HEADER TRANSFERASE 24-JAN-22 7QW5 TITLE ADENINE-SPECIFIC DNA METHYLTRANSFERASE M.BSECI COMPLEXED WITH ADOHCY TITLE 2 AND COGNATE UNMETHYLATED DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MODIFICATION METHYLASE BSECI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M.BSECI,ADENINE-SPECIFIC METHYLTRANSFERASE BSECI; COMPND 5 EC: 2.1.1.72; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UNMETHYLATED DNA DUPLEX; COMPND 9 CHAIN: Z; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: UNMETHYLATED DNA DUPLEX; COMPND 13 CHAIN: Y; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: BSECIM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 10 ORGANISM_TAXID: 1422; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 14 ORGANISM_TAXID: 1422 KEYWDS METHYLTRANSFERASE, DNA-MODIFICATION, ADENINE-N6 METHYLATION, BASE KEYWDS 2 FLIPPING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.MITSIKAS,K.KOUYIANOU,D.KOTSIFAKI,M.PROVIDAKI,V.BOURIOTIS, AUTHOR 2 N.M.GLYKOS,M.KOKKINIDIS REVDAT 2 19-JUN-24 7QW5 1 REMARK REVDAT 1 25-JAN-23 7QW5 0 JRNL AUTH D.A.MITSIKAS,K.KOUYIANOU,D.KOTSIFAKI,M.PROVIDAKI, JRNL AUTH 2 V.BOURIOTIS,N.M.GLYKOS,M.KOKKINIDIS JRNL TITL STRUCTURE OF M.BSECI DNA METHYLTRANSFERASE FROM GEOBACILLUS JRNL TITL 2 STEAROTHERMOPHILUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 31905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4900 - 4.9500 0.98 2805 166 0.1514 0.1805 REMARK 3 2 4.9500 - 3.9300 0.99 2780 155 0.1428 0.1559 REMARK 3 3 3.9300 - 3.4300 0.99 2777 152 0.1826 0.2113 REMARK 3 4 3.4300 - 3.1200 0.99 2811 135 0.2374 0.2954 REMARK 3 5 3.1200 - 2.9000 0.99 2769 143 0.2643 0.3160 REMARK 3 6 2.9000 - 2.7300 0.99 2819 138 0.2748 0.3450 REMARK 3 7 2.7300 - 2.5900 0.99 2769 157 0.2890 0.3125 REMARK 3 8 2.5900 - 2.4800 0.99 2767 153 0.2801 0.2796 REMARK 3 9 2.4800 - 2.3800 0.99 2792 140 0.2934 0.2987 REMARK 3 10 2.3800 - 2.3000 0.99 2795 127 0.3009 0.3412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 56.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.315 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.499 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4947 REMARK 3 ANGLE : 0.731 6767 REMARK 3 CHIRALITY : 0.058 745 REMARK 3 PLANARITY : 0.003 797 REMARK 3 DIHEDRAL : 15.369 1882 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.3802 79.2329 3.7586 REMARK 3 T TENSOR REMARK 3 T11: 0.8426 T22: 0.3791 REMARK 3 T33: 0.5616 T12: -0.0795 REMARK 3 T13: -0.0218 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.1520 L22: 2.2438 REMARK 3 L33: 2.2459 L12: 1.0143 REMARK 3 L13: -0.2713 L23: 0.2208 REMARK 3 S TENSOR REMARK 3 S11: -0.1261 S12: -0.0194 S13: 0.2209 REMARK 3 S21: -0.2502 S22: 0.2029 S23: -0.3641 REMARK 3 S31: -0.7986 S32: 0.2087 S33: 0.0681 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.2504 64.4736 1.3386 REMARK 3 T TENSOR REMARK 3 T11: 0.5387 T22: 0.3461 REMARK 3 T33: 0.4287 T12: -0.0418 REMARK 3 T13: -0.0686 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.9163 L22: 1.8214 REMARK 3 L33: 1.3077 L12: 1.0395 REMARK 3 L13: -0.0102 L23: 0.4615 REMARK 3 S TENSOR REMARK 3 S11: -0.1581 S12: 0.0042 S13: 0.0816 REMARK 3 S21: -0.3839 S22: 0.1767 S23: 0.0058 REMARK 3 S31: -0.3443 S32: -0.0624 S33: 0.0197 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.3354 55.9384 10.7970 REMARK 3 T TENSOR REMARK 3 T11: 0.5850 T22: 0.6227 REMARK 3 T33: 0.7694 T12: -0.0146 REMARK 3 T13: -0.0793 T23: -0.0863 REMARK 3 L TENSOR REMARK 3 L11: 0.5566 L22: 2.1399 REMARK 3 L33: 1.0642 L12: 0.0786 REMARK 3 L13: 0.4388 L23: 0.0728 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: 0.0510 S13: -0.2890 REMARK 3 S21: -0.0321 S22: 0.0025 S23: -0.6716 REMARK 3 S31: 0.1814 S32: 0.5968 S33: -0.0225 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 372 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.9299 46.0068 13.8420 REMARK 3 T TENSOR REMARK 3 T11: 0.6483 T22: 0.5039 REMARK 3 T33: 0.5528 T12: -0.0556 REMARK 3 T13: -0.0155 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.7503 L22: 1.3573 REMARK 3 L33: 1.2913 L12: 0.7946 REMARK 3 L13: 0.3547 L23: -0.0664 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.1993 S13: -0.0430 REMARK 3 S21: 0.2295 S22: 0.0289 S23: -0.1339 REMARK 3 S31: 0.3793 S32: -0.0254 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 373 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1871 41.6024 21.0858 REMARK 3 T TENSOR REMARK 3 T11: 0.6727 T22: 0.7295 REMARK 3 T33: 0.4992 T12: -0.2711 REMARK 3 T13: 0.1409 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 0.6763 L22: 1.3444 REMARK 3 L33: 0.9006 L12: 0.7535 REMARK 3 L13: -0.3662 L23: 0.1932 REMARK 3 S TENSOR REMARK 3 S11: 0.1846 S12: -0.0510 S13: -0.2706 REMARK 3 S21: 0.7093 S22: -0.3466 S23: 0.2014 REMARK 3 S31: 0.4656 S32: -0.2505 S33: -0.0107 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 403 THROUGH 486 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3855 45.7204 18.2456 REMARK 3 T TENSOR REMARK 3 T11: 0.5937 T22: 0.6967 REMARK 3 T33: 0.4983 T12: -0.1847 REMARK 3 T13: 0.0926 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.0125 L22: 2.0441 REMARK 3 L33: 1.5507 L12: -0.0423 REMARK 3 L13: -0.5506 L23: 0.3325 REMARK 3 S TENSOR REMARK 3 S11: 0.1858 S12: -0.2883 S13: -0.0166 REMARK 3 S21: 0.2825 S22: -0.2483 S23: 0.4565 REMARK 3 S31: 0.3034 S32: -0.6556 S33: 0.0021 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 487 THROUGH 576 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.6757 33.5016 14.4721 REMARK 3 T TENSOR REMARK 3 T11: 0.8525 T22: 0.4175 REMARK 3 T33: 0.6829 T12: -0.0168 REMARK 3 T13: -0.0974 T23: 0.0972 REMARK 3 L TENSOR REMARK 3 L11: 1.2843 L22: 0.5498 REMARK 3 L33: 0.9548 L12: 0.0678 REMARK 3 L13: -0.3194 L23: 0.3307 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: -0.1660 S13: -0.5805 REMARK 3 S21: 0.2998 S22: -0.0367 S23: -0.2625 REMARK 3 S31: 0.6746 S32: 0.1484 S33: 0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'Z' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6593 57.1388 13.9205 REMARK 3 T TENSOR REMARK 3 T11: 0.5515 T22: 0.5940 REMARK 3 T33: 0.3613 T12: -0.1022 REMARK 3 T13: -0.0290 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 1.6354 L22: 1.7552 REMARK 3 L33: 0.8492 L12: 0.6870 REMARK 3 L13: 0.1032 L23: 1.1561 REMARK 3 S TENSOR REMARK 3 S11: 0.2922 S12: -0.5289 S13: 0.1648 REMARK 3 S21: 0.1643 S22: -0.4388 S23: -0.1460 REMARK 3 S31: -0.0369 S32: -0.7140 S33: 0.1139 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'Y' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.8880 56.7451 16.3867 REMARK 3 T TENSOR REMARK 3 T11: 0.6741 T22: 0.6291 REMARK 3 T33: 0.4696 T12: -0.1241 REMARK 3 T13: 0.0479 T23: -0.0876 REMARK 3 L TENSOR REMARK 3 L11: 1.1546 L22: 0.7956 REMARK 3 L33: 0.1049 L12: 0.1278 REMARK 3 L13: -0.3051 L23: -0.1731 REMARK 3 S TENSOR REMARK 3 S11: 0.2087 S12: 0.0504 S13: -0.0690 REMARK 3 S21: 0.2226 S22: -0.1134 S23: 0.5242 REMARK 3 S31: -0.2430 S32: 0.0501 S33: 0.0857 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292120330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38301 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 42.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, CRANK REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, TRIS-HCL, KCL, MAGNESIUM REMARK 280 CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.11667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.23333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.17500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 130.29167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.05833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 GLN A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 THR A 9 REMARK 465 VAL A 110 REMARK 465 SER A 111 REMARK 465 GLU A 112 REMARK 465 GLY A 113 REMARK 465 ASP A 114 REMARK 465 ASN A 115 REMARK 465 TYR A 116 REMARK 465 ASP A 117 REMARK 465 LEU A 118 REMARK 465 PHE A 119 REMARK 465 ASN A 120 REMARK 465 ILE A 121 REMARK 465 GLU A 122 REMARK 465 GLU A 123 REMARK 465 TYR A 237 REMARK 465 GLN A 238 REMARK 465 LYS A 239 REMARK 465 GLU A 240 REMARK 465 ASN A 241 REMARK 465 LEU A 380 REMARK 465 VAL A 381 REMARK 465 LYS A 551 REMARK 465 LYS A 552 REMARK 465 LEU A 577 REMARK 465 LYS A 578 REMARK 465 TYR A 579 REMARK 465 HIS A 580 REMARK 465 HIS A 581 REMARK 465 HIS A 582 REMARK 465 HIS A 583 REMARK 465 HIS A 584 REMARK 465 HIS A 585 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 20 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 GLU A 356 CD OE1 OE2 REMARK 470 LEU A 403 CG CD1 CD2 REMARK 470 LYS A 481 CD CE NZ REMARK 470 ASN A 485 CG OD1 ND2 REMARK 470 ASN A 549 CG OD1 ND2 REMARK 470 ASN A 550 OD1 ND2 REMARK 470 ARG A 570 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 574 CG1 CG2 CD1 REMARK 470 GLU A 575 CG CD OE1 OE2 REMARK 470 DC Z 1 O5' C5' REMARK 470 DG Y 11 O5' C5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 215 41.68 -95.87 REMARK 500 LYS A 235 9.85 59.16 REMARK 500 GLU A 284 154.64 -48.79 REMARK 500 ASP A 285 -22.39 92.27 REMARK 500 ALA A 341 64.26 -167.50 REMARK 500 TRP A 376 -36.07 70.17 REMARK 500 ASN A 383 31.56 -140.86 REMARK 500 ARG A 394 -106.25 -91.03 REMARK 500 HIS A 440 -154.60 60.50 REMARK 500 GLU A 482 35.64 -74.10 REMARK 500 ASP A 486 -44.58 71.69 REMARK 500 THR A 554 -151.61 -80.35 REMARK 500 GLU A 575 34.18 -159.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 7QW5 A 1 579 UNP P43423 MTC1_GEOSE 1 579 DBREF 7QW5 Z 1 10 PDB 7QW5 7QW5 1 10 DBREF 7QW5 Y 11 20 PDB 7QW5 7QW5 11 20 SEQADV 7QW5 GLU A 195 UNP P43423 GLY 195 CONFLICT SEQADV 7QW5 HIS A 580 UNP P43423 EXPRESSION TAG SEQADV 7QW5 HIS A 581 UNP P43423 EXPRESSION TAG SEQADV 7QW5 HIS A 582 UNP P43423 EXPRESSION TAG SEQADV 7QW5 HIS A 583 UNP P43423 EXPRESSION TAG SEQADV 7QW5 HIS A 584 UNP P43423 EXPRESSION TAG SEQADV 7QW5 HIS A 585 UNP P43423 EXPRESSION TAG SEQRES 1 A 585 MET MET SER VAL GLN LYS ALA ASN THR VAL SER ARG GLN SEQRES 2 A 585 LYS ALA THR GLY ALA HIS PHE THR PRO ASP LYS LEU ALA SEQRES 3 A 585 GLU VAL ILE ALA LYS ARG ILE LEU ASP TYR PHE LYS GLY SEQRES 4 A 585 GLU LYS ASN ARG VAL ILE ARG VAL LEU ASP PRO ALA CYS SEQRES 5 A 585 GLY ASP GLY GLU LEU LEU LEU ALA ILE ASN LYS VAL ALA SEQRES 6 A 585 GLN SER MET ASN ILE GLN LEU GLU LEU ILE GLY VAL ASP SEQRES 7 A 585 PHE ASP ILE ASP ALA ILE ASN ILE ALA ASN GLU ARG LEU SEQRES 8 A 585 SER ARG SER GLY HIS LYS ASN PHE ARG LEU ILE ASN LYS SEQRES 9 A 585 ASP PHE LEU GLU MET VAL SER GLU GLY ASP ASN TYR ASP SEQRES 10 A 585 LEU PHE ASN ILE GLU GLU LEU GLU PRO VAL ASP ILE ILE SEQRES 11 A 585 ILE ALA ASN PRO PRO TYR VAL ARG THR GLN ILE LEU GLY SEQRES 12 A 585 ALA GLU LYS ALA GLN LYS LEU ARG GLU LYS PHE ASN LEU SEQRES 13 A 585 LYS GLY ARG VAL ASP LEU TYR GLN ALA PHE LEU VAL ALA SEQRES 14 A 585 MET THR GLN GLN LEU LYS SER ASN GLY ILE ILE GLY VAL SEQRES 15 A 585 ILE THR SER ASN ARG TYR LEU THR THR LYS GLY GLY GLU SEQRES 16 A 585 SER THR ARG LYS PHE LEU VAL SER ASN PHE ASN ILE LEU SEQRES 17 A 585 GLU ILE MET ASP LEU GLY ASP SER LYS PHE PHE GLU ALA SEQRES 18 A 585 ALA VAL LEU PRO ALA ILE PHE PHE GLY GLU LYS LYS ASN SEQRES 19 A 585 LYS GLU TYR GLN LYS GLU ASN SER ASN VAL PRO LYS PHE SEQRES 20 A 585 PHE LYS ILE TYR GLU GLN SER ASP ILE GLU ALA SER SER SEQRES 21 A 585 SER VAL ASN SER GLU PHE ASN SER LEU ILE GLU LEU LEU SEQRES 22 A 585 GLU VAL ASN LYS SER GLY LEU TYR SER VAL GLU ASP LYS SEQRES 23 A 585 THR TYR SER ILE SER LEU GLY LYS ILE ILE SER PRO GLU SEQRES 24 A 585 ASN TYR LYS GLU PRO TRP ILE LEU ALA THR GLU ASP GLU SEQRES 25 A 585 TYR GLU TRP PHE MET LYS VAL ASN GLN ASN ALA TYR GLY SEQRES 26 A 585 PHE ILE GLU ASP PHE ALA HIS VAL LYS VAL GLY ILE LYS SEQRES 27 A 585 THR THR ALA ASP SER VAL PHE ILE ARG SER ASP TRP GLY SEQRES 28 A 585 GLU LEU PRO GLU GLU GLN ILE PRO GLU ASP LYS LEU LEU SEQRES 29 A 585 ARG PRO ILE ILE SER ALA ASP GLN ALA ASN LYS TRP SER SEQRES 30 A 585 VAL SER LEU VAL GLY ASN ASN LYS LYS VAL LEU TYR THR SEQRES 31 A 585 HIS GLU ILE ARG ASP GLY GLN ILE LYS ALA ILE ASN LEU SEQRES 32 A 585 GLU GLU PHE PRO ARG ALA LYS ASN TYR LEU GLU SER HIS SEQRES 33 A 585 LYS GLU ARG LEU ALA SER ARG LYS TYR VAL LEU LYS ALA SEQRES 34 A 585 ASN ARG ASN TRP TYR GLU ILE TRP VAL PRO HIS ASP PRO SEQRES 35 A 585 SER LEU TRP ASP LYS PRO LYS ILE ILE PHE PRO ASP THR SEQRES 36 A 585 SER PRO GLU PRO LYS PHE PHE TYR GLU ASP LYS GLY SER SEQRES 37 A 585 VAL VAL ASP GLY ASN CYS TYR TRP ILE ILE PRO LYS LYS SEQRES 38 A 585 GLU ASN SER ASN ASP ILE LEU PHE LEU ILE MET GLY ILE SEQRES 39 A 585 CYS ASN SER LYS PHE MET SER LYS TYR HIS ASP ILE ALA SEQRES 40 A 585 PHE GLN ASN LYS LEU TYR ALA GLY ARG ARG ARG TYR LEU SEQRES 41 A 585 THR GLN TYR VAL ASN LYS TYR PRO ILE PRO ASP PRO GLU SEQRES 42 A 585 SER ILE TYR SER LYS GLU ILE ILE SER LEU VAL ARG GLU SEQRES 43 A 585 LEU VAL ASN ASN LYS LYS GLU THR GLN ASP ILE ASN GLU SEQRES 44 A 585 ILE GLU ASN ARG ILE GLU LYS LEU ILE LEU ARG ALA PHE SEQRES 45 A 585 ASP ILE GLU SER LEU LYS TYR HIS HIS HIS HIS HIS HIS SEQRES 1 Z 10 DC DG DA DT DC DG DA DT DG DC SEQRES 1 Y 10 DG DC DA DT DC DG DA DT DC DG HET SAH A 601 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 4 SAH C14 H20 N6 O5 S FORMUL 5 HOH *243(H2 O) HELIX 1 AA1 SER A 11 GLY A 17 1 7 HELIX 2 AA2 PRO A 22 PHE A 37 1 16 HELIX 3 AA3 GLY A 55 SER A 67 1 13 HELIX 4 AA4 ASP A 80 SER A 94 1 15 HELIX 5 AA5 ARG A 138 ASN A 155 1 18 HELIX 6 AA6 ASP A 161 GLN A 172 1 12 HELIX 7 AA7 ARG A 187 THR A 190 5 4 HELIX 8 AA8 THR A 191 GLY A 193 5 3 HELIX 9 AA9 GLY A 194 ASN A 204 1 11 HELIX 10 AB1 SER A 268 VAL A 275 5 8 HELIX 11 AB2 THR A 309 ASN A 322 1 14 HELIX 12 AB3 ILE A 327 PHE A 330 1 4 HELIX 13 AB4 ALA A 341 PHE A 345 1 5 HELIX 14 AB5 SER A 369 ALA A 373 5 5 HELIX 15 AB6 ASN A 402 GLU A 405 5 4 HELIX 16 AB7 PHE A 406 HIS A 416 1 11 HELIX 17 AB8 HIS A 416 SER A 422 1 7 HELIX 18 AB9 ARG A 423 ALA A 429 1 7 HELIX 19 AC1 ASP A 486 ASN A 496 1 11 HELIX 20 AC2 SER A 497 PHE A 508 1 12 HELIX 21 AC3 LEU A 512 ARG A 516 5 5 HELIX 22 AC4 LEU A 520 ASN A 525 1 6 HELIX 23 AC5 SER A 534 ASN A 550 1 17 HELIX 24 AC6 ASP A 556 ASP A 573 1 18 SHEET 1 AA111 PHE A 99 ILE A 102 0 SHEET 2 AA111 LEU A 72 VAL A 77 1 N GLY A 76 O ILE A 102 SHEET 3 AA111 ILE A 45 ASP A 49 1 N VAL A 47 O GLU A 73 SHEET 4 AA111 VAL A 127 ALA A 132 1 O ILE A 129 N ARG A 46 SHEET 5 AA111 LEU A 174 SER A 185 1 O LYS A 175 N VAL A 127 SHEET 6 AA111 PRO A 225 LYS A 232 -1 O ALA A 226 N THR A 184 SHEET 7 AA111 PHE A 205 ASP A 212 -1 N ASN A 206 O GLU A 231 SHEET 8 AA111 LYS A 246 GLU A 252 1 O PHE A 248 N ASP A 212 SHEET 9 AA111 TYR A 288 LYS A 294 -1 O GLY A 293 N PHE A 247 SHEET 10 AA111 GLY A 279 TYR A 281 -1 N TYR A 281 O TYR A 288 SHEET 11 AA111 VAL A 262 ASN A 263 1 N ASN A 263 O LEU A 280 SHEET 1 AA2 2 GLY A 325 PHE A 326 0 SHEET 2 AA2 2 PRO A 528 ILE A 529 -1 O ILE A 529 N GLY A 325 SHEET 1 AA3 4 ALA A 331 VAL A 335 0 SHEET 2 AA3 4 CYS A 474 PRO A 479 -1 O TRP A 476 N LYS A 334 SHEET 3 AA3 4 LYS A 449 PRO A 453 -1 N ILE A 450 O ILE A 477 SHEET 4 AA3 4 PHE A 462 GLU A 464 -1 O PHE A 462 N ILE A 451 SHEET 1 AA4 4 ILE A 346 ARG A 347 0 SHEET 2 AA4 4 LYS A 386 LEU A 388 -1 O LYS A 386 N ARG A 347 SHEET 3 AA4 4 LEU A 364 ILE A 368 -1 N ARG A 365 O VAL A 387 SHEET 4 AA4 4 VAL A 469 VAL A 470 1 O VAL A 469 N PRO A 366 SHEET 1 AA5 2 HIS A 391 ILE A 393 0 SHEET 2 AA5 2 ILE A 398 ALA A 400 -1 O LYS A 399 N GLU A 392 SHEET 1 AA6 2 THR A 455 SER A 456 0 SHEET 2 AA6 2 ARG A 517 ARG A 518 -1 O ARG A 517 N SER A 456 CRYST1 87.040 87.040 156.350 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011489 0.006633 0.000000 0.00000 SCALE2 0.000000 0.013266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006396 0.00000