1 ? ? ? H . n H 1 2 VAL 2 2 ? ? ? H . n H 1 3 GLY 3 3 ? ? ? H . n H 1 4 ASP 4 4 4 ASP ASP H . n H 1 5 LEU 5 5 5 LEU LEU H . n H 1 6 ILE 6 6 6 ILE ILE H . n H 1 7 ARG 7 7 7 ARG ARG H . n H 1 8 LYS 8 8 8 LYS LYS H . n H 1 9 ALA 9 9 9 ALA ALA H . n H 1 10 VAL 10 10 10 VAL VAL H . n H 1 11 SER 11 11 11 SER SER H . n H 1 12 VAL 12 12 12 VAL VAL H . n H 1 13 ILE 13 13 13 ILE ILE H . n H 1 14 LYS 14 14 14 LYS LYS H . n H 1 15 ASN 15 15 15 ASN ASN H . n H 1 16 ILE 16 16 16 ILE ILE H . n H 1 17 VAL 17 17 17 VAL VAL H . n H 1 18 NH2 18 18 18 NH2 NH2 H . n I 1 1 GLY 1 1 1 GLY GLY I . n I 1 2 VAL 2 2 2 VAL VAL I . n I 1 3 GLY 3 3 3 GLY GLY I . n I 1 4 ASP 4 4 4 ASP ASP I . n I 1 5 LEU 5 5 5 LEU LEU I . n I 1 6 ILE 6 6 6 ILE ILE I . n I 1 7 ARG 7 7 7 ARG ARG I . n I 1 8 LYS 8 8 ? ? ? I . n I 1 9 ALA 9 9 ? ? ? I . n I 1 10 VAL 10 10 ? ? ? I . n I 1 11 SER 11 11 ? ? ? I . n I 1 12 VAL 12 12 ? ? ? I . n I 1 13 ILE 13 13 ? ? ? I . n I 1 14 LYS 14 14 ? ? ? I . n I 1 15 ASN 15 15 ? ? ? I . n I 1 16 ILE 16 16 ? ? ? I . n I 1 17 VAL 17 17 ? ? ? I . n I 1 18 NH2 18 18 ? ? ? I . n J 1 1 GLY 1 1 1 GLY GLY J . n J 1 2 VAL 2 2 2 VAL VAL J . n J 1 3 GLY 3 3 3 GLY GLY J . n J 1 4 ASP 4 4 4 ASP ASP J . n J 1 5 LEU 5 5 5 LEU LEU J . n J 1 6 ILE 6 6 6 ILE ILE J . n J 1 7 ARG 7 7 7 ARG ARG J . n J 1 8 LYS 8 8 8 LYS LYS J . n J 1 9 ALA 9 9 9 ALA ALA J . n J 1 10 VAL 10 10 10 VAL VAL J . n J 1 11 SER 11 11 11 SER SER J . n J 1 12 VAL 12 12 12 VAL VAL J . n J 1 13 ILE 13 13 13 ILE ILE J . n J 1 14 LYS 14 14 14 LYS LYS J . n J 1 15 ASN 15 15 15 ASN ASN J . n J 1 16 ILE 16 16 16 ILE ILE J . n J 1 17 VAL 17 17 17 VAL VAL J . n J 1 18 NH2 18 18 18 NH2 NH2 J . n K 1 1 GLY 1 1 ? ? ? K . n K 1 2 VAL 2 2 ? ? ? K . n K 1 3 GLY 3 3 ? ? ? K . n K 1 4 ASP 4 4 4 ASP ASP K . n K 1 5 LEU 5 5 5 LEU LEU K . n K 1 6 ILE 6 6 6 ILE ILE K . n K 1 7 ARG 7 7 7 ARG ARG K . n K 1 8 LYS 8 8 8 LYS LYS K . n K 1 9 ALA 9 9 9 ALA ALA K . n K 1 10 VAL 10 10 10 VAL VAL K . n K 1 11 SER 11 11 11 SER SER K . n K 1 12 VAL 12 12 12 VAL VAL K . n K 1 13 ILE 13 13 13 ILE ILE K . n K 1 14 LYS 14 14 14 LYS LYS K . n K 1 15 ASN 15 15 15 ASN ASN K . n K 1 16 ILE 16 16 16 ILE ILE K . n K 1 17 VAL 17 17 17 VAL VAL K . n K 1 18 NH2 18 18 18 NH2 NH2 K . n L 1 1 GLY 1 1 1 GLY GLY L . n L 1 2 VAL 2 2 2 VAL VAL L . n L 1 3 GLY 3 3 3 GLY GLY L . n L 1 4 ASP 4 4 4 ASP ASP L . n L 1 5 LEU 5 5 5 LEU LEU L . n L 1 6 ILE 6 6 6 ILE ILE L . n L 1 7 ARG 7 7 7 ARG ARG L . n L 1 8 LYS 8 8 ? ? ? L . n L 1 9 ALA 9 9 ? ? ? L . n L 1 10 VAL 10 10 ? ? ? L . n L 1 11 SER 11 11 ? ? ? L . n L 1 12 VAL 12 12 ? ? ? L . n L 1 13 ILE 13 13 ? ? ? L . n L 1 14 LYS 14 14 ? ? ? L . n L 1 15 ASN 15 15 ? ? ? L . n L 1 16 ILE 16 16 ? ? ? L . n L 1 17 VAL 17 17 ? ? ? L . n L 1 18 NH2 18 18 ? ? ? L . n M 1 1 GLY 1 1 1 GLY GLY M . n M 1 2 VAL 2 2 2 VAL VAL M . n M 1 3 GLY 3 3 3 GLY GLY M . n M 1 4 ASP 4 4 4 ASP ASP M . n M 1 5 LEU 5 5 5 LEU LEU M . n M 1 6 ILE 6 6 6 ILE ILE M . n M 1 7 ARG 7 7 7 ARG ARG M . n M 1 8 LYS 8 8 8 LYS LYS M . n M 1 9 ALA 9 9 9 ALA ALA M . n M 1 10 VAL 10 10 10 VAL VAL M . n M 1 11 SER 11 11 11 SER SER M . n M 1 12 VAL 12 12 12 VAL VAL M . n M 1 13 ILE 13 13 13 ILE ILE M . n M 1 14 LYS 14 14 14 LYS LYS M . n M 1 15 ASN 15 15 15 ASN ASN M . n M 1 16 ILE 16 16 16 ILE ILE M . n M 1 17 VAL 17 17 17 VAL VAL M . n M 1 18 NH2 18 18 18 NH2 NH2 M . n N 1 1 GLY 1 1 ? ? ? N . n N 1 2 VAL 2 2 ? ? ? N . n N 1 3 GLY 3 3 ? ? ? N . n N 1 4 ASP 4 4 4 ASP ASP N . n N 1 5 LEU 5 5 5 LEU LEU N . n N 1 6 ILE 6 6 6 ILE ILE N . n N 1 7 ARG 7 7 7 ARG ARG N . n N 1 8 LYS 8 8 8 LYS LYS N . n N 1 9 ALA 9 9 9 ALA ALA N . n N 1 10 VAL 10 10 10 VAL VAL N . n N 1 11 SER 11 11 11 SER SER N . n N 1 12 VAL 12 12 12 VAL VAL N . n N 1 13 ILE 13 13 13 ILE ILE N . n N 1 14 LYS 14 14 14 LYS LYS N . n N 1 15 ASN 15 15 15 ASN ASN N . n N 1 16 ILE 16 16 16 ILE ILE N . n N 1 17 VAL 17 17 17 VAL VAL N . n N 1 18 NH2 18 18 18 NH2 NH2 N . n O 1 1 GLY 1 1 1 GLY GLY O . n O 1 2 VAL 2 2 2 VAL VAL O . n O 1 3 GLY 3 3 3 GLY GLY O . n O 1 4 ASP 4 4 4 ASP ASP O . n O 1 5 LEU 5 5 5 LEU LEU O . n O 1 6 ILE 6 6 6 ILE ILE O . n O 1 7 ARG 7 7 7 ARG ARG O . n O 1 8 LYS 8 8 ? ? ? O . n O 1 9 ALA 9 9 ? ? ? O . n O 1 10 VAL 10 10 ? ? ? O . n O 1 11 SER 11 11 ? ? ? O . n O 1 12 VAL 12 12 ? ? ? O . n O 1 13 ILE 13 13 ? ? ? O . n O 1 14 LYS 14 14 ? ? ? O . n O 1 15 ASN 15 15 ? ? ? O . n O 1 16 ILE 16 16 ? ? ? O . n O 1 17 VAL 17 17 ? ? ? O . n O 1 18 NH2 18 18 ? ? ? O . n P 1 1 GLY 1 1 1 GLY GLY P . n P 1 2 VAL 2 2 2 VAL VAL P . n P 1 3 GLY 3 3 3 GLY GLY P . n P 1 4 ASP 4 4 4 ASP ASP P . n P 1 5 LEU 5 5 5 LEU LEU P . n P 1 6 ILE 6 6 6 ILE ILE P . n P 1 7 ARG 7 7 7 ARG ARG P . n P 1 8 LYS 8 8 8 LYS LYS P . n P 1 9 ALA 9 9 9 ALA ALA P . n P 1 10 VAL 10 10 10 VAL VAL P . n P 1 11 SER 11 11 11 SER SER P . n P 1 12 VAL 12 12 12 VAL VAL P . n P 1 13 ILE 13 13 13 ILE ILE P . n P 1 14 LYS 14 14 14 LYS LYS P . n P 1 15 ASN 15 15 15 ASN ASN P . n P 1 16 ILE 16 16 16 ILE ILE P . n P 1 17 VAL 17 17 17 VAL VAL P . n P 1 18 NH2 18 18 18 NH2 NH2 P . n Q 1 1 GLY 1 1 ? ? ? Q . n Q 1 2 VAL 2 2 ? ? ? Q . n Q 1 3 GLY 3 3 ? ? ? Q . n Q 1 4 ASP 4 4 4 ASP ASP Q . n Q 1 5 LEU 5 5 5 LEU LEU Q . n Q 1 6 ILE 6 6 6 ILE ILE Q . n Q 1 7 ARG 7 7 7 ARG ARG Q . n Q 1 8 LYS 8 8 8 LYS LYS Q . n Q 1 9 ALA 9 9 9 ALA ALA Q . n Q 1 10 VAL 10 10 10 VAL VAL Q . n Q 1 11 SER 11 11 11 SER SER Q . n Q 1 12 VAL 12 12 12 VAL VAL Q . n Q 1 13 ILE 13 13 13 ILE ILE Q . n Q 1 14 LYS 14 14 14 LYS LYS Q . n Q 1 15 ASN 15 15 15 ASN ASN Q . n Q 1 16 ILE 16 16 16 ILE ILE Q . n Q 1 17 VAL 17 17 17 VAL VAL Q . n Q 1 18 NH2 18 18 18 NH2 NH2 Q . n R 1 1 GLY 1 1 1 GLY GLY R . n R 1 2 VAL 2 2 2 VAL VAL R . n R 1 3 GLY 3 3 3 GLY GLY R . n R 1 4 ASP 4 4 4 ASP ASP R . n R 1 5 LEU 5 5 5 LEU LEU R . n R 1 6 ILE 6 6 6 ILE ILE R . n R 1 7 ARG 7 7 7 ARG ARG R . n R 1 8 LYS 8 8 ? ? ? R . n R 1 9 ALA 9 9 ? ? ? R . n R 1 10 VAL 10 10 ? ? ? R . n R 1 11 SER 11 11 ? ? ? R . n R 1 12 VAL 12 12 ? ? ? R . n R 1 13 ILE 13 13 ? ? ? R . n R 1 14 LYS 14 14 ? ? ? R . n R 1 15 ASN 15 15 ? ? ? R . n R 1 16 ILE 16 16 ? ? ? R . n R 1 17 VAL 17 17 ? ? ? R . n R 1 18 NH2 18 18 ? ? ? R . n S 1 1 GLY 1 1 1 GLY GLY S . n S 1 2 VAL 2 2 2 VAL VAL S . n S 1 3 GLY 3 3 3 GLY GLY S . n S 1 4 ASP 4 4 4 ASP ASP S . n S 1 5 LEU 5 5 5 LEU LEU S . n S 1 6 ILE 6 6 6 ILE ILE S . n S 1 7 ARG 7 7 7 ARG ARG S . n S 1 8 LYS 8 8 8 LYS LYS S . n S 1 9 ALA 9 9 9 ALA ALA S . n S 1 10 VAL 10 10 10 VAL VAL S . n S 1 11 SER 11 11 11 SER SER S . n S 1 12 VAL 12 12 12 VAL VAL S . n S 1 13 ILE 13 13 13 ILE ILE S . n S 1 14 LYS 14 14 14 LYS LYS S . n S 1 15 ASN 15 15 15 ASN ASN S . n S 1 16 ILE 16 16 16 ILE ILE S . n S 1 17 VAL 17 17 17 VAL VAL S . n S 1 18 NH2 18 18 18 NH2 NH2 S . n T 1 1 GLY 1 1 ? ? ? T . n T 1 2 VAL 2 2 ? ? ? T . n T 1 3 GLY 3 3 ? ? ? T . n T 1 4 ASP 4 4 4 ASP ASP T . n T 1 5 LEU 5 5 5 LEU LEU T . n T 1 6 ILE 6 6 6 ILE ILE T . n T 1 7 ARG 7 7 7 ARG ARG T . n T 1 8 LYS 8 8 8 LYS LYS T . n T 1 9 ALA 9 9 9 ALA ALA T . n T 1 10 VAL 10 10 10 VAL VAL T . n T 1 11 SER 11 11 11 SER SER T . n T 1 12 VAL 12 12 12 VAL VAL T . n T 1 13 ILE 13 13 13 ILE ILE T . n T 1 14 LYS 14 14 14 LYS LYS T . n T 1 15 ASN 15 15 15 ASN ASN T . n T 1 16 ILE 16 16 16 ILE ILE T . n T 1 17 VAL 17 17 17 VAL VAL T . n T 1 18 NH2 18 18 18 NH2 NH2 T . n U 1 1 GLY 1 1 1 GLY GLY U . n U 1 2 VAL 2 2 2 VAL VAL U . n U 1 3 GLY 3 3 3 GLY GLY U . n U 1 4 ASP 4 4 4 ASP ASP U . n U 1 5 LEU 5 5 5 LEU LEU U . n U 1 6 ILE 6 6 6 ILE ILE U . n U 1 7 ARG 7 7 7 ARG ARG U . n U 1 8 LYS 8 8 ? ? ? U . n U 1 9 ALA 9 9 ? ? ? U . n U 1 10 VAL 10 10 ? ? ? U . n U 1 11 SER 11 11 ? ? ? U . n U 1 12 VAL 12 12 ? ? ? U . n U 1 13 ILE 13 13 ? ? ? U . n U 1 14 LYS 14 14 ? ? ? U . n U 1 15 ASN 15 15 ? ? ? U . n U 1 16 ILE 16 16 ? ? ? U . n U 1 17 VAL 17 17 ? ? ? U . n U 1 18 NH2 18 18 ? ? ? U . n V 1 1 GLY 1 1 1 GLY GLY V . n V 1 2 VAL 2 2 2 VAL VAL V . n V 1 3 GLY 3 3 3 GLY GLY V . n V 1 4 ASP 4 4 4 ASP ASP V . n V 1 5 LEU 5 5 5 LEU LEU V . n V 1 6 ILE 6 6 6 ILE ILE V . n V 1 7 ARG 7 7 7 ARG ARG V . n V 1 8 LYS 8 8 8 LYS LYS V . n V 1 9 ALA 9 9 9 ALA ALA V . n V 1 10 VAL 10 10 10 VAL VAL V . n V 1 11 SER 11 11 11 SER SER V . n V 1 12 VAL 12 12 12 VAL VAL V . n V 1 13 ILE 13 13 13 ILE ILE V . n V 1 14 LYS 14 14 14 LYS LYS V . n V 1 15 ASN 15 15 15 ASN ASN V . n V 1 16 ILE 16 16 16 ILE ILE V . n V 1 17 VAL 17 17 17 VAL VAL V . n V 1 18 NH2 18 18 18 NH2 NH2 V . n W 1 1 GLY 1 1 ? ? ? W . n W 1 2 VAL 2 2 ? ? ? W . n W 1 3 GLY 3 3 ? ? ? W . n W 1 4 ASP 4 4 4 ASP ASP W . n W 1 5 LEU 5 5 5 LEU LEU W . n W 1 6 ILE 6 6 6 ILE ILE W . n W 1 7 ARG 7 7 7 ARG ARG W . n W 1 8 LYS 8 8 8 LYS LYS W . n W 1 9 ALA 9 9 9 ALA ALA W . n W 1 10 VAL 10 10 10 VAL VAL W . n W 1 11 SER 11 11 11 SER SER W . n W 1 12 VAL 12 12 12 VAL VAL W . n W 1 13 ILE 13 13 13 ILE ILE W . n W 1 14 LYS 14 14 14 LYS LYS W . n W 1 15 ASN 15 15 15 ASN ASN W . n W 1 16 ILE 16 16 16 ILE ILE W . n W 1 17 VAL 17 17 17 VAL VAL W . n W 1 18 NH2 18 18 18 NH2 NH2 W . n X 1 1 GLY 1 1 1 GLY GLY X . n X 1 2 VAL 2 2 2 VAL VAL X . n X 1 3 GLY 3 3 3 GLY GLY X . n X 1 4 ASP 4 4 4 ASP ASP X . n X 1 5 LEU 5 5 5 LEU LEU X . n X 1 6 ILE 6 6 6 ILE ILE X . n X 1 7 ARG 7 7 7 ARG ARG X . n X 1 8 LYS 8 8 ? ? ? X . n X 1 9 ALA 9 9 ? ? ? X . n X 1 10 VAL 10 10 ? ? ? X . n X 1 11 SER 11 11 ? ? ? X . n X 1 12 VAL 12 12 ? ? ? X . n X 1 13 ILE 13 13 ? ? ? X . n X 1 14 LYS 14 14 ? ? ? X . n X 1 15 ASN 15 15 ? ? ? X . n X 1 16 ILE 16 16 ? ? ? X . n X 1 17 VAL 17 17 ? ? ? X . n X 1 18 NH2 18 18 ? ? ? X . n Y 1 1 GLY 1 1 1 GLY GLY Y . n Y 1 2 VAL 2 2 2 VAL VAL Y . n Y 1 3 GLY 3 3 3 GLY GLY Y . n Y 1 4 ASP 4 4 4 ASP ASP Y . n Y 1 5 LEU 5 5 5 LEU LEU Y . n Y 1 6 ILE 6 6 6 ILE ILE Y . n Y 1 7 ARG 7 7 7 ARG ARG Y . n Y 1 8 LYS 8 8 8 LYS LYS Y . n Y 1 9 ALA 9 9 9 ALA ALA Y . n Y 1 10 VAL 10 10 10 VAL VAL Y . n Y 1 11 SER 11 11 11 SER SER Y . n Y 1 12 VAL 12 12 12 VAL VAL Y . n Y 1 13 ILE 13 13 13 ILE ILE Y . n Y 1 14 LYS 14 14 14 LYS LYS Y . n Y 1 15 ASN 15 15 15 ASN ASN Y . n Y 1 16 ILE 16 16 16 ILE ILE Y . n Y 1 17 VAL 17 17 17 VAL VAL Y . n Y 1 18 NH2 18 18 18 NH2 NH2 Y . n Z 1 1 GLY 1 1 ? ? ? Z . n Z 1 2 VAL 2 2 ? ? ? Z . n Z 1 3 GLY 3 3 ? ? ? Z . n Z 1 4 ASP 4 4 4 ASP ASP Z . n Z 1 5 LEU 5 5 5 LEU LEU Z . n Z 1 6 ILE 6 6 6 ILE ILE Z . n Z 1 7 ARG 7 7 7 ARG ARG Z . n Z 1 8 LYS 8 8 8 LYS LYS Z . n Z 1 9 ALA 9 9 9 ALA ALA Z . n Z 1 10 VAL 10 10 10 VAL VAL Z . n Z 1 11 SER 11 11 11 SER SER Z . n Z 1 12 VAL 12 12 12 VAL VAL Z . n Z 1 13 ILE 13 13 13 ILE ILE Z . n Z 1 14 LYS 14 14 14 LYS LYS Z . n Z 1 15 ASN 15 15 15 ASN ASN Z . n Z 1 16 ILE 16 16 16 ILE ILE Z . n Z 1 17 VAL 17 17 17 VAL VAL Z . n Z 1 18 NH2 18 18 18 NH2 NH2 Z . n AA 1 1 GLY 1 1 1 GLY GLY a . n AA 1 2 VAL 2 2 2 VAL VAL a . n AA 1 3 GLY 3 3 3 GLY GLY a . n AA 1 4 ASP 4 4 4 ASP ASP a . n AA 1 5 LEU 5 5 5 LEU LEU a . n AA 1 6 ILE 6 6 6 ILE ILE a . n AA 1 7 ARG 7 7 7 ARG ARG a . n AA 1 8 LYS 8 8 ? ? ? a . n AA 1 9 ALA 9 9 ? ? ? a . n AA 1 10 VAL 10 10 ? ? ? a . n AA 1 11 SER 11 11 ? ? ? a . n AA 1 12 VAL 12 12 ? ? ? a . n AA 1 13 ILE 13 13 ? ? ? a . n AA 1 14 LYS 14 14 ? ? ? a . n AA 1 15 ASN 15 15 ? ? ? a . n AA 1 16 ILE 16 16 ? ? ? a . n AA 1 17 VAL 17 17 ? ? ? a . n AA 1 18 NH2 18 18 ? ? ? a . n # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.1_4122: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7QV5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7QV5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7QV5 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.009 ? 2547 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.388 ? 3402 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 3.636 ? 351 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.056 ? 468 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 414 ? f_plane_restr ? ? # _struct.entry_id 7QV5 _struct.title 'Amyloid fibril from the antimicrobial peptide uperin 3.5' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7QV5 _struct_keywords.text 'antimicrobial peptide, amyloid, filament, cross-beta, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 1 ? X N N 1 ? Y N N 1 ? Z N N 1 ? AA N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UPE35_UPEMJ _struct_ref.pdbx_db_accession P82042 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GVGDLIRKAVSVIKNIV _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7QV5 A 1 ? 17 ? P82042 1 ? 17 ? 1 17 2 1 7QV5 B 1 ? 17 ? P82042 1 ? 17 ? 1 17 3 1 7QV5 C 1 ? 17 ? P82042 1 ? 17 ? 1 17 4 1 7QV5 D 1 ? 17 ? P82042 1 ? 17 ? 1 17 5 1 7QV5 E 1 ? 17 ? P82042 1 ? 17 ? 1 17 6 1 7QV5 F 1 ? 17 ? P82042 1 ? 17 ? 1 17 7 1 7QV5 G 1 ? 17 ? P82042 1 ? 17 ? 1 17 8 1 7QV5 H 1 ? 17 ? P82042 1 ? 17 ? 1 17 9 1 7QV5 I 1 ? 17 ? P82042 1 ? 17 ? 1 17 10 1 7QV5 J 1 ? 17 ? P82042 1 ? 17 ? 1 17 11 1 7QV5 K 1 ? 17 ? P82042 1 ? 17 ? 1 17 12 1 7QV5 L 1 ? 17 ? P82042 1 ? 17 ? 1 17 13 1 7QV5 M 1 ? 17 ? P82042 1 ? 17 ? 1 17 14 1 7QV5 N 1 ? 17 ? P82042 1 ? 17 ? 1 17 15 1 7QV5 O 1 ? 17 ? P82042 1 ? 17 ? 1 17 16 1 7QV5 P 1 ? 17 ? P82042 1 ? 17 ? 1 17 17 1 7QV5 Q 1 ? 17 ? P82042 1 ? 17 ? 1 17 18 1 7QV5 R 1 ? 17 ? P82042 1 ? 17 ? 1 17 19 1 7QV5 S 1 ? 17 ? P82042 1 ? 17 ? 1 17 20 1 7QV5 T 1 ? 17 ? P82042 1 ? 17 ? 1 17 21 1 7QV5 U 1 ? 17 ? P82042 1 ? 17 ? 1 17 22 1 7QV5 V 1 ? 17 ? P82042 1 ? 17 ? 1 17 23 1 7QV5 W 1 ? 17 ? P82042 1 ? 17 ? 1 17 24 1 7QV5 X 1 ? 17 ? P82042 1 ? 17 ? 1 17 25 1 7QV5 Y 1 ? 17 ? P82042 1 ? 17 ? 1 17 26 1 7QV5 Z 1 ? 17 ? P82042 1 ? 17 ? 1 17 27 1 7QV5 a 1 ? 17 ? P82042 1 ? 17 ? 1 17 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7QV5 NH2 A 18 ? UNP P82042 ? ? amidation 18 1 2 7QV5 NH2 B 18 ? UNP P82042 ? ? amidation 18 2 3 7QV5 NH2 C 18 ? UNP P82042 ? ? amidation 18 3 4 7QV5 NH2 D 18 ? UNP P82042 ? ? amidation 18 4 5 7QV5 NH2 E 18 ? UNP P82042 ? ? amidation 18 5 6 7QV5 NH2 F 18 ? UNP P82042 ? ? amidation 18 6 7 7QV5 NH2 G 18 ? UNP P82042 ? ? amidation 18 7 8 7QV5 NH2 H 18 ? UNP P82042 ? ? amidation 18 8 9 7QV5 NH2 I 18 ? UNP P82042 ? ? amidation 18 9 10 7QV5 NH2 J 18 ? UNP P82042 ? ? amidation 18 10 11 7QV5 NH2 K 18 ? UNP P82042 ? ? amidation 18 11 12 7QV5 NH2 L 18 ? UNP P82042 ? ? amidation 18 12 13 7QV5 NH2 M 18 ? UNP P82042 ? ? amidation 18 13 14 7QV5 NH2 N 18 ? UNP P82042 ? ? amidation 18 14 15 7QV5 NH2 O 18 ? UNP P82042 ? ? amidation 18 15 16 7QV5 NH2 P 18 ? UNP P82042 ? ? amidation 18 16 17 7QV5 NH2 Q 18 ? UNP P82042 ? ? amidation 18 17 18 7QV5 NH2 R 18 ? UNP P82042 ? ? amidation 18 18 19 7QV5 NH2 S 18 ? UNP P82042 ? ? amidation 18 19 20 7QV5 NH2 T 18 ? UNP P82042 ? ? amidation 18 20 21 7QV5 NH2 U 18 ? UNP P82042 ? ? amidation 18 21 22 7QV5 NH2 V 18 ? UNP P82042 ? ? amidation 18 22 23 7QV5 NH2 W 18 ? UNP P82042 ? ? amidation 18 23 24 7QV5 NH2 X 18 ? UNP P82042 ? ? amidation 18 24 25 7QV5 NH2 Y 18 ? UNP P82042 ? ? amidation 18 25 26 7QV5 NH2 Z 18 ? UNP P82042 ? ? amidation 18 26 27 7QV5 NH2 a 18 ? UNP P82042 ? ? amidation 18 27 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 27-meric _pdbx_struct_assembly.oligomeric_count 27 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 17 C ? ? ? 1_555 A NH2 18 N ? ? A VAL 17 A NH2 18 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? B VAL 17 C ? ? ? 1_555 B NH2 18 N ? ? B VAL 17 B NH2 18 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale3 covale both ? D VAL 17 C ? ? ? 1_555 D NH2 18 N ? ? D VAL 17 D NH2 18 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? E VAL 17 C ? ? ? 1_555 E NH2 18 N ? ? E VAL 17 E NH2 18 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? G VAL 17 C ? ? ? 1_555 G NH2 18 N ? ? G VAL 17 G NH2 18 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? H VAL 17 C ? ? ? 1_555 H NH2 18 N ? ? H VAL 17 H NH2 18 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale7 covale both ? J VAL 17 C ? ? ? 1_555 J NH2 18 N ? ? J VAL 17 J NH2 18 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? K VAL 17 C ? ? ? 1_555 K NH2 18 N ? ? K VAL 17 K NH2 18 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale9 covale both ? M VAL 17 C ? ? ? 1_555 M NH2 18 N ? ? M VAL 17 M NH2 18 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale10 covale both ? N VAL 17 C ? ? ? 1_555 N NH2 18 N ? ? N VAL 17 N NH2 18 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? P VAL 17 C ? ? ? 1_555 P NH2 18 N ? ? P VAL 17 P NH2 18 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? Q VAL 17 C ? ? ? 1_555 Q NH2 18 N ? ? Q VAL 17 Q NH2 18 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale13 covale both ? S VAL 17 C ? ? ? 1_555 S NH2 18 N ? ? S VAL 17 S NH2 18 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale14 covale both ? T VAL 17 C ? ? ? 1_555 T NH2 18 N ? ? T VAL 17 T NH2 18 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale15 covale both ? V VAL 17 C ? ? ? 1_555 V NH2 18 N ? ? V VAL 17 V NH2 18 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale16 covale both ? W VAL 17 C ? ? ? 1_555 W NH2 18 N ? ? W VAL 17 W NH2 18 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale17 covale both ? Y VAL 17 C ? ? ? 1_555 Y NH2 18 N ? ? Y VAL 17 Y NH2 18 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale18 covale both ? Z VAL 17 C ? ? ? 1_555 Z NH2 18 N ? ? Z VAL 17 Z NH2 18 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 18 ? VAL A 17 ? NH2 A 18 ? 1_555 VAL A 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 2 NH2 B 18 ? VAL B 17 ? NH2 B 18 ? 1_555 VAL B 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 3 NH2 D 18 ? VAL D 17 ? NH2 D 18 ? 1_555 VAL D 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 4 NH2 E 18 ? VAL E 17 ? NH2 E 18 ? 1_555 VAL E 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 5 NH2 G 18 ? VAL G 17 ? NH2 G 18 ? 1_555 VAL G 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 6 NH2 H 18 ? VAL H 17 ? NH2 H 18 ? 1_555 VAL H 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 7 NH2 J 18 ? VAL J 17 ? NH2 J 18 ? 1_555 VAL J 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 8 NH2 K 18 ? VAL K 17 ? NH2 K 18 ? 1_555 VAL K 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 9 NH2 M 18 ? VAL M 17 ? NH2 M 18 ? 1_555 VAL M 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 10 NH2 N 18 ? VAL N 17 ? NH2 N 18 ? 1_555 VAL N 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 11 NH2 P 18 ? VAL P 17 ? NH2 P 18 ? 1_555 VAL P 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 12 NH2 Q 18 ? VAL Q 17 ? NH2 Q 18 ? 1_555 VAL Q 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 13 NH2 S 18 ? VAL S 17 ? NH2 S 18 ? 1_555 VAL S 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 14 NH2 T 18 ? VAL T 17 ? NH2 T 18 ? 1_555 VAL T 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 15 NH2 V 18 ? VAL V 17 ? NH2 V 18 ? 1_555 VAL V 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 16 NH2 W 18 ? VAL W 17 ? NH2 W 18 ? 1_555 VAL W 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 17 NH2 Y 18 ? VAL Y 17 ? NH2 Y 18 ? 1_555 VAL Y 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' 18 NH2 Z 18 ? VAL Z 17 ? NH2 Z 18 ? 1_555 VAL Z 17 ? 1_555 . . VAL 2 NH2 None 'Terminal amidation' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 5 ? ILE A 16 ? LEU A 5 ILE A 16 AA1 2 LEU J 5 ? ILE J 16 ? LEU J 5 ILE J 16 AA1 3 LEU S 5 ? ILE S 16 ? LEU S 5 ILE S 16 AA2 1 ILE B 6 ? ILE B 16 ? ILE B 6 ILE B 16 AA2 2 ILE K 6 ? ILE K 16 ? ILE K 6 ILE K 16 AA2 3 ILE T 6 ? ILE T 16 ? ILE T 6 ILE T 16 AA3 1 VAL C 2 ? ILE C 6 ? VAL C 2 ILE C 6 AA3 2 VAL L 2 ? ILE L 6 ? VAL L 2 ILE L 6 AA3 3 VAL U 2 ? ILE U 6 ? VAL U 2 ILE U 6 AA4 1 LEU D 5 ? ILE D 16 ? LEU D 5 ILE D 16 AA4 2 LEU M 5 ? ILE M 16 ? LEU M 5 ILE M 16 AA4 3 LEU V 5 ? ILE V 16 ? LEU V 5 ILE V 16 AA5 1 ILE E 6 ? ILE E 16 ? ILE E 6 ILE E 16 AA5 2 ILE N 6 ? ILE N 16 ? ILE N 6 ILE N 16 AA5 3 ILE W 6 ? ILE W 16 ? ILE W 6 ILE W 16 AA6 1 VAL F 2 ? ILE F 6 ? VAL F 2 ILE F 6 AA6 2 VAL O 2 ? ILE O 6 ? VAL O 2 ILE O 6 AA6 3 VAL X 2 ? ILE X 6 ? VAL X 2 ILE X 6 AA7 1 LEU G 5 ? ILE G 16 ? LEU G 5 ILE G 16 AA7 2 LEU P 5 ? ILE P 16 ? LEU P 5 ILE P 16 AA7 3 LEU Y 5 ? ILE Y 16 ? LEU Y 5 ILE Y 16 AA8 1 ILE H 6 ? ILE H 16 ? ILE H 6 ILE H 16 AA8 2 ILE Q 6 ? ILE Q 16 ? ILE Q 6 ILE Q 16 AA8 3 ILE Z 6 ? ILE Z 16 ? ILE Z 6 ILE Z 16 AA9 1 VAL I 2 ? ILE I 6 ? VAL I 2 ILE I 6 AA9 2 VAL R 2 ? ILE R 6 ? VAL R 2 ILE R 6 AA9 3 VAL AA 2 ? ILE AA 6 ? VAL a 2 ILE a 6 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 15 ? N ASN A 15 O ILE J 16 ? O ILE J 16 AA1 2 3 N ASN J 15 ? N ASN J 15 O ILE S 16 ? O ILE S 16 AA2 1 2 N ASN B 15 ? N ASN B 15 O ILE K 16 ? O ILE K 16 AA2 2 3 N ASN K 15 ? N ASN K 15 O ILE T 16 ? O ILE T 16 AA3 1 2 N ASP C 4 ? N ASP C 4 O GLY L 3 ? O GLY L 3 AA3 2 3 N ASP L 4 ? N ASP L 4 O GLY U 3 ? O GLY U 3 AA4 1 2 N ASN D 15 ? N ASN D 15 O ILE M 16 ? O ILE M 16 AA4 2 3 N ASN M 15 ? N ASN M 15 O ILE V 16 ? O ILE V 16 AA5 1 2 N ASN E 15 ? N ASN E 15 O ILE N 16 ? O ILE N 16 AA5 2 3 N ASN N 15 ? N ASN N 15 O ILE W 16 ? O ILE W 16 AA6 1 2 N ASP F 4 ? N ASP F 4 O GLY O 3 ? O GLY O 3 AA6 2 3 N ASP O 4 ? N ASP O 4 O GLY X 3 ? O GLY X 3 AA7 1 2 N ASN G 15 ? N ASN G 15 O ILE P 16 ? O ILE P 16 AA7 2 3 N ASN P 15 ? N ASN P 15 O ILE Y 16 ? O ILE Y 16 AA8 1 2 N ASN H 15 ? N ASN H 15 O ILE Q 16 ? O ILE Q 16 AA8 2 3 N ASN Q 15 ? N ASN Q 15 O ILE Z 16 ? O ILE Z 16 AA9 1 2 N ASP I 4 ? N ASP I 4 O GLY R 3 ? O GLY R 3 AA9 2 3 N ASP R 4 ? N ASP R 4 O GLY AA 3 ? O GLY a 3 # _pdbx_entry_details.entry_id 7QV5 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _em_3d_fitting.entry_id 7QV5 _em_3d_fitting.id 1 _em_3d_fitting.details ;- Initial model building of a single helical layer using ChimeraX and Coot - Expansion to three layers, refinement in ISOLDE - Truncation of outer layers, re-expansion to three layers, refinement using phenix.real_space_refine ; _em_3d_fitting.overall_b_value 59.34 _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria CC _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7QV5 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 215020 _em_3d_reconstruction.resolution 3.0 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'uperin 3.5' _em_entity_assembly.source SYNTHETIC _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7QV5 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter 50 _em_imaging.calibrated_defocus_max 3100 _em_imaging.calibrated_defocus_min 350 _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 2500 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_magnification 105000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.details 'wait time 15s after application, blot time 4s' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7QV5 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7QV5 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY 1 ? B GLY 1 2 1 Y 1 B VAL 2 ? B VAL 2 3 1 Y 1 B GLY 3 ? B GLY 3 4 1 Y 1 C LYS 8 ? C LYS 8 5 1 Y 1 C ALA 9 ? C ALA 9 6 1 Y 1 C VAL 10 ? C VAL 10 7 1 Y 1 C SER 11 ? C SER 11 8 1 Y 1 C VAL 12 ? C VAL 12 9 1 Y 1 C ILE 13 ? C ILE 13 10 1 Y 1 C LYS 14 ? C LYS 14 11 1 Y 1 C ASN 15 ? C ASN 15 12 1 Y 1 C ILE 16 ? C ILE 16 13 1 Y 1 C VAL 17 ? C VAL 17 14 1 Y 1 C NH2 18 ? C NH2 18 15 1 Y 1 E GLY 1 ? E GLY 1 16 1 Y 1 E VAL 2 ? E VAL 2 17 1 Y 1 E GLY 3 ? E GLY 3 18 1 Y 1 F LYS 8 ? F LYS 8 19 1 Y 1 F ALA 9 ? F ALA 9 20 1 Y 1 F VAL 10 ? F VAL 10 21 1 Y 1 F SER 11 ? F SER 11 22 1 Y 1 F VAL 12 ? F VAL 12 23 1 Y 1 F ILE 13 ? F ILE 13 24 1 Y 1 F LYS 14 ? F LYS 14 25 1 Y 1 F ASN 15 ? F ASN 15 26 1 Y 1 F ILE 16 ? F ILE 16 27 1 Y 1 F VAL 17 ? F VAL 17 28 1 Y 1 F NH2 18 ? F NH2 18 29 1 Y 1 H GLY 1 ? H GLY 1 30 1 Y 1 H VAL 2 ? H VAL 2 31 1 Y 1 H GLY 3 ? H GLY 3 32 1 Y 1 I LYS 8 ? I LYS 8 33 1 Y 1 I ALA 9 ? I ALA 9 34 1 Y 1 I VAL 10 ? I VAL 10 35 1 Y 1 I SER 11 ? I SER 11 36 1 Y 1 I VAL 12 ? I VAL 12 37 1 Y 1 I ILE 13 ? I ILE 13 38 1 Y 1 I LYS 14 ? I LYS 14 39 1 Y 1 I ASN 15 ? I ASN 15 40 1 Y 1 I ILE 16 ? I ILE 16 41 1 Y 1 I VAL 17 ? I VAL 17 42 1 Y 1 I NH2 18 ? I NH2 18 43 1 Y 1 K GLY 1 ? K GLY 1 44 1 Y 1 K VAL 2 ? K VAL 2 45 1 Y 1 K GLY 3 ? K GLY 3 46 1 Y 1 L LYS 8 ? L LYS 8 47 1 Y 1 L ALA 9 ? L ALA 9 48 1 Y 1 L VAL 10 ? L VAL 10 49 1 Y 1 L SER 11 ? L SER 11 50 1 Y 1 L VAL 12 ? L VAL 12 51 1 Y 1 L ILE 13 ? L ILE 13 52 1 Y 1 L LYS 14 ? L LYS 14 53 1 Y 1 L ASN 15 ? L ASN 15 54 1 Y 1 L ILE 16 ? L ILE 16 55 1 Y 1 L VAL 17 ? L VAL 17 56 1 Y 1 L NH2 18 ? L NH2 18 57 1 Y 1 N GLY 1 ? N GLY 1 58 1 Y 1 N VAL 2 ? N VAL 2 59 1 Y 1 N GLY 3 ? N GLY 3 60 1 Y 1 O LYS 8 ? O LYS 8 61 1 Y 1 O ALA 9 ? O ALA 9 62 1 Y 1 O VAL 10 ? O VAL 10 63 1 Y 1 O SER 11 ? O SER 11 64 1 Y 1 O VAL 12 ? O VAL 12 65 1 Y 1 O ILE 13 ? O ILE 13 66 1 Y 1 O LYS 14 ? O LYS 14 67 1 Y 1 O ASN 15 ? O ASN 15 68 1 Y 1 O ILE 16 ? O ILE 16 69 1 Y 1 O VAL 17 ? O VAL 17 70 1 Y 1 O NH2 18 ? O NH2 18 71 1 Y 1 Q GLY 1 ? Q GLY 1 72 1 Y 1 Q VAL 2 ? Q VAL 2 73 1 Y 1 Q GLY 3 ? Q GLY 3 74 1 Y 1 R LYS 8 ? R LYS 8 75 1 Y 1 R ALA 9 ? R ALA 9 76 1 Y 1 R VAL 10 ? R VAL 10 77 1 Y 1 R SER 11 ? R SER 11 78 1 Y 1 R VAL 12 ? R VAL 12 79 1 Y 1 R ILE 13 ? R ILE 13 80 1 Y 1 R LYS 14 ? R LYS 14 81 1 Y 1 R ASN 15 ? R ASN 15 82 1 Y 1 R ILE 16 ? R ILE 16 83 1 Y 1 R VAL 17 ? R VAL 17 84 1 Y 1 R NH2 18 ? R NH2 18 85 1 Y 1 T GLY 1 ? T GLY 1 86 1 Y 1 T VAL 2 ? T VAL 2 87 1 Y 1 T GLY 3 ? T GLY 3 88 1 Y 1 U LYS 8 ? U LYS 8 89 1 Y 1 U ALA 9 ? U ALA 9 90 1 Y 1 U VAL 10 ? U VAL 10 91 1 Y 1 U SER 11 ? U SER 11 92 1 Y 1 U VAL 12 ? U VAL 12 93 1 Y 1 U ILE 13 ? U ILE 13 94 1 Y 1 U LYS 14 ? U LYS 14 95 1 Y 1 U ASN 15 ? U ASN 15 96 1 Y 1 U ILE 16 ? U ILE 16 97 1 Y 1 U VAL 17 ? U VAL 17 98 1 Y 1 U NH2 18 ? U NH2 18 99 1 Y 1 W GLY 1 ? W GLY 1 100 1 Y 1 W VAL 2 ? W VAL 2 101 1 Y 1 W GLY 3 ? W GLY 3 102 1 Y 1 X LYS 8 ? X LYS 8 103 1 Y 1 X ALA 9 ? X ALA 9 104 1 Y 1 X VAL 10 ? X VAL 10 105 1 Y 1 X SER 11 ? X SER 11 106 1 Y 1 X VAL 12 ? X VAL 12 107 1 Y 1 X ILE 13 ? X ILE 13 108 1 Y 1 X LYS 14 ? X LYS 14 109 1 Y 1 X ASN 15 ? X ASN 15 110 1 Y 1 X ILE 16 ? X ILE 16 111 1 Y 1 X VAL 17 ? X VAL 17 112 1 Y 1 X NH2 18 ? X NH2 18 113 1 Y 1 Z GLY 1 ? Z GLY 1 114 1 Y 1 Z VAL 2 ? Z VAL 2 115 1 Y 1 Z GLY 3 ? Z GLY 3 116 1 Y 1 a LYS 8 ? AA LYS 8 117 1 Y 1 a ALA 9 ? AA ALA 9 118 1 Y 1 a VAL 10 ? AA VAL 10 119 1 Y 1 a SER 11 ? AA SER 11 120 1 Y 1 a VAL 12 ? AA VAL 12 121 1 Y 1 a ILE 13 ? AA ILE 13 122 1 Y 1 a LYS 14 ? AA LYS 14 123 1 Y 1 a ASN 15 ? AA ASN 15 124 1 Y 1 a ILE 16 ? AA ILE 16 125 1 Y 1 a VAL 17 ? AA VAL 17 126 1 Y 1 a NH2 18 ? AA NH2 18 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLY N N N N 74 GLY CA C N N 75 GLY C C N N 76 GLY O O N N 77 GLY OXT O N N 78 GLY H H N N 79 GLY H2 H N N 80 GLY HA2 H N N 81 GLY HA3 H N N 82 GLY HXT H N N 83 ILE N N N N 84 ILE CA C N S 85 ILE C C N N 86 ILE O O N N 87 ILE CB C N S 88 ILE CG1 C N N 89 ILE CG2 C N N 90 ILE CD1 C N N 91 ILE OXT O N N 92 ILE H H N N 93 ILE H2 H N N 94 ILE HA H N N 95 ILE HB H N N 96 ILE HG12 H N N 97 ILE HG13 H N N 98 ILE HG21 H N N 99 ILE HG22 H N N 100 ILE HG23 H N N 101 ILE HD11 H N N 102 ILE HD12 H N N 103 ILE HD13 H N N 104 ILE HXT H N N 105 LEU N N N N 106 LEU CA C N S 107 LEU C C N N 108 LEU O O N N 109 LEU CB C N N 110 LEU CG C N N 111 LEU CD1 C N N 112 LEU CD2 C N N 113 LEU OXT O N N 114 LEU H H N N 115 LEU H2 H N N 116 LEU HA H N N 117 LEU HB2 H N N 118 LEU HB3 H N N 119 LEU HG H N N 120 LEU HD11 H N N 121 LEU HD12 H N N 122 LEU HD13 H N N 123 LEU HD21 H N N 124 LEU HD22 H N N 125 LEU HD23 H N N 126 LEU HXT H N N 127 LYS N N N N 128 LYS CA C N S 129 LYS C C N N 130 LYS O O N N 131 LYS CB C N N 132 LYS CG C N N 133 LYS CD C N N 134 LYS CE C N N 135 LYS NZ N N N 136 LYS OXT O N N 137 LYS H H N N 138 LYS H2 H N N 139 LYS HA H N N 140 LYS HB2 H N N 141 LYS HB3 H N N 142 LYS HG2 H N N 143 LYS HG3 H N N 144 LYS HD2 H N N 145 LYS HD3 H N N 146 LYS HE2 H N N 147 LYS HE3 H N N 148 LYS HZ1 H N N 149 LYS HZ2 H N N 150 LYS HZ3 H N N 151 LYS HXT H N N 152 NH2 N N N N 153 NH2 HN1 H N N 154 NH2 HN2 H N N 155 SER N N N N 156 SER CA C N S 157 SER C C N N 158 SER O O N N 159 SER CB C N N 160 SER OG O N N 161 SER OXT O N N 162 SER H H N N 163 SER H2 H N N 164 SER HA H N N 165 SER HB2 H N N 166 SER HB3 H N N 167 SER HG H N N 168 SER HXT H N N 169 VAL N N N N 170 VAL CA C N S 171 VAL C C N N 172 VAL O O N N 173 VAL CB C N N 174 VAL CG1 C N N 175 VAL CG2 C N N 176 VAL OXT O N N 177 VAL H H N N 178 VAL H2 H N N 179 VAL HA H N N 180 VAL HB H N N 181 VAL HG11 H N N 182 VAL HG12 H N N 183 VAL HG13 H N N 184 VAL HG21 H N N 185 VAL HG22 H N N 186 VAL HG23 H N N 187 VAL HXT H N N 188 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLY N CA sing N N 70 GLY N H sing N N 71 GLY N H2 sing N N 72 GLY CA C sing N N 73 GLY CA HA2 sing N N 74 GLY CA HA3 sing N N 75 GLY C O doub N N 76 GLY C OXT sing N N 77 GLY OXT HXT sing N N 78 ILE N CA sing N N 79 ILE N H sing N N 80 ILE N H2 sing N N 81 ILE CA C sing N N 82 ILE CA CB sing N N 83 ILE CA HA sing N N 84 ILE C O doub N N 85 ILE C OXT sing N N 86 ILE CB CG1 sing N N 87 ILE CB CG2 sing N N 88 ILE CB HB sing N N 89 ILE CG1 CD1 sing N N 90 ILE CG1 HG12 sing N N 91 ILE CG1 HG13 sing N N 92 ILE CG2 HG21 sing N N 93 ILE CG2 HG22 sing N N 94 ILE CG2 HG23 sing N N 95 ILE CD1 HD11 sing N N 96 ILE CD1 HD12 sing N N 97 ILE CD1 HD13 sing N N 98 ILE OXT HXT sing N N 99 LEU N CA sing N N 100 LEU N H sing N N 101 LEU N H2 sing N N 102 LEU CA C sing N N 103 LEU CA CB sing N N 104 LEU CA HA sing N N 105 LEU C O doub N N 106 LEU C OXT sing N N 107 LEU CB CG sing N N 108 LEU CB HB2 sing N N 109 LEU CB HB3 sing N N 110 LEU CG CD1 sing N N 111 LEU CG CD2 sing N N 112 LEU CG HG sing N N 113 LEU CD1 HD11 sing N N 114 LEU CD1 HD12 sing N N 115 LEU CD1 HD13 sing N N 116 LEU CD2 HD21 sing N N 117 LEU CD2 HD22 sing N N 118 LEU CD2 HD23 sing N N 119 LEU OXT HXT sing N N 120 LYS N CA sing N N 121 LYS N H sing N N 122 LYS N H2 sing N N 123 LYS CA C sing N N 124 LYS CA CB sing N N 125 LYS CA HA sing N N 126 LYS C O doub N N 127 LYS C OXT sing N N 128 LYS CB CG sing N N 129 LYS CB HB2 sing N N 130 LYS CB HB3 sing N N 131 LYS CG CD sing N N 132 LYS CG HG2 sing N N 133 LYS CG HG3 sing N N 134 LYS CD CE sing N N 135 LYS CD HD2 sing N N 136 LYS CD HD3 sing N N 137 LYS CE NZ sing N N 138 LYS CE HE2 sing N N 139 LYS CE HE3 sing N N 140 LYS NZ HZ1 sing N N 141 LYS NZ HZ2 sing N N 142 LYS NZ HZ3 sing N N 143 LYS OXT HXT sing N N 144 NH2 N HN1 sing N N 145 NH2 N HN2 sing N N 146 SER N CA sing N N 147 SER N H sing N N 148 SER N H2 sing N N 149 SER CA C sing N N 150 SER CA CB sing N N 151 SER CA HA sing N N 152 SER C O doub N N 153 SER C OXT sing N N 154 SER CB OG sing N N 155 SER CB HB2 sing N N 156 SER CB HB3 sing N N 157 SER OG HG sing N N 158 SER OXT HXT sing N N 159 VAL N CA sing N N 160 VAL N H sing N N 161 VAL N H2 sing N N 162 VAL CA C sing N N 163 VAL CA CB sing N N 164 VAL CA HA sing N N 165 VAL C O doub N N 166 VAL C OXT sing N N 167 VAL CB CG1 sing N N 168 VAL CB CG2 sing N N 169 VAL CB HB sing N N 170 VAL CG1 HG11 sing N N 171 VAL CG1 HG12 sing N N 172 VAL CG1 HG13 sing N N 173 VAL CG2 HG21 sing N N 174 VAL CG2 HG22 sing N N 175 VAL CG2 HG23 sing N N 176 VAL OXT HXT sing N N 177 # _em_admin.entry_id 7QV5 _em_admin.current_status REL _em_admin.deposition_date 2022-01-19 _em_admin.deposition_site PDBE _em_admin.last_update 2024-11-06 _em_admin.map_release_date 2022-06-29 _em_admin.title 'Amyloid fibril from the antimicrobial peptide uperin 3.5' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details 'CTF refined after 3D reconstruction' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 33.0 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 104954 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Uperoleia mjobergii' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -1.14 _em_helical_entity.axial_rise_per_subunit 4.86 _em_helical_entity.axial_symmetry C3 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.average_exposure_time 3 _em_image_recording.details 'Collected in movie-mode; 45 frames per exposure.' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 11857 _em_image_recording.avg_electron_dose_per_subtomogram ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details '4 unique helical units per segment' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 2447463 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? crYOLO 1.8-beta 1 ? ? 2 'IMAGE ACQUISITION' ? EPU 2.8.0.1256 ? ? 1 3 'IMAGE ACQUISITION' ? DigitalMicrograph 3.32.2403 ? ? 1 4 MASKING ? ? ? ? ? ? 5 'CTF CORRECTION' 'Internal CTFFIND4' RELION 3.1.3 1 ? ? 6 'LAYERLINE INDEXING' ? ? ? ? ? ? 7 'DIFFRACTION INDEXING' ? ? ? ? ? ? 8 'MODEL FITTING' ? 'UCSF ChimeraX' 1.3 ? 1 ? 9 'MODEL FITTING' ? Coot 0.9.3 ? 1 ? 10 OTHER ? ? ? ? ? ? 11 'INITIAL EULER ASSIGNMENT' 'Helical SGD initial model' cryoSPARC 2.3 1 ? ? 12 'INITIAL EULER ASSIGNMENT' '2D classes for helical parameter estimation' RELION 3.1.3 1 ? ? 13 'FINAL EULER ASSIGNMENT' ? RELION 3.1.3 1 ? ? 14 CLASSIFICATION ? RELION 3.1.3 1 ? ? 15 RECONSTRUCTION ? RELION 3.1.3 1 ? ? 16 'MODEL REFINEMENT' ? PHENIX 1.19.1 ? 1 ? 17 'MODEL REFINEMENT' ? ISOLDE 1.0 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 5 _em_specimen.details 'Concentration refers to peptide monomer before fibrillation' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Other government' ? LOM2018 1 'Israel Science Foundation' ? 2111/20 2 'Israel Ministry of Science and Technology' ? 3-15517 3 'United States - Israel Binational Science Foundation (BSF)' ? 2017280 4 'Joachim Herz Stiftung' ? 'Add-on Fellowship' 5 # _atom_sites.entry_id 7QV5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_