HEADER RNA 27-JAN-22 7QY5 TITLE CRYSTAL STRUCTURE OF THE S.POMBE ARS2-RED1 COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NURS COMPLEX SUBUNIT PIR2; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA ELIMINATION DEFECTIVE PROTEIN RED1; COMPND 7 CHAIN: F, G; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: NURS COMPLEX SUBUNIT PIR2; COMPND 11 CHAIN: B, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: PIR2, ARS2, SPBC725.08; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 13 ORGANISM_TAXID: 4896; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 16 ORGANISM_COMMON: FISSION YEAST; SOURCE 17 ORGANISM_TAXID: 4896; SOURCE 18 STRAIN: 972 / ATCC 24843; SOURCE 19 GENE: PIR2, ARS2, SPBC725.08; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS RNA DEGRADATION, RNA TARGETING COMPLEX, RNA EXPDTA X-RAY DIFFRACTION AUTHOR A.E.FOUCHER,J.KADLEC REVDAT 2 01-MAY-24 7QY5 1 REMARK REVDAT 1 16-NOV-22 7QY5 0 JRNL AUTH A.E.FOUCHER,L.TOUAT-TODESCHINI,A.B.JUAREZ-MARTINEZ, JRNL AUTH 2 A.RAKITCH,H.LAROUSSI,C.KARCZEWSKI,S.ACAJJAOUI,M.SOLER-LOPEZ, JRNL AUTH 3 S.CUSACK,C.D.MACKERETH,A.VERDEL,J.KADLEC JRNL TITL STRUCTURAL ANALYSIS OF RED1 AS A CONSERVED SCAFFOLD OF THE JRNL TITL 2 RNA-TARGETING MTREC/PAXT COMPLEX. JRNL REF NAT COMMUN V. 13 4969 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36002457 JRNL DOI 10.1038/S41467-022-32542-3 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.0 REMARK 3 NUMBER OF REFLECTIONS : 25473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1313 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 6 REMARK 3 BIN FREE R VALUE : 0.5510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7172 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.488 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.401 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.803 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7334 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6721 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9923 ; 1.375 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15521 ; 1.163 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 868 ; 6.513 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 430 ;31.291 ;23.395 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1281 ;16.709 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ; 8.267 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 944 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8306 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1710 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7QY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26786 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 84.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.0 REMARK 200 DATA REDUNDANCY : 5.560 REMARK 200 R MERGE (I) : 0.29000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 18.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM AMMONIUM FORMATE, 20% PEG3350, REMARK 280 PH 8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 278.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.14050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, F, G, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 64 REMARK 465 ALA A 65 REMARK 465 MET A 66 REMARK 465 GLU A 67 REMARK 465 PRO A 68 REMARK 465 GLU A 183 REMARK 465 GLY C 64 REMARK 465 ALA C 65 REMARK 465 MET C 66 REMARK 465 GLU C 67 REMARK 465 PRO C 68 REMARK 465 LEU C 69 REMARK 465 ILE C 94 REMARK 465 SER C 95 REMARK 465 GLU C 183 REMARK 465 LYS F 20 REMARK 465 ASN F 21 REMARK 465 GLU F 22 REMARK 465 GLU F 23 REMARK 465 ASP F 24 REMARK 465 GLU F 25 REMARK 465 SER F 26 REMARK 465 ASN F 27 REMARK 465 ASP F 28 REMARK 465 SER F 29 REMARK 465 ASP F 30 REMARK 465 LYS F 31 REMARK 465 GLU F 38 REMARK 465 ASP F 39 REMARK 465 ASP F 40 REMARK 465 LYS G 20 REMARK 465 ASN G 21 REMARK 465 GLU G 22 REMARK 465 GLU G 23 REMARK 465 ASP G 24 REMARK 465 GLU G 25 REMARK 465 SER G 26 REMARK 465 ASN G 27 REMARK 465 ASP G 28 REMARK 465 SER G 29 REMARK 465 ASP G 30 REMARK 465 GLU G 38 REMARK 465 ASP G 39 REMARK 465 ASP G 40 REMARK 465 MET B 203 REMARK 465 GLU B 204 REMARK 465 MET B 205 REMARK 465 PRO B 206 REMARK 465 ASP B 360 REMARK 465 ASP B 361 REMARK 465 ASP B 362 REMARK 465 ASP B 363 REMARK 465 SER B 531 REMARK 465 ALA B 532 REMARK 465 TRP B 533 REMARK 465 SER B 534 REMARK 465 HIS B 535 REMARK 465 PRO B 536 REMARK 465 GLN B 537 REMARK 465 PHE B 538 REMARK 465 GLU B 539 REMARK 465 LYS B 540 REMARK 465 MET D 203 REMARK 465 GLU D 204 REMARK 465 MET D 205 REMARK 465 PRO D 206 REMARK 465 LYS D 359 REMARK 465 ASP D 360 REMARK 465 ASP D 361 REMARK 465 GLY D 421 REMARK 465 SER D 531 REMARK 465 ALA D 532 REMARK 465 TRP D 533 REMARK 465 SER D 534 REMARK 465 HIS D 535 REMARK 465 PRO D 536 REMARK 465 GLN D 537 REMARK 465 PHE D 538 REMARK 465 GLU D 539 REMARK 465 LYS D 540 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 97 47.56 -86.39 REMARK 500 THR A 98 -45.60 58.19 REMARK 500 ASP A 141 95.52 177.31 REMARK 500 GLN A 178 137.77 -179.91 REMARK 500 THR C 98 -50.97 56.50 REMARK 500 ASP C 141 117.45 -164.03 REMARK 500 ARG C 146 70.84 -115.22 REMARK 500 GLN C 178 145.53 179.87 REMARK 500 ASN B 261 150.08 176.22 REMARK 500 THR B 386 67.33 33.06 REMARK 500 PHE B 389 -36.37 -39.17 REMARK 500 SER B 405 54.43 -141.68 REMARK 500 VAL B 420 70.00 -111.64 REMARK 500 ASP B 470 -106.44 -147.86 REMARK 500 ALA B 482 22.32 -153.94 REMARK 500 HIS B 499 38.82 -93.14 REMARK 500 HIS D 228 39.07 73.51 REMARK 500 ASN D 261 -179.09 178.80 REMARK 500 THR D 303 -156.82 -101.27 REMARK 500 HIS D 304 47.75 22.95 REMARK 500 ALA D 356 -166.47 -72.49 REMARK 500 VAL D 384 -62.27 -109.44 REMARK 500 GLU D 440 44.93 -140.91 REMARK 500 HIS D 499 43.95 -88.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 476 SG REMARK 620 2 CYS B 481 SG 131.3 REMARK 620 3 HIS B 494 NE2 113.8 100.9 REMARK 620 4 HIS B 499 NE2 108.9 96.1 101.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 476 SG REMARK 620 2 CYS D 481 SG 125.6 REMARK 620 3 HIS D 499 NE2 118.8 90.3 REMARK 620 N 1 2 DBREF 7QY5 A 68 183 UNP O94326 PIR2_SCHPO 68 183 DBREF 7QY5 C 68 183 UNP O94326 PIR2_SCHPO 68 183 DBREF 7QY5 F 20 40 PDB 7QY5 7QY5 20 40 DBREF 7QY5 G 20 40 PDB 7QY5 7QY5 20 40 DBREF 7QY5 B 206 530 UNP O94326 PIR2_SCHPO 206 530 DBREF 7QY5 D 206 530 UNP O94326 PIR2_SCHPO 206 530 SEQADV 7QY5 GLY A 64 UNP O94326 EXPRESSION TAG SEQADV 7QY5 ALA A 65 UNP O94326 EXPRESSION TAG SEQADV 7QY5 MET A 66 UNP O94326 EXPRESSION TAG SEQADV 7QY5 GLU A 67 UNP O94326 EXPRESSION TAG SEQADV 7QY5 GLY C 64 UNP O94326 EXPRESSION TAG SEQADV 7QY5 ALA C 65 UNP O94326 EXPRESSION TAG SEQADV 7QY5 MET C 66 UNP O94326 EXPRESSION TAG SEQADV 7QY5 GLU C 67 UNP O94326 EXPRESSION TAG SEQADV 7QY5 MET B 203 UNP O94326 INITIATING METHIONINE SEQADV 7QY5 GLU B 204 UNP O94326 EXPRESSION TAG SEQADV 7QY5 MET B 205 UNP O94326 EXPRESSION TAG SEQADV 7QY5 SER B 531 UNP O94326 EXPRESSION TAG SEQADV 7QY5 ALA B 532 UNP O94326 EXPRESSION TAG SEQADV 7QY5 TRP B 533 UNP O94326 EXPRESSION TAG SEQADV 7QY5 SER B 534 UNP O94326 EXPRESSION TAG SEQADV 7QY5 HIS B 535 UNP O94326 EXPRESSION TAG SEQADV 7QY5 PRO B 536 UNP O94326 EXPRESSION TAG SEQADV 7QY5 GLN B 537 UNP O94326 EXPRESSION TAG SEQADV 7QY5 PHE B 538 UNP O94326 EXPRESSION TAG SEQADV 7QY5 GLU B 539 UNP O94326 EXPRESSION TAG SEQADV 7QY5 LYS B 540 UNP O94326 EXPRESSION TAG SEQADV 7QY5 MET D 203 UNP O94326 INITIATING METHIONINE SEQADV 7QY5 GLU D 204 UNP O94326 EXPRESSION TAG SEQADV 7QY5 MET D 205 UNP O94326 EXPRESSION TAG SEQADV 7QY5 SER D 531 UNP O94326 EXPRESSION TAG SEQADV 7QY5 ALA D 532 UNP O94326 EXPRESSION TAG SEQADV 7QY5 TRP D 533 UNP O94326 EXPRESSION TAG SEQADV 7QY5 SER D 534 UNP O94326 EXPRESSION TAG SEQADV 7QY5 HIS D 535 UNP O94326 EXPRESSION TAG SEQADV 7QY5 PRO D 536 UNP O94326 EXPRESSION TAG SEQADV 7QY5 GLN D 537 UNP O94326 EXPRESSION TAG SEQADV 7QY5 PHE D 538 UNP O94326 EXPRESSION TAG SEQADV 7QY5 GLU D 539 UNP O94326 EXPRESSION TAG SEQADV 7QY5 LYS D 540 UNP O94326 EXPRESSION TAG SEQRES 1 A 120 GLY ALA MET GLU PRO LEU ILE ASP PRO TYR THR GLN THR SEQRES 2 A 120 ASN ALA VAL SER TYR GLU ARG PHE ILE ARG TRP TYR SER SEQRES 3 A 120 LYS GLU ASN HIS ILE SER ALA THR THR GLU ASP LEU TYR SEQRES 4 A 120 ASN SER LEU HIS GLY THR TYR ASN ASN TYR LYS GLN ASP SEQRES 5 A 120 LEU TYR ALA ARG THR ALA ARG SER PHE VAL GLU SER HIS SEQRES 6 A 120 CYS ASP GLU ALA TRP PHE GLU ASP SER TYR TRP VAL ASP SEQRES 7 A 120 GLU SER GLN GLY ARG VAL LEU GLU VAL SER GLU ASN GLU SEQRES 8 A 120 LYS SER TYR ARG ARG ALA LEU TYR ASP LYS PHE MET ASP SEQRES 9 A 120 ARG LEU ASP ALA GLY TYR TYR ASP ASP PHE GLN LEU PRO SEQRES 10 A 120 THR ALA GLU SEQRES 1 C 120 GLY ALA MET GLU PRO LEU ILE ASP PRO TYR THR GLN THR SEQRES 2 C 120 ASN ALA VAL SER TYR GLU ARG PHE ILE ARG TRP TYR SER SEQRES 3 C 120 LYS GLU ASN HIS ILE SER ALA THR THR GLU ASP LEU TYR SEQRES 4 C 120 ASN SER LEU HIS GLY THR TYR ASN ASN TYR LYS GLN ASP SEQRES 5 C 120 LEU TYR ALA ARG THR ALA ARG SER PHE VAL GLU SER HIS SEQRES 6 C 120 CYS ASP GLU ALA TRP PHE GLU ASP SER TYR TRP VAL ASP SEQRES 7 C 120 GLU SER GLN GLY ARG VAL LEU GLU VAL SER GLU ASN GLU SEQRES 8 C 120 LYS SER TYR ARG ARG ALA LEU TYR ASP LYS PHE MET ASP SEQRES 9 C 120 ARG LEU ASP ALA GLY TYR TYR ASP ASP PHE GLN LEU PRO SEQRES 10 C 120 THR ALA GLU SEQRES 1 F 21 LYS ASN GLU GLU ASP GLU SER ASN ASP SER ASP LYS GLU SEQRES 2 F 21 ASP GLY GLU ILE SER GLU ASP ASP SEQRES 1 G 21 LYS ASN GLU GLU ASP GLU SER ASN ASP SER ASP LYS GLU SEQRES 2 G 21 ASP GLY GLU ILE SER GLU ASP ASP SEQRES 1 B 338 MET GLU MET PRO GLN LEU SER LYS TRP ASN GLN ASP SER SEQRES 2 B 338 ARG ASN ASP ALA MET GLU ASN THR LEU LEU VAL SER HIS SEQRES 3 B 338 VAL LEU PRO ASN ILE SER VAL ALA GLN ILE HIS ASN ALA SEQRES 4 B 338 LEU ASP GLY ILE SER PHE VAL GLN HIS PHE SER LEU SER SEQRES 5 B 338 THR ILE ASN LEU ILE LYS ASN ASP GLU ARG SER LEU TRP SEQRES 6 B 338 VAL HIS PHE LYS ALA GLY THR ASN MET ASP GLY ALA LYS SEQRES 7 B 338 GLU ALA VAL ASP GLY ILE GLN LEU ASP SER ASN PHE THR SEQRES 8 B 338 ILE GLU SER GLU ASN PRO LYS ILE PRO THR HIS THR HIS SEQRES 9 B 338 PRO ILE PRO ILE PHE GLU ILE ALA SER SER GLU GLN THR SEQRES 10 B 338 CYS LYS ASN LEU LEU GLU LYS LEU ILE ARG PHE ILE ASP SEQRES 11 B 338 ARG ALA SER THR LYS TYR SER LEU PRO ASN ASP ALA ALA SEQRES 12 B 338 GLN ARG ILE GLU ASP ARG LEU LYS THR HIS ALA SER MET SEQRES 13 B 338 LYS ASP ASP ASP ASP LYS PRO THR ASN PHE HIS ASP ILE SEQRES 14 B 338 ARG LEU SER ASP LEU TYR ALA GLU TYR LEU ARG GLN VAL SEQRES 15 B 338 ALA THR PHE ASP PHE TRP THR SER LYS GLU TYR GLU SER SEQRES 16 B 338 LEU ILE ALA LEU LEU GLN ASP SER PRO ALA GLY TYR SER SEQRES 17 B 338 ARG LYS LYS PHE ASN PRO SER LYS GLU VAL GLY GLN GLU SEQRES 18 B 338 GLU ASN ILE TRP LEU SER ASP LEU GLU ASN ASN PHE ALA SEQRES 19 B 338 CYS LEU LEU GLU PRO GLU ASN VAL ASP ILE LYS ALA LYS SEQRES 20 B 338 GLY ALA LEU PRO VAL GLU ASP PHE ILE ASN ASN GLU LEU SEQRES 21 B 338 ASP SER VAL ILE MET LYS GLU ASP GLU GLN LYS TYR ARG SEQRES 22 B 338 CYS HIS VAL GLY THR CYS ALA LYS LEU PHE LEU GLY PRO SEQRES 23 B 338 GLU PHE VAL ARG LYS HIS ILE ASN LYS LYS HIS LYS ASP SEQRES 24 B 338 TRP LEU ASP HIS ILE LYS LYS VAL ALA ILE CYS LEU TYR SEQRES 25 B 338 GLY TYR VAL LEU ASP PRO CYS ARG ALA MET ASP PRO LYS SEQRES 26 B 338 VAL VAL SER SER ALA TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 D 338 MET GLU MET PRO GLN LEU SER LYS TRP ASN GLN ASP SER SEQRES 2 D 338 ARG ASN ASP ALA MET GLU ASN THR LEU LEU VAL SER HIS SEQRES 3 D 338 VAL LEU PRO ASN ILE SER VAL ALA GLN ILE HIS ASN ALA SEQRES 4 D 338 LEU ASP GLY ILE SER PHE VAL GLN HIS PHE SER LEU SER SEQRES 5 D 338 THR ILE ASN LEU ILE LYS ASN ASP GLU ARG SER LEU TRP SEQRES 6 D 338 VAL HIS PHE LYS ALA GLY THR ASN MET ASP GLY ALA LYS SEQRES 7 D 338 GLU ALA VAL ASP GLY ILE GLN LEU ASP SER ASN PHE THR SEQRES 8 D 338 ILE GLU SER GLU ASN PRO LYS ILE PRO THR HIS THR HIS SEQRES 9 D 338 PRO ILE PRO ILE PHE GLU ILE ALA SER SER GLU GLN THR SEQRES 10 D 338 CYS LYS ASN LEU LEU GLU LYS LEU ILE ARG PHE ILE ASP SEQRES 11 D 338 ARG ALA SER THR LYS TYR SER LEU PRO ASN ASP ALA ALA SEQRES 12 D 338 GLN ARG ILE GLU ASP ARG LEU LYS THR HIS ALA SER MET SEQRES 13 D 338 LYS ASP ASP ASP ASP LYS PRO THR ASN PHE HIS ASP ILE SEQRES 14 D 338 ARG LEU SER ASP LEU TYR ALA GLU TYR LEU ARG GLN VAL SEQRES 15 D 338 ALA THR PHE ASP PHE TRP THR SER LYS GLU TYR GLU SER SEQRES 16 D 338 LEU ILE ALA LEU LEU GLN ASP SER PRO ALA GLY TYR SER SEQRES 17 D 338 ARG LYS LYS PHE ASN PRO SER LYS GLU VAL GLY GLN GLU SEQRES 18 D 338 GLU ASN ILE TRP LEU SER ASP LEU GLU ASN ASN PHE ALA SEQRES 19 D 338 CYS LEU LEU GLU PRO GLU ASN VAL ASP ILE LYS ALA LYS SEQRES 20 D 338 GLY ALA LEU PRO VAL GLU ASP PHE ILE ASN ASN GLU LEU SEQRES 21 D 338 ASP SER VAL ILE MET LYS GLU ASP GLU GLN LYS TYR ARG SEQRES 22 D 338 CYS HIS VAL GLY THR CYS ALA LYS LEU PHE LEU GLY PRO SEQRES 23 D 338 GLU PHE VAL ARG LYS HIS ILE ASN LYS LYS HIS LYS ASP SEQRES 24 D 338 TRP LEU ASP HIS ILE LYS LYS VAL ALA ILE CYS LEU TYR SEQRES 25 D 338 GLY TYR VAL LEU ASP PRO CYS ARG ALA MET ASP PRO LYS SEQRES 26 D 338 VAL VAL SER SER ALA TRP SER HIS PRO GLN PHE GLU LYS HET ZN B 601 1 HET ZN D 601 1 HETNAM ZN ZINC ION FORMUL 7 ZN 2(ZN 2+) HELIX 1 AA1 ASP A 71 GLN A 75 5 5 HELIX 2 AA2 SER A 80 ASN A 92 1 13 HELIX 3 AA3 LEU A 105 CYS A 129 1 25 HELIX 4 AA4 GLU A 131 TRP A 139 1 9 HELIX 5 AA5 ASP A 141 GLY A 145 5 5 HELIX 6 AA6 SER A 151 ALA A 171 1 21 HELIX 7 AA7 SER C 80 ASN C 92 1 13 HELIX 8 AA8 ASP C 100 LEU C 105 1 6 HELIX 9 AA9 LEU C 105 CYS C 129 1 25 HELIX 10 AB1 GLU C 131 TRP C 139 1 9 HELIX 11 AB2 SER C 151 ALA C 171 1 21 HELIX 12 AB3 SER B 209 GLU B 221 1 13 HELIX 13 AB4 SER B 234 GLY B 244 1 11 HELIX 14 AB5 ASP B 277 ASP B 284 1 8 HELIX 15 AB6 PHE B 311 SER B 315 5 5 HELIX 16 AB7 SER B 316 TYR B 338 1 23 HELIX 17 AB8 ASP B 343 HIS B 355 1 13 HELIX 18 AB9 ASN B 367 VAL B 384 1 18 HELIX 19 AC1 SER B 397 LEU B 402 1 6 HELIX 20 AC2 GLY B 421 GLU B 440 1 20 HELIX 21 AC3 PRO B 441 VAL B 444 5 4 HELIX 22 AC4 ILE B 446 GLY B 450 5 5 HELIX 23 AC5 PRO B 453 VAL B 465 1 13 HELIX 24 AC6 GLY B 487 LYS B 498 1 12 HELIX 25 AC7 HIS B 499 LEU B 518 1 20 HELIX 26 AC8 ASP B 525 VAL B 529 5 5 HELIX 27 AC9 SER D 209 GLU D 221 1 13 HELIX 28 AD1 SER D 234 GLY D 244 1 11 HELIX 29 AD2 ASN D 275 ASP D 284 1 10 HELIX 30 AD3 PHE D 311 SER D 315 5 5 HELIX 31 AD4 SER D 316 TYR D 338 1 23 HELIX 32 AD5 ASP D 343 HIS D 355 1 13 HELIX 33 AD6 ASN D 367 VAL D 384 1 18 HELIX 34 AD7 SER D 397 GLN D 403 1 7 HELIX 35 AD8 PRO D 416 VAL D 420 5 5 HELIX 36 AD9 GLU D 423 GLU D 440 1 18 HELIX 37 AE1 PRO D 441 VAL D 444 5 4 HELIX 38 AE2 ILE D 446 GLY D 450 5 5 HELIX 39 AE3 PRO D 453 VAL D 465 1 13 HELIX 40 AE4 GLY D 487 LYS D 498 1 12 HELIX 41 AE5 HIS D 499 LEU D 518 1 20 HELIX 42 AE6 ASP D 525 VAL D 529 5 5 SHEET 1 AA1 3 THR B 223 VAL B 229 0 SHEET 2 AA1 3 ARG B 264 PHE B 270 -1 O VAL B 268 N LEU B 224 SHEET 3 AA1 3 VAL B 248 LEU B 253 -1 N HIS B 250 O HIS B 269 SHEET 1 AA2 2 GLN B 287 ASP B 289 0 SHEET 2 AA2 2 PHE B 292 THR B 293 -1 O PHE B 292 N LEU B 288 SHEET 1 AA3 2 ILE B 308 ILE B 310 0 SHEET 2 AA3 2 TYR B 409 ARG B 411 1 O SER B 410 N ILE B 310 SHEET 1 AA4 2 PHE B 387 ASP B 388 0 SHEET 2 AA4 2 LYS B 393 GLU B 394 -1 O LYS B 393 N ASP B 388 SHEET 1 AA5 3 ILE B 466 LYS B 468 0 SHEET 2 AA5 3 TYR B 474 CYS B 476 -1 O ARG B 475 N MET B 467 SHEET 3 AA5 3 LEU B 484 PHE B 485 -1 O PHE B 485 N TYR B 474 SHEET 1 AA6 4 VAL D 248 LEU D 253 0 SHEET 2 AA6 4 ARG D 264 PHE D 270 -1 O HIS D 269 N HIS D 250 SHEET 3 AA6 4 THR D 223 VAL D 229 -1 N VAL D 226 O LEU D 266 SHEET 4 AA6 4 SER D 296 GLU D 297 -1 O GLU D 297 N LEU D 225 SHEET 1 AA7 2 GLN D 287 ASP D 289 0 SHEET 2 AA7 2 PHE D 292 THR D 293 -1 O PHE D 292 N ASP D 289 SHEET 1 AA8 2 ILE D 308 ILE D 310 0 SHEET 2 AA8 2 TYR D 409 ARG D 411 1 O SER D 410 N ILE D 310 SHEET 1 AA9 3 ILE D 466 ASP D 470 0 SHEET 2 AA9 3 LYS D 473 CYS D 476 -1 O ARG D 475 N MET D 467 SHEET 3 AA9 3 LEU D 484 PHE D 485 -1 O PHE D 485 N TYR D 474 LINK SG CYS B 476 ZN ZN B 601 1555 1555 1.97 LINK SG CYS B 481 ZN ZN B 601 1555 1555 2.33 LINK NE2 HIS B 494 ZN ZN B 601 1555 1555 2.12 LINK NE2 HIS B 499 ZN ZN B 601 1555 1555 2.33 LINK SG CYS D 476 ZN ZN D 601 1555 1555 2.39 LINK SG CYS D 481 ZN ZN D 601 1555 1555 2.55 LINK NE2 HIS D 499 ZN ZN D 601 1555 1555 2.64 CRYST1 64.670 128.281 89.261 90.00 108.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015463 0.000000 0.005049 0.00000 SCALE2 0.000000 0.007795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011785 0.00000