HEADER MEMBRANE PROTEIN 03-FEB-22 7R1V TITLE CRYSTAL STRUCTURE OF E.COLI BAMA BETA-BARREL IN COMPLEX WITH TITLE 2 DYNOBACTIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DYNOBACTIN A; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: BAMA, YAET, Z0188, ECS0179; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: PHOTORHABDUS AUSTRALIS; SOURCE 10 ORGANISM_TAXID: 286156 KEYWDS BETA-BARREL, OUTER MEMBRANE, PROTEIN INSERTION, PROTEIN FOLDING, KEYWDS 2 PROTEIN MATURATION, ANTIBIOTIC, NATURAL PRODUCT, CYCLIZED PEPTIDE, KEYWDS 3 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.P.JAKOB,S.HILLER,T.MAIER REVDAT 5 03-APR-24 7R1V 1 SOURCE REMARK DBREF REVDAT 4 31-JAN-24 7R1V 1 REMARK REVDAT 3 07-DEC-22 7R1V 1 JRNL REVDAT 2 30-NOV-22 7R1V 1 JRNL REVDAT 1 28-SEP-22 7R1V 0 JRNL AUTH R.D.MILLER,A.IINISHI,S.M.MODARESI,B.K.YOO,T.D.CURTIS, JRNL AUTH 2 P.J.LARIVIERE,L.LIANG,S.SON,S.NICOLAU,R.BARGABOS, JRNL AUTH 3 M.MORRISSETTE,M.F.GATES,N.PITT,R.P.JAKOB,P.RATH,T.MAIER, JRNL AUTH 4 A.G.MALYUTIN,J.T.KAISER,S.NILES,B.KARAVAS,M.GHIGLIERI, JRNL AUTH 5 S.E.J.BOWMAN,D.C.REES,S.HILLER,K.LEWIS JRNL TITL COMPUTATIONAL IDENTIFICATION OF A SYSTEMIC ANTIBIOTIC FOR JRNL TITL 2 GRAM-NEGATIVE BACTERIA. JRNL REF NAT MICROBIOL V. 7 1661 2022 JRNL REFN ESSN 2058-5276 JRNL PMID 36163500 JRNL DOI 10.1038/S41564-022-01227-4 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (18-SEP-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.52 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 400 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2602 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 380 REMARK 3 BIN R VALUE (WORKING SET) : 0.2505 REMARK 3 BIN FREE R VALUE : 0.4144 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 20 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 24.28390 REMARK 3 B22 (A**2) : 4.94080 REMARK 3 B33 (A**2) : -29.22470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.510 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.406 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.270 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.884 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5787 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10294 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1661 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 953 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3080 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 376 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3953 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.19 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.10 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|423 - A|454 } REMARK 3 ORIGIN FOR THE GROUP (A): 3.1109 8.3651 40.5182 REMARK 3 T TENSOR REMARK 3 T11: -0.3931 T22: -0.3598 REMARK 3 T33: 0.7718 T12: -0.0618 REMARK 3 T13: 0.1026 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 7.7279 L22: 4.6791 REMARK 3 L33: 12.2449 L12: -0.6473 REMARK 3 L13: -1.8744 L23: 0.1157 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: -1.0520 S13: 0.2489 REMARK 3 S21: 0.7302 S22: 0.1495 S23: 0.2809 REMARK 3 S31: -0.8323 S32: 0.5849 S33: -0.2212 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|455 - A|537 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.3114 18.2572 37.6747 REMARK 3 T TENSOR REMARK 3 T11: -0.4993 T22: -0.3570 REMARK 3 T33: 0.7373 T12: -0.0109 REMARK 3 T13: -0.0852 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 3.0727 L22: 4.3127 REMARK 3 L33: 0.5068 L12: 0.1343 REMARK 3 L13: 0.0743 L23: -1.7127 REMARK 3 S TENSOR REMARK 3 S11: -0.1861 S12: -0.6095 S13: -0.3997 REMARK 3 S21: 0.8144 S22: -0.0417 S23: -0.2571 REMARK 3 S31: 0.0162 S32: 0.0755 S33: 0.2278 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|538 - A|766 } REMARK 3 ORIGIN FOR THE GROUP (A): 8.8993 25.2404 20.6522 REMARK 3 T TENSOR REMARK 3 T11: -0.4272 T22: -0.3549 REMARK 3 T33: 0.5915 T12: 0.0207 REMARK 3 T13: 0.0285 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 3.8057 L22: 2.8219 REMARK 3 L33: 0.5000 L12: 0.0118 REMARK 3 L13: -0.3685 L23: -0.4003 REMARK 3 S TENSOR REMARK 3 S11: 0.0827 S12: 0.2052 S13: -0.0440 REMARK 3 S21: -0.0907 S22: -0.0362 S23: -0.2806 REMARK 3 S31: 0.0207 S32: -0.0498 S33: -0.0465 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|767 - A|809 } REMARK 3 ORIGIN FOR THE GROUP (A): -4.3410 17.2186 14.7744 REMARK 3 T TENSOR REMARK 3 T11: -0.4848 T22: -0.4250 REMARK 3 T33: 0.5508 T12: 0.0678 REMARK 3 T13: -0.0539 T23: -0.1320 REMARK 3 L TENSOR REMARK 3 L11: 13.0371 L22: 5.7125 REMARK 3 L33: 7.5492 L12: 5.3211 REMARK 3 L13: -6.2131 L23: -3.8595 REMARK 3 S TENSOR REMARK 3 S11: -0.1664 S12: 1.1215 S13: -0.5252 REMARK 3 S21: -0.5200 S22: 0.4822 S23: 0.4252 REMARK 3 S31: 0.3704 S32: -0.6516 S33: -0.3158 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE FULLY REFINED WITH ZERO REMARK 3 OCCUPANCY AT NUCLEAR POSITION. REFINEMENT NOTES. NUMBER OF REMARK 3 REFINEMENT NOTES : 1 NOTE 1 : IDEAL-DIST CONTACT TERM CONTACT REMARK 3 SETUP. ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 7R1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1292119238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19622 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 27.90 REMARK 200 R MERGE (I) : 0.21700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.57100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7NRF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M LITHIUM SULFATE, 0.02 M TRIS REMARK 280 PH7.5, 0.1 M SODIUM CITRATE PH 5.0, AND 20% (V/V) PEG300, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.89500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.27750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.66200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.27750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.89500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.66200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 DYNOBACTIN A IS A DECAPEPTIDE (1-WNSNVHSYRF-10) WITH 2 CLOSED REMARK 400 RINGS. ONE CARBON-CARBON BOND FORMED BETWEEN THE C6 OF TRP (W1) AND REMARK 400 THE BETA-CARBON OF ASN (N4). SECOND AN UNUSUAL NITROGEN-CARBON REMARK 400 LINKAGE FORMED BETWEEN THE IMIDAZOLE N-EPSILON-2 OF HIS (H6) AND REMARK 400 THE BETA-CARBON OF TYR (Y8). REMARK 400 REMARK 400 THE DYNOBACTIN A IS PEPTIDE-LIKE, A MEMBER OF ANTIBIOTIC CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: DYNOBACTIN A REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 419 REMARK 465 MET A 420 REMARK 465 ARG A 421 REMARK 465 ASN A 422 REMARK 465 GLN A 678 REMARK 465 ALA A 679 REMARK 465 SER A 680 REMARK 465 ASN A 681 REMARK 465 TYR A 682 REMARK 465 ASP A 683 REMARK 465 PRO A 684 REMARK 465 ASP A 685 REMARK 465 TYR A 686 REMARK 465 ASP A 687 REMARK 465 TYR A 688 REMARK 465 GLU A 689 REMARK 465 SER A 690 REMARK 465 ALA A 691 REMARK 465 THR A 692 REMARK 465 GLN A 693 REMARK 465 ASP A 694 REMARK 465 GLY A 695 REMARK 465 ALA A 696 REMARK 465 LYS A 697 REMARK 465 TRP A 810 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS B 6 CB TYR B 8 1.38 REMARK 500 OD2 ASP A 750 HE21 GLN A 753 1.48 REMARK 500 O ARG A 661 HG SER A 769 1.52 REMARK 500 CH2 TRP B 1 CB ASN B 4 1.55 REMARK 500 HH TYR A 468 OE1 GLU A 470 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 425 134.64 -171.61 REMARK 500 ASN A 448 69.99 -153.70 REMARK 500 ARG A 526 118.94 -162.96 REMARK 500 ASN A 579 87.19 -150.86 REMARK 500 LYS A 580 51.59 -107.95 REMARK 500 THR A 659 -74.08 -132.75 REMARK 500 PHE A 724 -0.75 65.98 REMARK 500 TYR A 754 57.04 -118.30 REMARK 500 SER B 3 63.80 36.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 968 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 969 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 970 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH B 107 DISTANCE = 5.89 ANGSTROMS DBREF 7R1V A 421 810 UNP P0A942 BAMA_ECO57 421 810 DBREF1 7R1V B 1 10 UNP A0A1C0U7H2_9GAMM DBREF2 7R1V B A0A1C0U7H2 50 59 SEQADV 7R1V HIS A 419 UNP P0A942 EXPRESSION TAG SEQADV 7R1V MET A 420 UNP P0A942 EXPRESSION TAG SEQADV 7R1V SER A 690 UNP P0A942 CYS 690 ENGINEERED MUTATION SEQADV 7R1V SER A 700 UNP P0A942 CYS 700 ENGINEERED MUTATION SEQRES 1 A 392 HIS MET ARG ASN THR GLY SER PHE ASN PHE GLY ILE GLY SEQRES 2 A 392 TYR GLY THR GLU SER GLY VAL SER PHE GLN ALA GLY VAL SEQRES 3 A 392 GLN GLN ASP ASN TRP LEU GLY THR GLY TYR ALA VAL GLY SEQRES 4 A 392 ILE ASN GLY THR LYS ASN ASP TYR GLN THR TYR ALA GLU SEQRES 5 A 392 LEU SER VAL THR ASN PRO TYR PHE THR VAL ASP GLY VAL SEQRES 6 A 392 SER LEU GLY GLY ARG LEU PHE TYR ASN ASP PHE GLN ALA SEQRES 7 A 392 ASP ASP ALA ASP LEU SER ASP TYR THR ASN LYS SER TYR SEQRES 8 A 392 GLY THR ASP VAL THR LEU GLY PHE PRO ILE ASN GLU TYR SEQRES 9 A 392 ASN SER LEU ARG ALA GLY LEU GLY TYR VAL HIS ASN SER SEQRES 10 A 392 LEU SER ASN MET GLN PRO GLN VAL ALA MET TRP ARG TYR SEQRES 11 A 392 LEU TYR SER MET GLY GLU HIS PRO SER THR SER ASP GLN SEQRES 12 A 392 ASP ASN SER PHE LYS THR ASP ASP PHE THR PHE ASN TYR SEQRES 13 A 392 GLY TRP THR TYR ASN LYS LEU ASP ARG GLY TYR PHE PRO SEQRES 14 A 392 THR ASP GLY SER ARG VAL ASN LEU THR GLY LYS VAL THR SEQRES 15 A 392 ILE PRO GLY SER ASP ASN GLU TYR TYR LYS VAL THR LEU SEQRES 16 A 392 ASP THR ALA THR TYR VAL PRO ILE ASP ASP ASP HIS LYS SEQRES 17 A 392 TRP VAL VAL LEU GLY ARG THR ARG TRP GLY TYR GLY ASP SEQRES 18 A 392 GLY LEU GLY GLY LYS GLU MET PRO PHE TYR GLU ASN PHE SEQRES 19 A 392 TYR ALA GLY GLY SER SER THR VAL ARG GLY PHE GLN SER SEQRES 20 A 392 ASN THR ILE GLY PRO LYS ALA VAL TYR PHE PRO HIS GLN SEQRES 21 A 392 ALA SER ASN TYR ASP PRO ASP TYR ASP TYR GLU SER ALA SEQRES 22 A 392 THR GLN ASP GLY ALA LYS ASP LEU SER LYS SER ASP ASP SEQRES 23 A 392 ALA VAL GLY GLY ASN ALA MET ALA VAL ALA SER LEU GLU SEQRES 24 A 392 PHE ILE THR PRO THR PRO PHE ILE SER ASP LYS TYR ALA SEQRES 25 A 392 ASN SER VAL ARG THR SER PHE PHE TRP ASP MET GLY THR SEQRES 26 A 392 VAL TRP ASP THR ASN TRP ASP SER SER GLN TYR SER GLY SEQRES 27 A 392 TYR PRO ASP TYR SER ASP PRO SER ASN ILE ARG MET SER SEQRES 28 A 392 ALA GLY ILE ALA LEU GLN TRP MET SER PRO LEU GLY PRO SEQRES 29 A 392 LEU VAL PHE SER TYR ALA GLN PRO PHE LYS LYS TYR ASP SEQRES 30 A 392 GLY ASP LYS ALA GLU GLN PHE GLN PHE ASN ILE GLY LYS SEQRES 31 A 392 THR TRP SEQRES 1 B 10 TRP ASN SER ASN VAL HIS SER TYR ARG PHE FORMUL 3 HOH *77(H2 O) HELIX 1 AA1 ASP A 497 ASP A 500 5 4 HELIX 2 AA2 GLN A 542 MET A 552 1 11 HELIX 3 AA3 PRO A 647 ASN A 651 5 5 HELIX 4 AA4 SER A 726 ALA A 730 5 5 SHEET 1 AA118 HIS B 6 PHE B 10 0 SHEET 2 AA118 GLY A 424 GLY A 433 -1 N PHE A 428 O HIS B 6 SHEET 3 AA118 PHE A 802 GLY A 807 -1 O ILE A 806 N TYR A 432 SHEET 4 AA118 GLY A 781 LYS A 792 -1 N SER A 786 O GLN A 803 SHEET 5 AA118 ARG A 767 SER A 778 -1 N LEU A 774 O PHE A 785 SHEET 6 AA118 VAL A 733 TRP A 745 -1 N SER A 736 O ALA A 773 SHEET 7 AA118 ALA A 710 THR A 720 -1 N ALA A 714 O MET A 741 SHEET 8 AA118 VAL A 628 GLY A 640 -1 N LEU A 630 O GLU A 717 SHEET 9 AA118 TYR A 608 PRO A 620 -1 N THR A 615 O THR A 633 SHEET 10 AA118 GLY A 590 THR A 600 -1 N GLY A 590 O TYR A 618 SHEET 11 AA118 SER A 564 ASN A 579 -1 N TYR A 578 O VAL A 593 SHEET 12 AA118 ASN A 523 SER A 537 -1 N LEU A 536 O PHE A 565 SHEET 13 AA118 THR A 505 ASN A 520 -1 N LEU A 515 O ALA A 527 SHEET 14 AA118 SER A 484 GLN A 495 -1 N ARG A 488 O ASP A 512 SHEET 15 AA118 GLN A 466 ASN A 475 -1 N LEU A 471 O LEU A 489 SHEET 16 AA118 ALA A 455 LYS A 462 -1 N GLY A 457 O SER A 472 SHEET 17 AA118 GLY A 437 GLN A 446 -1 N ALA A 442 O GLY A 460 SHEET 18 AA118 GLY A 424 GLY A 433 -1 N GLY A 429 O GLN A 441 SHEET 1 AA2 2 GLY A 662 PHE A 663 0 SHEET 2 AA2 2 ALA A 799 GLU A 800 -1 O GLU A 800 N GLY A 662 CRYST1 65.790 71.324 116.555 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008580 0.00000