HEADER CYTOSOLIC PROTEIN 04-FEB-22 7R27 TITLE CRYSTAL STRUCTURE OF THE L. PLANTARUM D-ALANINE LIGASE DLTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--D-ALANYL CARRIER PROTEIN LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DCL,D-ALANINE--POLY(PHOSPHORIBITOL) LIGASE SUBUNIT 1,D- COMPND 5 ALANINE-ACTIVATING ENZYME,DAE; COMPND 6 EC: 6.2.1.54; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTIPLANTIBACILLUS PLANTARUM SUBSP. PLANTARUM SOURCE 3 NC8; SOURCE 4 ORGANISM_TAXID: 1036177; SOURCE 5 GENE: DLTA, AYO51_00800; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS D-ALANINE LIGASE, D-ALANYLATION, AMP INTERMEDIATE, TEICHOIC ACIDS, KEYWDS 2 CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.NIKOLOPOULOS,S.RAVAUD,J.P.SIMORRE,C.GRANGEASSE REVDAT 3 31-JAN-24 7R27 1 REMARK REVDAT 2 10-AUG-22 7R27 1 JRNL REVDAT 1 03-AUG-22 7R27 0 JRNL AUTH N.NIKOLOPOULOS,R.C.MATOS,P.COURTIN,I.AYALA,H.AKHERRAZ, JRNL AUTH 2 J.P.SIMORRE,M.P.CHAPOT-CHARTIER,F.LEULIER,S.RAVAUD, JRNL AUTH 3 C.GRANGEASSE JRNL TITL DLTC ACTS AS AN INTERACTION HUB FOR ACPS, DLTA AND DLTB IN JRNL TITL 2 THE TEICHOIC ACID D-ALANYLATION PATHWAY OF JRNL TITL 3 LACTIPLANTIBACILLUS PLANTARUM. JRNL REF SCI REP V. 12 13133 2022 JRNL REFN ESSN 2045-2322 JRNL PMID 35907949 JRNL DOI 10.1038/S41598-022-17434-2 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 44283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3600 - 4.7300 0.98 3706 159 0.1618 0.2069 REMARK 3 2 4.7300 - 3.7500 0.98 3610 152 0.1497 0.1884 REMARK 3 3 3.7500 - 3.2800 0.98 3557 150 0.1845 0.2372 REMARK 3 4 3.2800 - 2.9800 0.95 3445 146 0.2367 0.3328 REMARK 3 5 2.9800 - 2.7700 0.94 3444 145 0.2549 0.2926 REMARK 3 6 2.7700 - 2.6000 0.93 3397 141 0.2380 0.2888 REMARK 3 7 2.6000 - 2.4700 0.91 3262 142 0.2521 0.3480 REMARK 3 8 2.4700 - 2.3600 0.89 3203 138 0.2491 0.3373 REMARK 3 9 2.3600 - 2.2700 0.88 3197 132 0.2514 0.2650 REMARK 3 10 2.2700 - 2.2000 0.86 3113 131 0.2504 0.3324 REMARK 3 11 2.2000 - 2.1300 0.83 2961 126 0.2583 0.3548 REMARK 3 12 2.1300 - 2.0700 0.80 2890 125 0.2881 0.3115 REMARK 3 13 2.0700 - 2.0100 0.74 2692 119 0.3135 0.3968 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7R27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292120807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49012 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 47.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.17130 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.45200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3DHV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, KCL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.78650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 SER A 153 REMARK 465 GLY A 154 REMARK 465 THR A 155 REMARK 465 THR A 156 REMARK 465 GLY A 157 REMARK 465 PHE A 402 REMARK 465 GLN A 403 REMARK 465 ILE A 404 REMARK 465 LYS A 405 REMARK 465 MET A 406 REMARK 465 HIS A 407 REMARK 465 GLY A 408 REMARK 465 TYR A 409 REMARK 465 ARG A 410 REMARK 465 ILE A 411 REMARK 465 GLU A 412 REMARK 465 LEU A 413 REMARK 465 GLU A 414 REMARK 465 GLU A 415 REMARK 465 VAL A 416 REMARK 465 ASP A 417 REMARK 465 HIS A 418 REMARK 465 PHE A 419 REMARK 465 LEU A 420 REMARK 465 ALA A 421 REMARK 465 GLN A 422 REMARK 465 GLN A 423 REMARK 465 GLN A 424 REMARK 465 HIS A 425 REMARK 465 ILE A 426 REMARK 465 LYS A 427 REMARK 465 GLN A 428 REMARK 465 ALA A 429 REMARK 465 VAL A 430 REMARK 465 ALA A 431 REMARK 465 VAL A 432 REMARK 465 PRO A 433 REMARK 465 LYS A 434 REMARK 465 TYR A 435 REMARK 465 ASP A 436 REMARK 465 LYS A 437 REMARK 465 GLU A 438 REMARK 465 HIS A 439 REMARK 465 LYS A 440 REMARK 465 VAL A 441 REMARK 465 THR A 442 REMARK 465 GLN A 443 REMARK 465 MET A 444 REMARK 465 ILE A 445 REMARK 465 ALA A 446 REMARK 465 TYR A 447 REMARK 465 VAL A 448 REMARK 465 VAL A 449 REMARK 465 PRO A 450 REMARK 465 LYS A 451 REMARK 465 PRO A 452 REMARK 465 ASN A 453 REMARK 465 ASP A 454 REMARK 465 PHE A 455 REMARK 465 GLU A 456 REMARK 465 SER A 457 REMARK 465 ASP A 458 REMARK 465 PHE A 459 REMARK 465 ALA A 460 REMARK 465 LEU A 461 REMARK 465 THR A 462 REMARK 465 THR A 463 REMARK 465 ALA A 464 REMARK 465 ILE A 465 REMARK 465 LYS A 466 REMARK 465 LYS A 467 REMARK 465 ASP A 468 REMARK 465 LEU A 469 REMARK 465 GLN A 470 REMARK 465 GLY A 471 REMARK 465 MET A 472 REMARK 465 MET A 473 REMARK 465 MET A 474 REMARK 465 GLU A 475 REMARK 465 TYR A 476 REMARK 465 MET A 477 REMARK 465 ILE A 478 REMARK 465 PRO A 479 REMARK 465 GLN A 480 REMARK 465 ARG A 481 REMARK 465 PHE A 482 REMARK 465 VAL A 483 REMARK 465 TYR A 484 REMARK 465 GLN A 485 REMARK 465 THR A 486 REMARK 465 SER A 487 REMARK 465 LEU A 488 REMARK 465 PRO A 489 REMARK 465 LEU A 490 REMARK 465 THR A 491 REMARK 465 PRO A 492 REMARK 465 ASN A 493 REMARK 465 GLY A 494 REMARK 465 LYS A 495 REMARK 465 ILE A 496 REMARK 465 ASP A 497 REMARK 465 VAL A 498 REMARK 465 LYS A 499 REMARK 465 SER A 500 REMARK 465 ILE A 501 REMARK 465 ILE A 502 REMARK 465 LYS A 503 REMARK 465 GLU A 504 REMARK 465 VAL A 505 REMARK 465 ASN A 506 REMARK 465 PRO A 507 REMARK 465 GLU A 508 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 ASP B 401 REMARK 465 PHE B 402 REMARK 465 GLN B 403 REMARK 465 ILE B 404 REMARK 465 LYS B 405 REMARK 465 MET B 406 REMARK 465 HIS B 407 REMARK 465 GLY B 408 REMARK 465 TYR B 409 REMARK 465 ARG B 410 REMARK 465 ILE B 411 REMARK 465 GLU B 412 REMARK 465 LEU B 413 REMARK 465 GLU B 414 REMARK 465 GLU B 415 REMARK 465 VAL B 416 REMARK 465 ASP B 417 REMARK 465 HIS B 418 REMARK 465 PHE B 419 REMARK 465 LEU B 420 REMARK 465 ALA B 421 REMARK 465 GLN B 422 REMARK 465 GLN B 423 REMARK 465 GLN B 424 REMARK 465 HIS B 425 REMARK 465 ILE B 426 REMARK 465 LYS B 427 REMARK 465 GLN B 428 REMARK 465 ALA B 429 REMARK 465 VAL B 430 REMARK 465 ALA B 431 REMARK 465 VAL B 432 REMARK 465 PRO B 433 REMARK 465 LYS B 434 REMARK 465 TYR B 435 REMARK 465 ASP B 436 REMARK 465 LYS B 437 REMARK 465 GLU B 438 REMARK 465 HIS B 439 REMARK 465 LYS B 440 REMARK 465 VAL B 441 REMARK 465 THR B 442 REMARK 465 GLN B 443 REMARK 465 MET B 444 REMARK 465 ILE B 445 REMARK 465 ALA B 446 REMARK 465 TYR B 447 REMARK 465 VAL B 448 REMARK 465 VAL B 449 REMARK 465 PRO B 450 REMARK 465 LYS B 451 REMARK 465 PRO B 452 REMARK 465 ASN B 453 REMARK 465 ASP B 454 REMARK 465 PHE B 455 REMARK 465 GLU B 456 REMARK 465 SER B 457 REMARK 465 ASP B 458 REMARK 465 PHE B 459 REMARK 465 ALA B 460 REMARK 465 LEU B 461 REMARK 465 THR B 462 REMARK 465 THR B 463 REMARK 465 ALA B 464 REMARK 465 ILE B 465 REMARK 465 LYS B 466 REMARK 465 LYS B 467 REMARK 465 ASP B 468 REMARK 465 LEU B 469 REMARK 465 GLN B 470 REMARK 465 GLY B 471 REMARK 465 MET B 472 REMARK 465 MET B 473 REMARK 465 MET B 474 REMARK 465 GLU B 475 REMARK 465 TYR B 476 REMARK 465 MET B 477 REMARK 465 ILE B 478 REMARK 465 PRO B 479 REMARK 465 GLN B 480 REMARK 465 ARG B 481 REMARK 465 PHE B 482 REMARK 465 VAL B 483 REMARK 465 TYR B 484 REMARK 465 GLN B 485 REMARK 465 THR B 486 REMARK 465 SER B 487 REMARK 465 LEU B 488 REMARK 465 PRO B 489 REMARK 465 LEU B 490 REMARK 465 THR B 491 REMARK 465 PRO B 492 REMARK 465 ASN B 493 REMARK 465 GLY B 494 REMARK 465 LYS B 495 REMARK 465 ILE B 496 REMARK 465 ASP B 497 REMARK 465 VAL B 498 REMARK 465 LYS B 499 REMARK 465 SER B 500 REMARK 465 ILE B 501 REMARK 465 ILE B 502 REMARK 465 LYS B 503 REMARK 465 GLU B 504 REMARK 465 VAL B 505 REMARK 465 ASN B 506 REMARK 465 PRO B 507 REMARK 465 GLU B 508 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 401 CG OD1 OD2 REMARK 470 LYS B 3 N CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1057 O HOH B 1064 2.17 REMARK 500 O HOH B 1035 O HOH B 1055 2.17 REMARK 500 O3P AMP B 702 O HOH B 801 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 51 27.06 -45.76 REMARK 500 ALA A 52 -139.25 68.80 REMARK 500 LYS A 53 -45.52 -19.43 REMARK 500 ASP A 54 126.92 -39.07 REMARK 500 CYS A 301 80.72 76.04 REMARK 500 VAL A 302 -72.42 77.55 REMARK 500 ASP A 318 -80.95 -78.68 REMARK 500 GLN B 25 60.94 37.86 REMARK 500 ASP B 49 65.55 66.90 REMARK 500 LYS B 53 -17.43 72.46 REMARK 500 LYS B 100 65.83 36.53 REMARK 500 HIS B 139 37.97 -141.03 REMARK 500 THR B 156 -155.44 -75.68 REMARK 500 GLN B 186 62.81 35.78 REMARK 500 PRO B 236 47.44 -87.59 REMARK 500 CYS B 301 92.33 69.87 REMARK 500 VAL B 302 -62.08 72.77 REMARK 500 ASP B 318 -76.55 -91.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1026 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1027 DISTANCE = 9.55 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DAL A 701 REMARK 610 DAL B 701 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 AMP A 702 DBREF1 7R27 A 1 508 UNP A0A151G8K4_LACPN DBREF2 7R27 A A0A151G8K4 1 508 DBREF1 7R27 B 1 508 UNP A0A151G8K4_LACPN DBREF2 7R27 B A0A151G8K4 1 508 SEQRES 1 A 508 MET ILE LYS ASN ILE ILE THR THR ILE ASP ASP TYR ALA SEQRES 2 A 508 ARG THR GLN PRO ASN ASN VAL VAL TYR ASP VAL GLN GLY SEQRES 3 A 508 VAL THR HIS THR TYR ALA GLU LEU LYS ALA TYR SER ASP SEQRES 4 A 508 ALA LEU ALA ALA HIS LEU ASP THR LEU ASP LEU PRO ALA SEQRES 5 A 508 LYS ASP PRO ILE ILE VAL PHE GLY GLY GLN THR PHE GLU SEQRES 6 A 508 MET ILE ALA THR PHE LEU GLY VAL VAL LYS SER GLY ARG SEQRES 7 A 508 ALA TYR ILE PRO ILE ASP THR HIS SER PRO ASN GLU ARG SEQRES 8 A 508 LEU THR MET ILE ASN GLU ILE ALA LYS PRO ALA ALA VAL SEQRES 9 A 508 ILE ALA VAL ALA ASP LEU PRO THR GLY VAL GLY THR THR SEQRES 10 A 508 PRO VAL ILE THR PRO ASP GLN LEU ALA ALA ILE PHE ALA SEQRES 11 A 508 THR PRO VAL ASP TYR GLN ALA ASP HIS VAL VAL SER GLY SEQRES 12 A 508 ASP ASP ASN TYR TYR ILE ILE PHE THR SER GLY THR THR SEQRES 13 A 508 GLY MET PRO LYS GLY VAL GLN ILE SER HIS ASP ASN LEU SEQRES 14 A 508 VAL SER TYR VAL ASP TRP MET LEU SER ASP ASP PHE GLY SEQRES 15 A 508 LEU PRO ASP GLN PRO ASN SER LEU SER GLN PRO PRO TYR SEQRES 16 A 508 SER PHE ASP LEU SER VAL MET ASP VAL TYR PRO THR LEU SEQRES 17 A 508 ALA LEU GLY GLY THR LEU TYR ALA LEU PRO LYS ALA VAL SEQRES 18 A 508 THR ASP ASP PHE LYS GLN LEU PHE ALA ALA LEU PRO THR SEQRES 19 A 508 LEU PRO ILE ASN VAL TRP VAL SER THR PRO SER PHE MET SEQRES 20 A 508 ASP ILE CYS LEU LEU GLU PRO LYS PHE ASN ALA GLU ASN SEQRES 21 A 508 LEU PRO THR LEU THR HIS PHE LEU PHE CYS GLY GLU GLU SEQRES 22 A 508 LEU THR HIS LYS THR ALA ALA THR LEU LYS LYS ARG PHE SEQRES 23 A 508 PRO ASP ALA ARG ILE PHE ASN THR TYR GLY PRO THR GLU SEQRES 24 A 508 THR CYS VAL ALA VAL THR GLN ILE GLU ILE THR ASP ALA SEQRES 25 A 508 ALA LEU ALA GLN TYR ASP ARG LEU PRO ILE GLY TYR ALA SEQRES 26 A 508 LYS ALA ASP THR ARG ILE LEU VAL VAL ASP GLU ASN GLY SEQRES 27 A 508 GLU ALA VAL PRO ASN GLY THR GLU GLY GLU LEU ILE ILE SEQRES 28 A 508 ALA GLY PRO SER VAL SER LYS GLY TYR LEU ASN ASN PRO SEQRES 29 A 508 GLU LYS THR ALA LYS ALA PHE PHE GLU LEU ASP GLY GLN SEQRES 30 A 508 PRO ALA TYR HIS SER GLY ASP ILE GLY THR MET ASP ALA SEQRES 31 A 508 ASP GLY LEU PHE ARG TYR ARG GLY ARG VAL ASP PHE GLN SEQRES 32 A 508 ILE LYS MET HIS GLY TYR ARG ILE GLU LEU GLU GLU VAL SEQRES 33 A 508 ASP HIS PHE LEU ALA GLN GLN GLN HIS ILE LYS GLN ALA SEQRES 34 A 508 VAL ALA VAL PRO LYS TYR ASP LYS GLU HIS LYS VAL THR SEQRES 35 A 508 GLN MET ILE ALA TYR VAL VAL PRO LYS PRO ASN ASP PHE SEQRES 36 A 508 GLU SER ASP PHE ALA LEU THR THR ALA ILE LYS LYS ASP SEQRES 37 A 508 LEU GLN GLY MET MET MET GLU TYR MET ILE PRO GLN ARG SEQRES 38 A 508 PHE VAL TYR GLN THR SER LEU PRO LEU THR PRO ASN GLY SEQRES 39 A 508 LYS ILE ASP VAL LYS SER ILE ILE LYS GLU VAL ASN PRO SEQRES 40 A 508 GLU SEQRES 1 B 508 MET ILE LYS ASN ILE ILE THR THR ILE ASP ASP TYR ALA SEQRES 2 B 508 ARG THR GLN PRO ASN ASN VAL VAL TYR ASP VAL GLN GLY SEQRES 3 B 508 VAL THR HIS THR TYR ALA GLU LEU LYS ALA TYR SER ASP SEQRES 4 B 508 ALA LEU ALA ALA HIS LEU ASP THR LEU ASP LEU PRO ALA SEQRES 5 B 508 LYS ASP PRO ILE ILE VAL PHE GLY GLY GLN THR PHE GLU SEQRES 6 B 508 MET ILE ALA THR PHE LEU GLY VAL VAL LYS SER GLY ARG SEQRES 7 B 508 ALA TYR ILE PRO ILE ASP THR HIS SER PRO ASN GLU ARG SEQRES 8 B 508 LEU THR MET ILE ASN GLU ILE ALA LYS PRO ALA ALA VAL SEQRES 9 B 508 ILE ALA VAL ALA ASP LEU PRO THR GLY VAL GLY THR THR SEQRES 10 B 508 PRO VAL ILE THR PRO ASP GLN LEU ALA ALA ILE PHE ALA SEQRES 11 B 508 THR PRO VAL ASP TYR GLN ALA ASP HIS VAL VAL SER GLY SEQRES 12 B 508 ASP ASP ASN TYR TYR ILE ILE PHE THR SER GLY THR THR SEQRES 13 B 508 GLY MET PRO LYS GLY VAL GLN ILE SER HIS ASP ASN LEU SEQRES 14 B 508 VAL SER TYR VAL ASP TRP MET LEU SER ASP ASP PHE GLY SEQRES 15 B 508 LEU PRO ASP GLN PRO ASN SER LEU SER GLN PRO PRO TYR SEQRES 16 B 508 SER PHE ASP LEU SER VAL MET ASP VAL TYR PRO THR LEU SEQRES 17 B 508 ALA LEU GLY GLY THR LEU TYR ALA LEU PRO LYS ALA VAL SEQRES 18 B 508 THR ASP ASP PHE LYS GLN LEU PHE ALA ALA LEU PRO THR SEQRES 19 B 508 LEU PRO ILE ASN VAL TRP VAL SER THR PRO SER PHE MET SEQRES 20 B 508 ASP ILE CYS LEU LEU GLU PRO LYS PHE ASN ALA GLU ASN SEQRES 21 B 508 LEU PRO THR LEU THR HIS PHE LEU PHE CYS GLY GLU GLU SEQRES 22 B 508 LEU THR HIS LYS THR ALA ALA THR LEU LYS LYS ARG PHE SEQRES 23 B 508 PRO ASP ALA ARG ILE PHE ASN THR TYR GLY PRO THR GLU SEQRES 24 B 508 THR CYS VAL ALA VAL THR GLN ILE GLU ILE THR ASP ALA SEQRES 25 B 508 ALA LEU ALA GLN TYR ASP ARG LEU PRO ILE GLY TYR ALA SEQRES 26 B 508 LYS ALA ASP THR ARG ILE LEU VAL VAL ASP GLU ASN GLY SEQRES 27 B 508 GLU ALA VAL PRO ASN GLY THR GLU GLY GLU LEU ILE ILE SEQRES 28 B 508 ALA GLY PRO SER VAL SER LYS GLY TYR LEU ASN ASN PRO SEQRES 29 B 508 GLU LYS THR ALA LYS ALA PHE PHE GLU LEU ASP GLY GLN SEQRES 30 B 508 PRO ALA TYR HIS SER GLY ASP ILE GLY THR MET ASP ALA SEQRES 31 B 508 ASP GLY LEU PHE ARG TYR ARG GLY ARG VAL ASP PHE GLN SEQRES 32 B 508 ILE LYS MET HIS GLY TYR ARG ILE GLU LEU GLU GLU VAL SEQRES 33 B 508 ASP HIS PHE LEU ALA GLN GLN GLN HIS ILE LYS GLN ALA SEQRES 34 B 508 VAL ALA VAL PRO LYS TYR ASP LYS GLU HIS LYS VAL THR SEQRES 35 B 508 GLN MET ILE ALA TYR VAL VAL PRO LYS PRO ASN ASP PHE SEQRES 36 B 508 GLU SER ASP PHE ALA LEU THR THR ALA ILE LYS LYS ASP SEQRES 37 B 508 LEU GLN GLY MET MET MET GLU TYR MET ILE PRO GLN ARG SEQRES 38 B 508 PHE VAL TYR GLN THR SER LEU PRO LEU THR PRO ASN GLY SEQRES 39 B 508 LYS ILE ASP VAL LYS SER ILE ILE LYS GLU VAL ASN PRO SEQRES 40 B 508 GLU HET DAL A 701 5 HET AMP A 702 23 HET DAL B 701 5 HET AMP B 702 23 HETNAM DAL D-ALANINE HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 DAL 2(C3 H7 N O2) FORMUL 4 AMP 2(C10 H14 N5 O7 P) FORMUL 7 HOH *510(H2 O) HELIX 1 AA1 ASN A 4 GLN A 16 1 13 HELIX 2 AA2 TYR A 31 LEU A 48 1 18 HELIX 3 AA3 THR A 63 SER A 76 1 14 HELIX 4 AA4 PRO A 88 LYS A 100 1 13 HELIX 5 AA5 THR A 121 ALA A 130 1 10 HELIX 6 AA6 HIS A 166 LEU A 177 1 12 HELIX 7 AA7 ASP A 198 LEU A 210 1 13 HELIX 8 AA8 PRO A 218 ASP A 223 1 6 HELIX 9 AA9 ASP A 224 LEU A 232 1 9 HELIX 10 AB1 PRO A 233 LEU A 235 5 3 HELIX 11 AB2 THR A 243 LEU A 251 1 9 HELIX 12 AB3 THR A 275 PHE A 286 1 12 HELIX 13 AB4 PRO A 297 CYS A 301 5 5 HELIX 14 AB5 THR A 310 TYR A 317 1 8 HELIX 15 AB6 ASN A 363 ALA A 370 1 8 HELIX 16 AB7 ASN B 4 GLN B 16 1 13 HELIX 17 AB8 TYR B 31 LEU B 48 1 18 HELIX 18 AB9 THR B 63 SER B 76 1 14 HELIX 19 AC1 PRO B 88 LYS B 100 1 13 HELIX 20 AC2 THR B 121 THR B 131 1 11 HELIX 21 AC3 HIS B 166 LEU B 177 1 12 HELIX 22 AC4 ASP B 198 LEU B 210 1 13 HELIX 23 AC5 PRO B 218 ASP B 223 1 6 HELIX 24 AC6 ASP B 224 LEU B 232 1 9 HELIX 25 AC7 PRO B 233 LEU B 235 5 3 HELIX 26 AC8 THR B 243 LEU B 251 1 9 HELIX 27 AC9 THR B 275 PHE B 286 1 12 HELIX 28 AD1 PRO B 297 CYS B 301 5 5 HELIX 29 AD2 THR B 310 TYR B 317 1 8 HELIX 30 AD3 ASN B 363 ALA B 370 1 8 SHEET 1 AA1 4 VAL A 27 THR A 30 0 SHEET 2 AA1 4 VAL A 20 VAL A 24 -1 N VAL A 21 O HIS A 29 SHEET 3 AA1 4 THR A 213 ALA A 216 1 O LEU A 214 N VAL A 21 SHEET 4 AA1 4 ASN A 188 SER A 191 1 N SER A 189 O TYR A 215 SHEET 1 AA2 4 TYR A 80 ASP A 84 0 SHEET 2 AA2 4 ILE A 56 GLY A 60 1 N VAL A 58 O ILE A 81 SHEET 3 AA2 4 ALA A 103 ALA A 106 1 O ILE A 105 N ILE A 57 SHEET 4 AA2 4 VAL A 119 ILE A 120 1 O ILE A 120 N ALA A 106 SHEET 1 AA3 2 ASN A 146 PHE A 151 0 SHEET 2 AA3 2 GLY A 161 SER A 165 -1 O ILE A 164 N TYR A 147 SHEET 1 AA4 9 VAL A 239 SER A 242 0 SHEET 2 AA4 9 HIS A 266 PHE A 269 1 O LEU A 268 N TRP A 240 SHEET 3 AA4 9 ARG A 290 TYR A 295 1 O ARG A 290 N PHE A 267 SHEET 4 AA4 9 THR A 305 GLU A 308 -1 O ILE A 307 N ASN A 293 SHEET 5 AA4 9 GLY A 323 ALA A 325 -1 O TYR A 324 N GLN A 306 SHEET 6 AA4 9 LEU A 393 ARG A 399 -1 O PHE A 394 N GLY A 323 SHEET 7 AA4 9 GLN A 377 MET A 388 -1 N ILE A 385 O ARG A 397 SHEET 8 AA4 9 GLY A 347 ALA A 352 -1 N ILE A 351 O TYR A 380 SHEET 9 AA4 9 ARG A 330 VAL A 334 -1 N LEU A 332 O ILE A 350 SHEET 1 AA5 8 VAL A 239 SER A 242 0 SHEET 2 AA5 8 HIS A 266 PHE A 269 1 O LEU A 268 N TRP A 240 SHEET 3 AA5 8 ARG A 290 TYR A 295 1 O ARG A 290 N PHE A 267 SHEET 4 AA5 8 THR A 305 GLU A 308 -1 O ILE A 307 N ASN A 293 SHEET 5 AA5 8 GLY A 323 ALA A 325 -1 O TYR A 324 N GLN A 306 SHEET 6 AA5 8 LEU A 393 ARG A 399 -1 O PHE A 394 N GLY A 323 SHEET 7 AA5 8 GLN A 377 MET A 388 -1 N ILE A 385 O ARG A 397 SHEET 8 AA5 8 PHE A 371 LEU A 374 -1 N PHE A 372 O ALA A 379 SHEET 1 AA6 4 VAL B 27 THR B 30 0 SHEET 2 AA6 4 VAL B 20 VAL B 24 -1 N VAL B 21 O HIS B 29 SHEET 3 AA6 4 THR B 213 ALA B 216 1 O ALA B 216 N ASP B 23 SHEET 4 AA6 4 ASN B 188 LEU B 190 1 N SER B 189 O THR B 213 SHEET 1 AA7 4 TYR B 80 ASP B 84 0 SHEET 2 AA7 4 ILE B 56 GLY B 60 1 N VAL B 58 O ILE B 81 SHEET 3 AA7 4 ALA B 103 ALA B 106 1 O ILE B 105 N ILE B 57 SHEET 4 AA7 4 VAL B 119 ILE B 120 1 O ILE B 120 N ALA B 106 SHEET 1 AA8 3 ASN B 146 PHE B 151 0 SHEET 2 AA8 3 GLY B 161 SER B 165 -1 O ILE B 164 N TYR B 147 SHEET 3 AA8 3 GLY B 359 TYR B 360 -1 O GLY B 359 N GLN B 163 SHEET 1 AA9 5 VAL B 239 SER B 242 0 SHEET 2 AA9 5 HIS B 266 PHE B 269 1 O LEU B 268 N TRP B 240 SHEET 3 AA9 5 ARG B 290 TYR B 295 1 O PHE B 292 N PHE B 267 SHEET 4 AA9 5 THR B 305 GLU B 308 -1 O ILE B 307 N ASN B 293 SHEET 5 AA9 5 TYR B 324 ALA B 325 -1 O TYR B 324 N GLN B 306 SHEET 1 AB1 4 ARG B 330 VAL B 334 0 SHEET 2 AB1 4 GLY B 347 ALA B 352 -1 O ILE B 350 N LEU B 332 SHEET 3 AB1 4 GLN B 377 MET B 388 -1 O GLY B 386 N GLY B 347 SHEET 4 AB1 4 PHE B 371 LEU B 374 -1 N LEU B 374 O GLN B 377 SHEET 1 AB2 4 ARG B 330 VAL B 334 0 SHEET 2 AB2 4 GLY B 347 ALA B 352 -1 O ILE B 350 N LEU B 332 SHEET 3 AB2 4 GLN B 377 MET B 388 -1 O GLY B 386 N GLY B 347 SHEET 4 AB2 4 PHE B 394 ARG B 399 -1 O GLY B 398 N ILE B 385 LINK N DAL B 701 O2P AMP B 702 1555 1555 1.30 CRYST1 68.522 53.573 102.072 90.00 96.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014594 0.000000 0.001735 0.00000 SCALE2 0.000000 0.018666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009866 0.00000