HEADER SIGNALING PROTEIN 30-JAN-22 7QZ2 TITLE CRYSTAL STRUCTURE OF GACS D1 DOMAIN IN COMPLEX WITH BEF3- COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.13.3; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE PROTEIN SEQUENCE IS PRECEDED BY A HISTIDINE TAG COMPND 7 FOLLOWED BY RESIDUES FROM THE TEMPLATE PLASMID AND A TEV PROTEASE COMPND 8 CLIVAGE SITE ENLYFQS. WE DON'T SEE THOSE RESIDUES IN THE STRUCTURE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: GACS, PAMH19_4268; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS TRANSMITTER DOMAIN HISTIDINE KINASE PSEUDOMONAS AERUGINOSA, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.FADEL,V.BASSIM,T.BOTZANOWSKI,V.I.FRANCIS,P.LEGRAND,S.L.PORTER, AUTHOR 2 Y.BOURNE,S.CIANFERANI,F.VINCENT REVDAT 3 07-FEB-24 7QZ2 1 REMARK REVDAT 2 25-JAN-23 7QZ2 1 JRNL REVDAT 1 06-JUL-22 7QZ2 0 JRNL AUTH F.FADEL,V.BASSIM,V.I.FRANCIS,S.L.PORTER,T.BOTZANOWSKI, JRNL AUTH 2 P.LEGRAND,M.M.PEREZ,Y.BOURNE,S.CIANFERANI,F.VINCENT JRNL TITL INSIGHTS INTO THE ATYPICAL AUTOKINASE ACTIVITY OF THE JRNL TITL 2 PSEUDOMONAS AERUGINOSA GACS HISTIDINE KINASE AND ITS JRNL TITL 3 INTERACTION WITH RETS. JRNL REF STRUCTURE V. 30 1285 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 35767996 JRNL DOI 10.1016/J.STR.2022.06.002 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 983 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1325 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2013 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 201 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.998 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2094 ; 0.011 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1925 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2854 ; 1.330 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4519 ; 0.908 ; 1.628 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 6.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;29.887 ;22.087 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;11.784 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.146 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2374 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 338 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1060 ; 2.067 ; 2.153 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1059 ; 2.064 ; 2.150 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1327 ; 3.002 ; 3.209 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1328 ; 3.001 ; 3.212 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1034 ; 2.958 ; 2.547 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1029 ; 2.961 ; 2.552 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1518 ; 4.594 ; 3.683 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2316 ; 6.363 ;26.536 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2261 ; 6.282 ;26.092 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7QZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292120664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9799 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20248 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 46.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.69800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MMN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TO 1.2 M NA ACETATE AND 0.1 M REMARK 280 HEPES FROM PH 7 TO PH 8 IN PRESENCE OF 50 MM CADMIUM SULFATE REMARK 280 THEN SOAKING THOSE CRYSTALS INTO IN 5 MM BESO4, 30 MM NAF, 7 MM REMARK 280 MGCL2 AND 10 MM TRIS-HCL PH 9, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.67100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.67100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.84750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.00800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.84750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.00800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.67100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.84750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.00800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.67100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.84750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.00800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 986 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 638 REMARK 465 GLY A 639 REMARK 465 HIS A 640 REMARK 465 HIS A 641 REMARK 465 HIS A 642 REMARK 465 HIS A 643 REMARK 465 HIS A 644 REMARK 465 HIS A 645 REMARK 465 SER A 646 REMARK 465 SER A 647 REMARK 465 GLY A 648 REMARK 465 VAL A 649 REMARK 465 ASP A 650 REMARK 465 LEU A 651 REMARK 465 GLY A 652 REMARK 465 THR A 653 REMARK 465 GLU A 654 REMARK 465 ASN A 655 REMARK 465 LEU A 656 REMARK 465 TYR A 657 REMARK 465 PHE A 658 REMARK 465 GLN A 659 REMARK 465 SER A 660 REMARK 465 MET A 661 REMARK 465 GLN A 791 REMARK 465 SER A 792 REMARK 465 LEU A 793 REMARK 465 MET B 638 REMARK 465 GLY B 639 REMARK 465 HIS B 640 REMARK 465 HIS B 641 REMARK 465 HIS B 642 REMARK 465 HIS B 643 REMARK 465 HIS B 644 REMARK 465 HIS B 645 REMARK 465 SER B 646 REMARK 465 SER B 647 REMARK 465 GLY B 648 REMARK 465 VAL B 649 REMARK 465 ASP B 650 REMARK 465 LEU B 651 REMARK 465 GLY B 652 REMARK 465 THR B 653 REMARK 465 GLU B 654 REMARK 465 ASN B 655 REMARK 465 LEU B 656 REMARK 465 TYR B 657 REMARK 465 PHE B 658 REMARK 465 GLN B 659 REMARK 465 SER B 660 REMARK 465 MET B 661 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 950 O HOH B 950 3655 2.12 REMARK 500 O HOH A 963 O HOH A 963 3655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 750 N HIS B 750 CA 0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 738 74.58 78.92 REMARK 500 ALA A 751 47.22 -140.25 REMARK 500 GLU B 738 68.85 70.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 805 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 672 OD1 REMARK 620 2 ASP A 715 OD2 91.2 REMARK 620 3 GLN A 717 O 98.1 93.3 REMARK 620 4 HOH A 920 O 93.2 86.0 168.6 REMARK 620 5 HOH A 954 O 92.9 174.9 89.1 90.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 802 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 695 OD1 REMARK 620 2 ASP A 695 OD2 52.9 REMARK 620 3 GLU B 707 OE1 104.8 89.0 REMARK 620 4 GLU B 736 OE1 127.9 139.1 50.1 REMARK 620 5 GLU B 736 OE2 129.7 142.9 54.0 4.0 REMARK 620 6 HOH B 945 O 84.4 136.7 96.7 60.2 58.6 REMARK 620 7 HOH B 990 O 84.8 89.4 166.5 130.5 126.5 93.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 801 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 707 OE1 REMARK 620 2 ASP B 695 OD1 111.9 REMARK 620 3 ASP B 695 OD2 91.0 50.8 REMARK 620 4 HOH B 955 O 108.9 95.6 146.1 REMARK 620 5 HOH B 985 O 152.9 79.1 77.0 93.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 804 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 715 OD1 REMARK 620 2 BEF A 804 F1 91.1 REMARK 620 3 BEF A 804 F2 90.5 121.4 REMARK 620 4 BEF A 804 F3 88.6 118.5 120.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 803 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 738 OE1 REMARK 620 2 GLU A 738 OE2 55.3 REMARK 620 3 HOH A 952 O 83.8 90.5 REMARK 620 4 HOH A 955 O 97.9 93.6 175.8 REMARK 620 5 ASP B 766 OD1 28.6 65.6 111.0 70.1 REMARK 620 6 ASP B 766 OD2 28.1 63.2 111.2 70.1 2.5 REMARK 620 7 HOH B 972 O 88.0 141.9 95.9 80.4 77.1 79.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 672 OD1 REMARK 620 2 ASP B 715 OD2 85.8 REMARK 620 3 GLN B 717 O 92.2 91.5 REMARK 620 4 HOH B 934 O 90.9 85.3 175.4 REMARK 620 5 HOH B 960 O 97.2 176.9 88.0 95.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF B 801 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 715 OD1 REMARK 620 2 BEF B 801 F1 93.6 REMARK 620 3 BEF B 801 F2 91.4 120.3 REMARK 620 4 BEF B 801 F3 85.1 118.7 121.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZL8 RELATED DB: PDB REMARK 900 OBSOLETED DBREF1 7QZ2 A 662 793 UNP A0A0A8RMX6_PSEAI DBREF2 7QZ2 A A0A0A8RMX6 678 809 DBREF1 7QZ2 B 662 793 UNP A0A0A8RMX6_PSEAI DBREF2 7QZ2 B A0A0A8RMX6 678 809 SEQADV 7QZ2 MET A 638 UNP A0A0A8RMX INITIATING METHIONINE SEQADV 7QZ2 GLY A 639 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS A 640 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS A 641 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS A 642 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS A 643 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS A 644 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS A 645 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 SER A 646 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 SER A 647 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 GLY A 648 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 VAL A 649 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 ASP A 650 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 LEU A 651 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 GLY A 652 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 THR A 653 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 GLU A 654 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 ASN A 655 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 LEU A 656 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 TYR A 657 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 PHE A 658 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 GLN A 659 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 SER A 660 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 MET A 661 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 MET B 638 UNP A0A0A8RMX INITIATING METHIONINE SEQADV 7QZ2 GLY B 639 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS B 640 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS B 641 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS B 642 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS B 643 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS B 644 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 HIS B 645 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 SER B 646 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 SER B 647 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 GLY B 648 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 VAL B 649 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 ASP B 650 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 LEU B 651 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 GLY B 652 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 THR B 653 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 GLU B 654 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 ASN B 655 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 LEU B 656 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 TYR B 657 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 PHE B 658 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 GLN B 659 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 SER B 660 UNP A0A0A8RMX EXPRESSION TAG SEQADV 7QZ2 MET B 661 UNP A0A0A8RMX EXPRESSION TAG SEQRES 1 A 156 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP SEQRES 2 A 156 LEU GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY ARG SEQRES 3 A 156 PRO PRO ARG LEU LEU CYS VAL ASP ASP ASN PRO ALA ASN SEQRES 4 A 156 LEU LEU LEU VAL GLN THR LEU LEU SER ASP LEU GLY ALA SEQRES 5 A 156 GLN VAL THR ALA VAL ASP SER GLY TYR ALA ALA LEU GLU SEQRES 6 A 156 VAL VAL GLN ARG GLU ARG PHE ASP LEU VAL PHE MET ASP SEQRES 7 A 156 VAL GLN MET PRO GLY MET ASP GLY ARG GLN ALA THR GLU SEQRES 8 A 156 ALA ILE ARG ARG TRP GLU ALA GLU ARG GLU VAL SER PRO SEQRES 9 A 156 VAL PRO VAL ILE ALA LEU THR ALA HIS ALA LEU SER ASN SEQRES 10 A 156 GLU LYS ARG ALA LEU LEU GLN ALA GLY MET ASP ASP TYR SEQRES 11 A 156 LEU THR LYS PRO ILE ASP GLU GLN GLN LEU ALA GLN VAL SEQRES 12 A 156 VAL LEU LYS TRP THR GLY LEU SER LEU GLY GLN SER LEU SEQRES 1 B 156 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP SEQRES 2 B 156 LEU GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY ARG SEQRES 3 B 156 PRO PRO ARG LEU LEU CYS VAL ASP ASP ASN PRO ALA ASN SEQRES 4 B 156 LEU LEU LEU VAL GLN THR LEU LEU SER ASP LEU GLY ALA SEQRES 5 B 156 GLN VAL THR ALA VAL ASP SER GLY TYR ALA ALA LEU GLU SEQRES 6 B 156 VAL VAL GLN ARG GLU ARG PHE ASP LEU VAL PHE MET ASP SEQRES 7 B 156 VAL GLN MET PRO GLY MET ASP GLY ARG GLN ALA THR GLU SEQRES 8 B 156 ALA ILE ARG ARG TRP GLU ALA GLU ARG GLU VAL SER PRO SEQRES 9 B 156 VAL PRO VAL ILE ALA LEU THR ALA HIS ALA LEU SER ASN SEQRES 10 B 156 GLU LYS ARG ALA LEU LEU GLN ALA GLY MET ASP ASP TYR SEQRES 11 B 156 LEU THR LYS PRO ILE ASP GLU GLN GLN LEU ALA GLN VAL SEQRES 12 B 156 VAL LEU LYS TRP THR GLY LEU SER LEU GLY GLN SER LEU HET CD A 801 1 HET CD A 802 1 HET CD A 803 1 HET BEF A 804 4 HET MG A 805 1 HET BEF B 801 4 HET MG B 802 1 HETNAM CD CADMIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MG MAGNESIUM ION FORMUL 3 CD 3(CD 2+) FORMUL 6 BEF 2(BE F3 1-) FORMUL 7 MG 2(MG 2+) FORMUL 10 HOH *201(H2 O) HELIX 1 AA1 ASN A 673 LEU A 687 1 15 HELIX 2 AA2 SER A 696 GLU A 707 1 12 HELIX 3 AA3 ASP A 722 GLU A 738 1 17 HELIX 4 AA4 LEU A 752 ALA A 762 1 11 HELIX 5 AA5 ASP A 773 GLY A 786 1 14 HELIX 6 AA6 ASN B 673 LEU B 687 1 15 HELIX 7 AA7 SER B 696 GLU B 707 1 12 HELIX 8 AA8 ASP B 722 GLU B 738 1 17 HELIX 9 AA9 LEU B 752 ALA B 762 1 11 HELIX 10 AB1 ASP B 773 GLY B 786 1 14 HELIX 11 AB2 LEU B 789 LEU B 793 5 5 SHEET 1 AA1 5 GLN A 690 VAL A 694 0 SHEET 2 AA1 5 ARG A 666 VAL A 670 1 N LEU A 667 O THR A 692 SHEET 3 AA1 5 LEU A 711 MET A 714 1 O PHE A 713 N LEU A 668 SHEET 4 AA1 5 VAL A 744 THR A 748 1 O ILE A 745 N VAL A 712 SHEET 5 AA1 5 ASP A 766 THR A 769 1 O LEU A 768 N ALA A 746 SHEET 1 AA2 5 GLN B 690 VAL B 694 0 SHEET 2 AA2 5 ARG B 666 VAL B 670 1 N CYS B 669 O THR B 692 SHEET 3 AA2 5 LEU B 711 MET B 714 1 O PHE B 713 N LEU B 668 SHEET 4 AA2 5 VAL B 744 THR B 748 1 O ILE B 745 N VAL B 712 SHEET 5 AA2 5 ASP B 766 THR B 769 1 O ASP B 766 N ALA B 746 LINK OD1 ASP A 672 MG MG A 805 1555 1555 2.00 LINK OD1 ASP A 695 CD CD A 802 1555 1555 2.44 LINK OD2 ASP A 695 CD CD A 802 1555 1555 2.49 LINK OE1 GLU A 707 CD CD A 801 1555 1555 2.36 LINK OD1 ASP A 715 BE BEF A 804 1555 1555 2.07 LINK OD2 ASP A 715 MG MG A 805 1555 1555 1.97 LINK O GLN A 717 MG MG A 805 1555 1555 2.04 LINK OE1 GLU A 738 CD CD A 803 1555 1555 2.39 LINK OE2 GLU A 738 CD CD A 803 1555 1555 2.34 LINK CD CD A 801 OD1 ASP B 695 1555 1555 2.47 LINK CD CD A 801 OD2 ASP B 695 1555 1555 2.64 LINK CD CD A 801 O HOH B 955 1555 1555 2.46 LINK CD CD A 801 O HOH B 985 1555 1555 2.39 LINK CD CD A 802 OE1 GLU B 707 1555 1555 2.42 LINK CD CD A 802 OE1 GLU B 736 3655 1555 2.50 LINK CD CD A 802 OE2 GLU B 736 3655 1555 2.49 LINK CD CD A 802 O HOH B 945 1555 1555 2.22 LINK CD CD A 802 O HOH B 990 1555 3655 2.41 LINK CD CD A 803 O HOH A 952 1555 1555 1.88 LINK CD CD A 803 O HOH A 955 1555 3655 2.58 LINK CD CD A 803 OD1 ASP B 766 5455 1555 2.38 LINK CD CD A 803 OD2 ASP B 766 5455 1555 2.38 LINK CD CD A 803 O HOH B 972 1555 5545 2.06 LINK MG MG A 805 O HOH A 920 1555 1555 2.10 LINK MG MG A 805 O HOH A 954 1555 1555 2.07 LINK OD1 ASP B 672 MG MG B 802 1555 1555 2.06 LINK OD1 ASP B 715 BE BEF B 801 1555 1555 2.15 LINK OD2 ASP B 715 MG MG B 802 1555 1555 2.07 LINK O GLN B 717 MG MG B 802 1555 1555 2.07 LINK MG MG B 802 O HOH B 934 1555 1555 2.07 LINK MG MG B 802 O HOH B 960 1555 1555 2.05 CISPEP 1 LYS A 770 PRO A 771 0 -3.72 CISPEP 2 LYS B 770 PRO B 771 0 -3.92 CRYST1 69.695 74.016 93.342 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013511 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010713 0.00000