HEADER OXIDOREDUCTASE 09-FEB-22 7R4P TITLE STRUCTURE OF HUMAN HYDROXYACID OXIDASE 1 BOUND WITH 6-AMINO-1-BENZYL- TITLE 2 5-(METHYLAMINO)PYRIMIDINE-2,4(1H,3H)-DIONE CAVEAT 7R4P I2Z A 402 HAS WRONG CHIRALITY AT ATOM C1 I2Z A 402 HAS WRONG CAVEAT 2 7R4P CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYACID OXIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAOX1,GLYCOLATE OXIDASE,GOX; COMPND 5 EC: 1.1.3.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HAO1, GOX1, HAOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HAO1, HYDROXYACID OXIDASE, GLYCOLATE OXIDASE, FRAGMENT SCREENING, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MACKINNON,G.A.BEZERRA,T.KROJER,A.R.BRADLEY,R.TALON,J.BRANDEO-NETO, AUTHOR 2 A.DOUANGAMATH,F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA, AUTHOR 3 U.OPPERMANN,P.E.BRENNAN,W.W.YUE REVDAT 2 31-JAN-24 7R4P 1 REMARK REVDAT 1 04-MAY-22 7R4P 0 JRNL AUTH S.MACKINNON,G.A.BEZERRA,T.KROJER,A.R.BRADLEY,R.TALON, JRNL AUTH 2 J.BRANDEO-NETO,A.DOUANGAMATH,F.VON DELFT,C.H.ARROWSMITH, JRNL AUTH 3 A.EDWARDS,C.BOUNTRA,U.OPPERMANN,P.E.BRENNAN,W.W.YUE JRNL TITL STRUCTURE OF HUMAN HYDROXYACID OXIDASE 1 BOUND WITH JRNL TITL 2 5-BROMO-N-METHYL-1H-INDAZOLE-3-CARBOXAMIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 73234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3937 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4535 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 245 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2538 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.082 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2753 ; 0.023 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2633 ; 0.005 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3756 ; 2.488 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6032 ; 1.721 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 7.231 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;27.266 ;20.752 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;12.238 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.814 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.183 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3236 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 634 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 362 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6302 25.6739 23.4868 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.0075 REMARK 3 T33: 0.0691 T12: 0.0008 REMARK 3 T13: -0.0079 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.5033 L22: 1.2531 REMARK 3 L33: 0.4114 L12: -0.5976 REMARK 3 L13: 0.0719 L23: -0.1326 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: -0.0878 S13: 0.2785 REMARK 3 S21: 0.0606 S22: 0.0505 S23: -0.1535 REMARK 3 S31: -0.0536 S32: 0.0122 S33: -0.0120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7R4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292120479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 68.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.81900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GMB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MIB, PH 7, 30% PEG1000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.56500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.56500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.42000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.56500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.56500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.42000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 48.56500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 48.56500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.42000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 48.56500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 48.56500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.42000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LYS A 176 REMARK 465 LEU A 177 REMARK 465 PRO A 178 REMARK 465 PRO A 179 REMARK 465 GLN A 180 REMARK 465 LEU A 181 REMARK 465 ARG A 182 REMARK 465 GLU A 187 REMARK 465 THR A 188 REMARK 465 SER A 189 REMARK 465 THR A 190 REMARK 465 LEU A 191 REMARK 465 SER A 192 REMARK 465 PHE A 193 REMARK 465 SER A 194 REMARK 465 PRO A 195 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 ASN A 198 REMARK 465 PHE A 199 REMARK 465 GLY A 200 REMARK 465 ASP A 201 REMARK 465 ASP A 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 59 CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 141 CE NZ REMARK 470 LYS A 142 CD CE NZ REMARK 470 GLN A 146 CD OE1 NE2 REMARK 470 LYS A 149 CD CE NZ REMARK 470 LEU A 164 CG CD1 CD2 REMARK 470 VAL A 171 CG1 CG2 REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ASN A 185 CG OD1 ND2 REMARK 470 LEU A 205 CG CD1 CD2 REMARK 470 TYR A 208 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 209 CG1 CG2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 LYS A 223 NZ REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 249 CE NZ REMARK 470 LYS A 285 CE NZ REMARK 470 LYS A 337 CE NZ REMARK 470 GLN A 350 CG CD OE1 NE2 REMARK 470 LYS A 353 NZ REMARK 470 LYS A 357 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 26 N1 I2Z A 402 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 32 -127.48 54.18 REMARK 500 ASN A 56 92.80 72.33 REMARK 500 GLU A 59 51.77 -119.26 REMARK 500 PRO A 74 46.69 -87.53 REMARK 500 GLN A 264 -98.73 -107.41 REMARK 500 GLN A 324 45.71 -157.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 28 -15.43 REMARK 500 ARG A 28 -15.43 REMARK 500 ARG A 28 -15.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 754 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 755 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 756 DISTANCE = 6.01 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5QIB RELATED DB: PDB REMARK 900 RELATED ID: 5QIC RELATED DB: PDB REMARK 900 RELATED ID: 5QID RELATED DB: PDB REMARK 900 RELATED ID: 5QIE RELATED DB: PDB REMARK 900 RELATED ID: 5QIF RELATED DB: PDB REMARK 900 RELATED ID: 5QIG RELATED DB: PDB REMARK 900 RELATED ID: 5QIH RELATED DB: PDB DBREF 7R4P A 1 362 UNP Q9UJM8 HAOX1_HUMAN 1 362 SEQRES 1 A 362 MET LEU PRO ARG LEU ILE CYS ILE ASN ASP TYR GLU GLN SEQRES 2 A 362 HIS ALA LYS SER VAL LEU PRO LYS SER ILE TYR ASP TYR SEQRES 3 A 362 TYR ARG SER GLY ALA ASN ASP GLU GLU THR LEU ALA ASP SEQRES 4 A 362 ASN ILE ALA ALA PHE SER ARG TRP LYS LEU TYR PRO ARG SEQRES 5 A 362 MET LEU ARG ASN VAL ALA GLU THR ASP LEU SER THR SER SEQRES 6 A 362 VAL LEU GLY GLN ARG VAL SER MET PRO ILE CYS VAL GLY SEQRES 7 A 362 ALA THR ALA MET GLN ARG MET ALA HIS VAL ASP GLY GLU SEQRES 8 A 362 LEU ALA THR VAL ARG ALA CYS GLN SER LEU GLY THR GLY SEQRES 9 A 362 MET MET LEU SER SER TRP ALA THR SER SER ILE GLU GLU SEQRES 10 A 362 VAL ALA GLU ALA GLY PRO GLU ALA LEU ARG TRP LEU GLN SEQRES 11 A 362 LEU TYR ILE TYR LYS ASP ARG GLU VAL THR LYS LYS LEU SEQRES 12 A 362 VAL ARG GLN ALA GLU LYS MET GLY TYR LYS ALA ILE PHE SEQRES 13 A 362 VAL THR VAL ASP THR PRO TYR LEU GLY ASN ARG LEU ASP SEQRES 14 A 362 ASP VAL ARG ASN ARG PHE LYS LEU PRO PRO GLN LEU ARG SEQRES 15 A 362 MET LYS ASN PHE GLU THR SER THR LEU SER PHE SER PRO SEQRES 16 A 362 GLU GLU ASN PHE GLY ASP ASP SER GLY LEU ALA ALA TYR SEQRES 17 A 362 VAL ALA LYS ALA ILE ASP PRO SER ILE SER TRP GLU ASP SEQRES 18 A 362 ILE LYS TRP LEU ARG ARG LEU THR SER LEU PRO ILE VAL SEQRES 19 A 362 ALA LYS GLY ILE LEU ARG GLY ASP ASP ALA ARG GLU ALA SEQRES 20 A 362 VAL LYS HIS GLY LEU ASN GLY ILE LEU VAL SER ASN HIS SEQRES 21 A 362 GLY ALA ARG GLN LEU ASP GLY VAL PRO ALA THR ILE ASP SEQRES 22 A 362 VAL LEU PRO GLU ILE VAL GLU ALA VAL GLU GLY LYS VAL SEQRES 23 A 362 GLU VAL PHE LEU ASP GLY GLY VAL ARG LYS GLY THR ASP SEQRES 24 A 362 VAL LEU LYS ALA LEU ALA LEU GLY ALA LYS ALA VAL PHE SEQRES 25 A 362 VAL GLY ARG PRO ILE VAL TRP GLY LEU ALA PHE GLN GLY SEQRES 26 A 362 GLU LYS GLY VAL GLN ASP VAL LEU GLU ILE LEU LYS GLU SEQRES 27 A 362 GLU PHE ARG LEU ALA MET ALA LEU SER GLY CYS GLN ASN SEQRES 28 A 362 VAL LYS VAL ILE ASP LYS THR LEU VAL ARG LYS HET FMN A 401 31 HET I2Z A 402 18 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM I2Z 6-AMINO-1-BENZYL-5-(METHYLAMINO)PYRIMIDINE-2,4(1H,3H)- HETNAM 2 I2Z DIONE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 I2Z C12 H16 N4 O2 FORMUL 4 HOH *256(H2 O) HELIX 1 AA1 CYS A 7 LEU A 19 1 13 HELIX 2 AA2 PRO A 20 SER A 29 1 10 HELIX 3 AA3 GLU A 34 TRP A 47 1 14 HELIX 4 AA4 MET A 82 ALA A 86 5 5 HELIX 5 AA5 ASP A 89 GLY A 102 1 14 HELIX 6 AA6 SER A 114 GLY A 122 1 9 HELIX 7 AA7 ASP A 136 MET A 150 1 15 HELIX 8 AA8 ARG A 167 ASN A 173 1 7 HELIX 9 AA9 GLY A 204 ILE A 213 1 10 HELIX 10 AB1 SER A 218 THR A 229 1 12 HELIX 11 AB2 ARG A 240 HIS A 250 1 11 HELIX 12 AB3 ALA A 270 GLU A 283 1 14 HELIX 13 AB4 LYS A 296 LEU A 306 1 11 HELIX 14 AB5 GLY A 314 SER A 347 1 34 HELIX 15 AB6 ASN A 351 ILE A 355 5 5 HELIX 16 AB7 ASP A 356 THR A 358 5 3 SHEET 1 AA1 2 LYS A 48 LEU A 49 0 SHEET 2 AA1 2 VAL A 360 ARG A 361 -1 O ARG A 361 N LYS A 48 SHEET 1 AA2 2 THR A 64 VAL A 66 0 SHEET 2 AA2 2 GLN A 69 VAL A 71 -1 O GLN A 69 N VAL A 66 SHEET 1 AA3 9 ILE A 75 VAL A 77 0 SHEET 2 AA3 9 MET A 105 LEU A 107 1 O MET A 106 N VAL A 77 SHEET 3 AA3 9 ARG A 127 LEU A 131 1 O GLN A 130 N LEU A 107 SHEET 4 AA3 9 ILE A 155 THR A 158 1 O PHE A 156 N LEU A 129 SHEET 5 AA3 9 ILE A 233 ILE A 238 1 O LYS A 236 N VAL A 157 SHEET 6 AA3 9 GLY A 254 VAL A 257 1 O LEU A 256 N ALA A 235 SHEET 7 AA3 9 GLU A 287 ASP A 291 1 O PHE A 289 N VAL A 257 SHEET 8 AA3 9 ALA A 310 VAL A 313 1 O PHE A 312 N LEU A 290 SHEET 9 AA3 9 ILE A 75 VAL A 77 1 N CYS A 76 O VAL A 311 CRYST1 97.130 97.130 80.840 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010295 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012370 0.00000