HEADER HYDROLASE 04-FEB-22 7R2G TITLE USP15 D1D2 IN CATALYTICALLY-COMPETENT STATE BOUND TO MITOXANTRONE TITLE 2 STACK (ISOFORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.19.12; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: AA 255 TO 919 INTERNAL DELETION OF RESIDUES 440 TO 756 COMPND 8 CONSTRUCT HAS C TERMINAL 6X HIS TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: USP15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: T1 RESISTANT; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS CYSTEINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.PRIYANKA,T.K.SIXMA REVDAT 3 31-JAN-24 7R2G 1 REMARK REVDAT 2 15-JUN-22 7R2G 1 JRNL REVDAT 1 08-JUN-22 7R2G 0 JRNL AUTH A.PRIYANKA,D.TISI,T.K.SIXMA JRNL TITL MITOXANTRONE STACKING DOES NOT DEFINE THE ACTIVE OR INACTIVE JRNL TITL 2 STATE OF USP15 CATALYTIC DOMAIN. JRNL REF J.STRUCT.BIOL. V. 214 07862 2022 JRNL REFN ESSN 1095-8657 JRNL PMID 35605756 JRNL DOI 10.1016/J.JSB.2022.107862 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 49498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2444 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3448 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 392 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.90000 REMARK 3 B22 (A**2) : 9.84000 REMARK 3 B33 (A**2) : -4.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.238 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6169 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5598 ; 0.004 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8345 ; 1.510 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12959 ; 1.340 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 690 ; 6.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;33.217 ;23.627 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 975 ;11.994 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;19.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 718 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6925 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1405 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 255 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1790 -17.0840 7.6870 REMARK 3 T TENSOR REMARK 3 T11: 0.4244 T22: 0.0325 REMARK 3 T33: 0.4611 T12: 0.0085 REMARK 3 T13: -0.0201 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.4877 L22: 0.5143 REMARK 3 L33: 1.6008 L12: -0.3608 REMARK 3 L13: -0.0557 L23: 0.2009 REMARK 3 S TENSOR REMARK 3 S11: 0.0313 S12: 0.1890 S13: 0.0143 REMARK 3 S21: -0.0294 S22: -0.1057 S23: -0.0104 REMARK 3 S31: -0.0941 S32: -0.0275 S33: 0.0745 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 255 B 1001 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5090 -30.7200 -20.6390 REMARK 3 T TENSOR REMARK 3 T11: 0.4337 T22: 0.0462 REMARK 3 T33: 0.4747 T12: 0.0027 REMARK 3 T13: -0.0236 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.6371 L22: 0.3987 REMARK 3 L33: 1.5984 L12: 0.1850 REMARK 3 L13: -0.0775 L23: 0.0397 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.2184 S13: -0.0436 REMARK 3 S21: -0.0089 S22: -0.0927 S23: -0.0128 REMARK 3 S31: 0.1041 S32: 0.0877 S33: 0.1289 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1101 A 1152 REMARK 3 RESIDUE RANGE : B 1101 B 1180 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0390 -23.6100 -14.1790 REMARK 3 T TENSOR REMARK 3 T11: 0.4658 T22: 0.0107 REMARK 3 T33: 0.5100 T12: 0.0185 REMARK 3 T13: -0.0024 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.6019 L22: 0.1430 REMARK 3 L33: 1.3270 L12: 0.2278 REMARK 3 L13: 0.8270 L23: 0.3082 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: -0.0178 S13: 0.0850 REMARK 3 S21: -0.0257 S22: -0.0223 S23: 0.0152 REMARK 3 S31: -0.0417 S32: -0.0541 S33: 0.0605 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1003 B 1014 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2970 -56.0890 -53.4230 REMARK 3 T TENSOR REMARK 3 T11: 1.0252 T22: 0.5173 REMARK 3 T33: 0.5298 T12: -0.0201 REMARK 3 T13: 0.2256 T23: -0.2843 REMARK 3 L TENSOR REMARK 3 L11: 1.1888 L22: 0.5298 REMARK 3 L33: 0.7204 L12: 0.1913 REMARK 3 L13: 0.8148 L23: -0.0800 REMARK 3 S TENSOR REMARK 3 S11: -0.2319 S12: 0.4218 S13: 0.2145 REMARK 3 S21: 0.0064 S22: -0.0077 S23: 0.1535 REMARK 3 S31: 0.0279 S32: 0.2718 S33: 0.2397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7R2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292120798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8-7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : X-RAY REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION MAR 15, 2019 REMARK 200 BUILT=20190606 REMARK 200 DATA SCALING SOFTWARE : XDS VERSION MAR 15, 2019 REMARK 200 BUILT=20190606 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51964 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 97.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6GHA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM HEPES 0.1M, PH 7.0, PEG8000 REMARK 280 5%., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.69950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 254 REMARK 465 SER A 345 REMARK 465 GLY A 346 REMARK 465 TYR A 347 REMARK 465 GLN A 348 REMARK 465 SER A 753 REMARK 465 THR A 754 REMARK 465 TYR A 811 REMARK 465 SER A 812 REMARK 465 ARG A 813 REMARK 465 TYR A 814 REMARK 465 MET A 815 REMARK 465 ARG A 816 REMARK 465 HIS A 925 REMARK 465 HIS A 926 REMARK 465 HIS A 927 REMARK 465 MET B 254 REMARK 465 SER B 753 REMARK 465 THR B 754 REMARK 465 TYR B 811 REMARK 465 SER B 812 REMARK 465 ARG B 813 REMARK 465 TYR B 814 REMARK 465 MET B 815 REMARK 465 HIS B 925 REMARK 465 HIS B 926 REMARK 465 HIS B 927 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 343 OAE MIX B 1014 2654 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 295 CD GLU A 295 OE1 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 377 95.54 -64.14 REMARK 500 CYS A 422 -9.86 93.16 REMARK 500 ASP A 776 74.48 59.90 REMARK 500 GLN A 788 59.34 -92.65 REMARK 500 CYS A 844 55.77 -140.59 REMARK 500 ASP A 880 -115.64 48.30 REMARK 500 TYR A 897 -54.18 -123.71 REMARK 500 GLN B 377 93.87 -68.19 REMARK 500 GLU B 421 -68.50 -104.39 REMARK 500 ASP B 776 87.09 -163.42 REMARK 500 GLN B 788 57.11 -94.13 REMARK 500 CYS B 844 53.03 -140.95 REMARK 500 ASP B 880 -115.13 44.43 REMARK 500 TYR B 897 -50.59 -124.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 419 SG REMARK 620 2 GLU A 421 O 58.4 REMARK 620 3 CYS A 422 SG 111.1 67.3 REMARK 620 4 CYS A 780 SG 109.6 158.7 106.0 REMARK 620 5 CYS A 783 SG 112.0 86.6 103.2 114.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 419 SG REMARK 620 2 CYS B 422 SG 116.8 REMARK 620 3 CYS B 780 SG 108.9 106.6 REMARK 620 4 CYS B 783 SG 103.6 108.6 112.5 REMARK 620 N 1 2 3 DBREF 7R2G A 254 927 PDB 7R2G 7R2G 254 927 DBREF 7R2G B 254 927 PDB 7R2G 7R2G 254 927 SEQRES 1 A 362 MET GLU GLN PRO GLY LEU CYS GLY LEU SER ASN LEU GLY SEQRES 2 A 362 ASN THR CYS PHE MET ASN SER ALA ILE GLN CYS LEU SER SEQRES 3 A 362 ASN THR PRO PRO LEU THR GLU TYR PHE LEU ASN ASP LYS SEQRES 4 A 362 TYR GLN GLU GLU LEU ASN PHE ASP ASN PRO LEU GLY MET SEQRES 5 A 362 ARG GLY GLU ILE ALA LYS SER TYR ALA GLU LEU ILE LYS SEQRES 6 A 362 GLN MET TRP SER GLY LYS PHE SER TYR VAL THR PRO ARG SEQRES 7 A 362 ALA PHE LYS THR GLN VAL GLY ARG PHE ALA PRO GLN PHE SEQRES 8 A 362 SER GLY TYR GLN GLN GLN ASP CYS GLN GLU LEU LEU ALA SEQRES 9 A 362 PHE LEU LEU ASP GLY LEU HIS GLU ASP LEU ASN ARG ILE SEQRES 10 A 362 ARG LYS LYS PRO TYR ILE GLN LEU LYS ASP ALA ASP GLY SEQRES 11 A 362 ARG PRO ASP LYS VAL VAL ALA GLU GLU ALA TRP GLU ASN SEQRES 12 A 362 HIS LEU LYS ARG ASN ASP SER ILE ILE VAL ASP ILE PHE SEQRES 13 A 362 HIS GLY LEU PHE LYS SER THR LEU VAL CYS PRO GLU CYS SEQRES 14 A 362 ALA LYS ILE SER VAL THR PHE ASP PRO PHE CYS TYR LEU SEQRES 15 A 362 THR LEU PRO LEU ALA SER THR SER LYS VAL LYS LEU LYS SEQRES 16 A 362 ASP CYS ILE GLU LEU PHE THR THR LYS GLU LYS LEU GLY SEQRES 17 A 362 ALA GLU ASP PRO TRP TYR CYS PRO ASN CYS LYS GLU HIS SEQRES 18 A 362 GLN GLN ALA THR LYS LYS LEU ASP LEU TRP SER LEU PRO SEQRES 19 A 362 PRO VAL LEU VAL VAL HIS LEU LYS ARG PHE SER TYR SER SEQRES 20 A 362 ARG TYR MET ARG ASP LYS LEU ASP THR LEU VAL ASP PHE SEQRES 21 A 362 PRO ILE ASN ASP LEU ASP MET SER GLU PHE LEU ILE ASN SEQRES 22 A 362 PRO ASN ALA GLY PRO CYS ARG TYR ASN LEU ILE ALA VAL SEQRES 23 A 362 SER ASN HIS TYR GLY GLY MET GLY GLY GLY HIS TYR THR SEQRES 24 A 362 ALA PHE ALA LYS ASN LYS ASP ASP GLY LYS TRP TYR TYR SEQRES 25 A 362 PHE ASP ASP SER SER VAL SER THR ALA SER GLU ASP GLN SEQRES 26 A 362 ILE VAL SER LYS ALA ALA TYR VAL LEU PHE TYR GLN ARG SEQRES 27 A 362 GLN ASP THR PHE SER GLY THR GLY PHE PHE PRO LEU ASP SEQRES 28 A 362 ARG GLU THR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 362 MET GLU GLN PRO GLY LEU CYS GLY LEU SER ASN LEU GLY SEQRES 2 B 362 ASN THR CYS PHE MET ASN SER ALA ILE GLN CYS LEU SER SEQRES 3 B 362 ASN THR PRO PRO LEU THR GLU TYR PHE LEU ASN ASP LYS SEQRES 4 B 362 TYR GLN GLU GLU LEU ASN PHE ASP ASN PRO LEU GLY MET SEQRES 5 B 362 ARG GLY GLU ILE ALA LYS SER TYR ALA GLU LEU ILE LYS SEQRES 6 B 362 GLN MET TRP SER GLY LYS PHE SER TYR VAL THR PRO ARG SEQRES 7 B 362 ALA PHE LYS THR GLN VAL GLY ARG PHE ALA PRO GLN PHE SEQRES 8 B 362 SER GLY TYR GLN GLN GLN ASP CYS GLN GLU LEU LEU ALA SEQRES 9 B 362 PHE LEU LEU ASP GLY LEU HIS GLU ASP LEU ASN ARG ILE SEQRES 10 B 362 ARG LYS LYS PRO TYR ILE GLN LEU LYS ASP ALA ASP GLY SEQRES 11 B 362 ARG PRO ASP LYS VAL VAL ALA GLU GLU ALA TRP GLU ASN SEQRES 12 B 362 HIS LEU LYS ARG ASN ASP SER ILE ILE VAL ASP ILE PHE SEQRES 13 B 362 HIS GLY LEU PHE LYS SER THR LEU VAL CYS PRO GLU CYS SEQRES 14 B 362 ALA LYS ILE SER VAL THR PHE ASP PRO PHE CYS TYR LEU SEQRES 15 B 362 THR LEU PRO LEU ALA SER THR SER LYS VAL LYS LEU LYS SEQRES 16 B 362 ASP CYS ILE GLU LEU PHE THR THR LYS GLU LYS LEU GLY SEQRES 17 B 362 ALA GLU ASP PRO TRP TYR CYS PRO ASN CYS LYS GLU HIS SEQRES 18 B 362 GLN GLN ALA THR LYS LYS LEU ASP LEU TRP SER LEU PRO SEQRES 19 B 362 PRO VAL LEU VAL VAL HIS LEU LYS ARG PHE SER TYR SER SEQRES 20 B 362 ARG TYR MET ARG ASP LYS LEU ASP THR LEU VAL ASP PHE SEQRES 21 B 362 PRO ILE ASN ASP LEU ASP MET SER GLU PHE LEU ILE ASN SEQRES 22 B 362 PRO ASN ALA GLY PRO CYS ARG TYR ASN LEU ILE ALA VAL SEQRES 23 B 362 SER ASN HIS TYR GLY GLY MET GLY GLY GLY HIS TYR THR SEQRES 24 B 362 ALA PHE ALA LYS ASN LYS ASP ASP GLY LYS TRP TYR TYR SEQRES 25 B 362 PHE ASP ASP SER SER VAL SER THR ALA SER GLU ASP GLN SEQRES 26 B 362 ILE VAL SER LYS ALA ALA TYR VAL LEU PHE TYR GLN ARG SEQRES 27 B 362 GLN ASP THR PHE SER GLY THR GLY PHE PHE PRO LEU ASP SEQRES 28 B 362 ARG GLU THR LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A1001 1 HET ZN B1001 1 HET GOL B1002 6 HET MIX B1003 32 HET MIX B1004 32 HET MIX B1005 32 HET MIX B1006 32 HET MIX B1007 32 HET MIX B1008 32 HET MIX B1009 32 HET MIX B1010 32 HET MIX B1011 32 HET MIX B1012 32 HET MIX B1013 32 HET MIX B1014 32 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM MIX 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL) HETNAM 2 MIX AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN MIX MITOXANTRONE; 1,4-DIHYDROXY-5,8-BIS({2-[(2- HETSYN 2 MIX HYDROXYETHYL)AMINO]ETHYL}AMINO)ANTHRA-9,10-QUINONE FORMUL 3 ZN 2(ZN 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 MIX 12(C22 H28 N4 O6) FORMUL 18 HOH *132(H2 O) HELIX 1 AA1 THR A 268 ASN A 280 1 13 HELIX 2 AA2 THR A 281 ASN A 290 1 10 HELIX 3 AA3 TYR A 293 LEU A 297 5 5 HELIX 4 AA4 GLY A 307 TRP A 321 1 15 HELIX 5 AA5 PRO A 330 ALA A 341 1 12 HELIX 6 AA6 ASP A 351 LEU A 367 1 17 HELIX 7 AA7 PRO A 385 ASN A 401 1 17 HELIX 8 AA8 SER A 403 HIS A 410 1 8 HELIX 9 AA9 LEU A 759 THR A 767 1 9 HELIX 10 AB1 SER A 833 LEU A 836 5 4 HELIX 11 AB2 SER A 887 ILE A 891 5 5 HELIX 12 AB3 ASP A 905 PHE A 907 5 3 HELIX 13 AB4 PHE A 913 HIS A 924 1 12 HELIX 14 AB5 THR B 268 ASN B 280 1 13 HELIX 15 AB6 THR B 281 ASN B 290 1 10 HELIX 16 AB7 TYR B 293 LEU B 297 5 5 HELIX 17 AB8 GLY B 307 TRP B 321 1 15 HELIX 18 AB9 PRO B 330 ALA B 341 1 12 HELIX 19 AC1 PRO B 342 SER B 345 5 4 HELIX 20 AC2 ASP B 351 LEU B 367 1 17 HELIX 21 AC3 PRO B 385 ASN B 401 1 17 HELIX 22 AC4 SER B 403 HIS B 410 1 8 HELIX 23 AC5 LEU B 759 THR B 767 1 9 HELIX 24 AC6 SER B 887 ILE B 891 5 5 HELIX 25 AC7 ASP B 905 PHE B 907 5 3 HELIX 26 AC8 PHE B 913 HIS B 924 1 12 SHEET 1 AA1 2 GLY A 261 LEU A 262 0 SHEET 2 AA1 2 TYR A 327 VAL A 328 1 O VAL A 328 N GLY A 261 SHEET 1 AA2 4 ILE A 425 PHE A 432 0 SHEET 2 AA2 4 GLY A 411 VAL A 418 -1 N LEU A 417 O SER A 426 SHEET 3 AA2 4 THR A 790 SER A 797 -1 O ASP A 794 N LYS A 414 SHEET 4 AA2 4 GLU A 770 LYS A 771 -1 N GLU A 770 O LYS A 791 SHEET 1 AA3 5 LEU A 435 PRO A 438 0 SHEET 2 AA3 5 VAL A 801 LYS A 807 1 O HIS A 805 N LEU A 437 SHEET 3 AA3 5 ALA A 896 ARG A 903 -1 O LEU A 899 N VAL A 804 SHEET 4 AA3 5 ARG A 845 TYR A 855 -1 N ASN A 847 O GLN A 902 SHEET 5 AA3 5 LEU A 830 ASP A 831 -1 N LEU A 830 O TYR A 846 SHEET 1 AA4 7 LEU A 435 PRO A 438 0 SHEET 2 AA4 7 VAL A 801 LYS A 807 1 O HIS A 805 N LEU A 437 SHEET 3 AA4 7 ALA A 896 ARG A 903 -1 O LEU A 899 N VAL A 804 SHEET 4 AA4 7 ARG A 845 TYR A 855 -1 N ASN A 847 O GLN A 902 SHEET 5 AA4 7 HIS A 862 LYS A 868 -1 O THR A 864 N ASN A 853 SHEET 6 AA4 7 TRP A 875 ASP A 879 -1 O PHE A 878 N ALA A 865 SHEET 7 AA4 7 SER A 882 THR A 885 -1 O SER A 884 N TYR A 877 SHEET 1 AA5 2 LYS A 756 LYS A 758 0 SHEET 2 AA5 2 LEU A 822 ASP A 824 1 O ASP A 824 N VAL A 757 SHEET 1 AA6 2 TRP A 778 CYS A 780 0 SHEET 2 AA6 2 GLU A 785 GLN A 787 -1 O GLN A 787 N TRP A 778 SHEET 1 AA7 2 GLY B 261 LEU B 262 0 SHEET 2 AA7 2 TYR B 327 VAL B 328 1 O VAL B 328 N GLY B 261 SHEET 1 AA8 4 ILE B 425 PHE B 432 0 SHEET 2 AA8 4 GLY B 411 VAL B 418 -1 N SER B 415 O THR B 428 SHEET 3 AA8 4 THR B 790 SER B 797 -1 O ASP B 794 N LYS B 414 SHEET 4 AA8 4 GLU B 770 LYS B 771 -1 N GLU B 770 O LYS B 791 SHEET 1 AA9 5 LEU B 435 LEU B 437 0 SHEET 2 AA9 5 VAL B 801 LEU B 806 1 O HIS B 805 N LEU B 435 SHEET 3 AA9 5 ALA B 896 ARG B 903 -1 O TYR B 897 N LEU B 806 SHEET 4 AA9 5 ARG B 845 TYR B 855 -1 N ASN B 847 O GLN B 902 SHEET 5 AA9 5 LEU B 830 ASP B 831 -1 N LEU B 830 O TYR B 846 SHEET 1 AB1 7 LEU B 435 LEU B 437 0 SHEET 2 AB1 7 VAL B 801 LEU B 806 1 O HIS B 805 N LEU B 435 SHEET 3 AB1 7 ALA B 896 ARG B 903 -1 O TYR B 897 N LEU B 806 SHEET 4 AB1 7 ARG B 845 TYR B 855 -1 N ASN B 847 O GLN B 902 SHEET 5 AB1 7 HIS B 862 LYS B 868 -1 O LYS B 868 N ILE B 849 SHEET 6 AB1 7 TRP B 875 ASP B 879 -1 O PHE B 878 N ALA B 865 SHEET 7 AB1 7 SER B 882 THR B 885 -1 O SER B 884 N TYR B 877 SHEET 1 AB2 2 LYS B 756 LYS B 758 0 SHEET 2 AB2 2 LEU B 822 ASP B 824 1 O ASP B 824 N VAL B 757 SHEET 1 AB3 2 TRP B 778 CYS B 780 0 SHEET 2 AB3 2 GLU B 785 GLN B 787 -1 O GLU B 785 N CYS B 780 LINK SG CYS A 419 ZN ZN A1001 1555 1555 2.31 LINK O GLU A 421 ZN ZN A1001 1555 1555 2.52 LINK SG CYS A 422 ZN ZN A1001 1555 1555 2.37 LINK SG CYS A 780 ZN ZN A1001 1555 1555 2.35 LINK SG CYS A 783 ZN ZN A1001 1555 1555 2.33 LINK SG CYS B 419 ZN ZN B1001 1555 1555 2.30 LINK SG CYS B 422 ZN ZN B1001 1555 1555 2.33 LINK SG CYS B 780 ZN ZN B1001 1555 1555 2.33 LINK SG CYS B 783 ZN ZN B1001 1555 1555 2.29 CRYST1 63.882 97.399 62.995 90.00 90.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015654 0.000000 0.000002 0.00000 SCALE2 0.000000 0.010267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015874 0.00000