HEADER HYDROLASE 22-JUN-21 7R66 TITLE STRUCTURE OF PFP1 PROTEASE FROM THERMOCOCCUS THIOREDUCENS: LARGE UNIT TITLE 2 CELL AT 1.44 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: INTRACELLULAR PROTEASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS THIOREDUCENS; SOURCE 3 ORGANISM_TAXID: 277988; SOURCE 4 GENE: AMR53_10535; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTRACELLULAR, DISULFIDE BONDS, CATALYTIC TRIAD, PROTEASOME, KEYWDS 2 BACTERIA, SUPERSITE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MCPHERSON REVDAT 3 15-NOV-23 7R66 1 REMARK REVDAT 2 18-OCT-23 7R66 1 REMARK REVDAT 1 29-SEP-21 7R66 0 JRNL AUTH S.B.LARSON,A.MCPHERSON JRNL TITL STRUCTURE OF THE PFP1 PROTEASE FROM A HYPOTHERMOPHILIC JRNL TITL 2 ARCHER, THERMOCOCCUS THIOREDUCENS, IN TWO CRYSTAL FORMS JRNL REF ACTA CRYSTALLOGR. V. D73 749 2017 JRNL REFN ISSN 0365-110X JRNL DOI 10.1107/S2059798317010622 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 124235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 6116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.6900 - 4.4700 1.00 3968 174 0.1653 0.1729 REMARK 3 2 4.4700 - 3.5500 1.00 3943 193 0.1201 0.1409 REMARK 3 3 3.5500 - 3.1000 1.00 3922 210 0.1274 0.1508 REMARK 3 4 3.1000 - 2.8200 1.00 3966 205 0.1368 0.1781 REMARK 3 5 2.8200 - 2.6200 1.00 3913 207 0.1189 0.1467 REMARK 3 6 2.6200 - 2.4600 1.00 3943 211 0.1138 0.1529 REMARK 3 7 2.4600 - 2.3400 1.00 3958 177 0.1152 0.1348 REMARK 3 8 2.3400 - 2.2400 1.00 3915 216 0.1124 0.1655 REMARK 3 9 2.2400 - 2.1500 1.00 3955 191 0.1095 0.1420 REMARK 3 10 2.1500 - 2.0800 1.00 3917 201 0.1054 0.1354 REMARK 3 11 2.0800 - 2.0100 1.00 3908 237 0.1052 0.1384 REMARK 3 12 2.0100 - 1.9500 1.00 3946 200 0.1081 0.1587 REMARK 3 13 1.9500 - 1.9000 1.00 3930 200 0.1388 0.1938 REMARK 3 14 1.9000 - 1.8600 1.00 3920 204 0.1166 0.1772 REMARK 3 15 1.8600 - 1.8100 1.00 3951 246 0.1151 0.1599 REMARK 3 16 1.8100 - 1.7800 1.00 3920 206 0.1092 0.1648 REMARK 3 17 1.7800 - 1.7400 1.00 3940 200 0.1179 0.1699 REMARK 3 18 1.7400 - 1.7100 1.00 3936 196 0.1235 0.1825 REMARK 3 19 1.7100 - 1.6800 1.00 3966 183 0.1304 0.1816 REMARK 3 20 1.6800 - 1.6500 1.00 3948 190 0.1400 0.2003 REMARK 3 21 1.6500 - 1.6200 1.00 3903 225 0.1420 0.1755 REMARK 3 22 1.6200 - 1.6000 1.00 3988 204 0.1489 0.1818 REMARK 3 23 1.6000 - 1.5700 1.00 3846 184 0.1724 0.2324 REMARK 3 24 1.5700 - 1.5500 1.00 4018 197 0.1902 0.2558 REMARK 3 25 1.5500 - 1.5300 1.00 3954 200 0.2080 0.2518 REMARK 3 26 1.5300 - 1.5100 1.00 3930 189 0.2254 0.2727 REMARK 3 27 1.5100 - 1.4900 1.00 3880 244 0.2441 0.3111 REMARK 3 28 1.4900 - 1.4700 1.00 3970 190 0.2670 0.3218 REMARK 3 29 1.4700 - 1.4600 1.00 3937 230 0.2703 0.2922 REMARK 3 30 1.4600 - 1.4400 1.00 3928 206 0.2922 0.3068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.142 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.595 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5555 REMARK 3 ANGLE : 1.174 7559 REMARK 3 CHIRALITY : 0.082 848 REMARK 3 PLANARITY : 0.014 967 REMARK 3 DIHEDRAL : 13.643 2111 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7R66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.0 - 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1158 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 500K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 141230 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 75.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 47.00 REMARK 200 R MERGE (I) : 0.21600 REMARK 200 R SYM (I) : 0.21000 REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5TXW REMARK 200 REMARK 200 REMARK: HEXAGONAL PRISMS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP CRYSTALLIZATION USING REMARK 280 CRYSCHEM PLATES. DROPS WERE EQUAL AMOUNTS OF A 25 MG / ML REMARK 280 PROTEIN STOCK SOLUTION IN WATER AND THE RESERVOIR SOLUTION. THE REMARK 280 RESERVOIR WAS 1.4 M SODIUM CITRATE AT PH 6.5. CRYSTALLIZATION REMARK 280 WAS AT ROOM TEMPERATURE. DROPS WERE 10 UL TOTAL STARTING VOLUME, REMARK 280 RESERVOIRS 0.6 ML., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.51500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.59861 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.90533 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 75.51500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 43.59861 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.90533 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 75.51500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 43.59861 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.90533 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 87.19721 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 53.81067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 87.19721 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 53.81067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 87.19721 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.81067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS C 150 O3 PO4 C 401 1.46 REMARK 500 HG1 THR C 120 O4 PO4 C 401 1.55 REMARK 500 OE2 GLU A 12 HH TYR B 46 1.55 REMARK 500 HZ3 LYS B 113 O HOH B 306 1.57 REMARK 500 OE2 GLU C 12 HH TYR D 46 1.59 REMARK 500 O HOH C 607 O HOH C 630 1.65 REMARK 500 O HOH C 607 O HOH C 642 1.70 REMARK 500 OE1 GLU C 26 O HOH C 501 1.72 REMARK 500 OE2 GLU B 74 O HOH B 301 1.77 REMARK 500 O HOH D 387 O HOH D 404 1.78 REMARK 500 O HOH B 415 O HOH B 418 1.91 REMARK 500 O HOH C 602 O HOH C 612 1.92 REMARK 500 O HOH A 426 O HOH B 443 1.97 REMARK 500 O HOH A 316 O HOH A 365 2.00 REMARK 500 O HOH C 598 O HOH C 635 2.00 REMARK 500 O HOH B 324 O HOH B 381 2.02 REMARK 500 O HOH C 516 O HOH C 634 2.02 REMARK 500 O HOH B 428 O HOH B 431 2.04 REMARK 500 OE1 GLU B 91 O HOH B 303 2.06 REMARK 500 O HOH A 402 O HOH A 419 2.06 REMARK 500 O HOH A 404 O HOH A 425 2.08 REMARK 500 OE2 GLU A 137 O HOH A 301 2.11 REMARK 500 O HOH B 394 O HOH B 437 2.11 REMARK 500 O HOH B 458 O HOH B 469 2.11 REMARK 500 OE1 GLU A 137 O HOH A 302 2.12 REMARK 500 O HOH C 630 O HOH C 642 2.12 REMARK 500 O HOH A 379 O HOH A 438 2.13 REMARK 500 OE1 GLU A 91 O HOH A 303 2.14 REMARK 500 O HOH A 401 O HOH A 411 2.15 REMARK 500 O HOH A 303 O HOH A 366 2.16 REMARK 500 O HOH C 604 O HOH C 634 2.16 REMARK 500 O HOH A 435 O HOH A 440 2.18 REMARK 500 OE2 GLU D 138 O HOH D 301 2.18 REMARK 500 O HOH C 578 O HOH C 627 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 370 O HOH B 317 2665 1.72 REMARK 500 O HOH A 424 O HOH D 349 9555 1.94 REMARK 500 O HOH B 413 O HOH D 405 1556 2.12 REMARK 500 O HOH B 462 O HOH D 420 1556 2.15 REMARK 500 O HOH A 303 O HOH D 324 9555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 OCS A 100 -114.94 66.32 REMARK 500 SER A 119 -176.55 -172.78 REMARK 500 OCS B 100 -114.98 63.54 REMARK 500 SER B 119 -179.81 -174.23 REMARK 500 OCS C 100 -116.50 63.29 REMARK 500 OCS D 100 -117.06 67.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 37 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 471 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B 472 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B 473 DISTANCE = 10.35 ANGSTROMS REMARK 525 HOH C 654 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH D 421 DISTANCE = 6.94 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TXW RELATED DB: PDB DBREF1 7R66 A 1 166 UNP A0A0Q2XKL6_9EURY DBREF2 7R66 A A0A0Q2XKL6 1 166 DBREF1 7R66 B 1 166 UNP A0A0Q2XKL6_9EURY DBREF2 7R66 B A0A0Q2XKL6 1 166 DBREF1 7R66 C 1 166 UNP A0A0Q2XKL6_9EURY DBREF2 7R66 C A0A0Q2XKL6 1 166 DBREF1 7R66 D 1 166 UNP A0A0Q2XKL6_9EURY DBREF2 7R66 D A0A0Q2XKL6 1 166 SEQRES 1 A 166 MET LYS VAL LEU PHE LEU SER ALA ASP GLY PHE GLU ASP SEQRES 2 A 166 LEU GLU LEU ILE CYS PRO LEU HIS ARG ILE LYS GLU GLU SEQRES 3 A 166 GLY HIS GLU VAL TYR VAL ALA SER PHE GLU ARG GLY LYS SEQRES 4 A 166 ILE THR GLY LYS HIS GLY TYR SER VAL ASN VAL ASP LEU SEQRES 5 A 166 ALA PHE GLU GLU VAL GLY PRO ASP GLU PHE ASP ALA LEU SEQRES 6 A 166 VAL LEU PRO GLY GLY ARG ALA PRO GLU ILE VAL ARG LEU SEQRES 7 A 166 ASN GLU LYS ALA ILE GLU ILE THR ARG LYS MET PHE GLU SEQRES 8 A 166 ALA GLY LYS PRO VAL ALA SER ILE OCS HIS GLY PRO GLN SEQRES 9 A 166 ILE LEU ILE SER ALA GLY VAL LEU LYS GLY ARG LYS GLY SEQRES 10 A 166 THR SER THR ILE THR ILE ARG ASP ASP VAL VAL ASN ALA SEQRES 11 A 166 GLY ALA GLU TRP VAL ASN GLU GLU VAL VAL VAL ASP GLY SEQRES 12 A 166 ASN TRP VAL SER SER ARG HIS PRO GLY ASP LEU TYR ALA SEQRES 13 A 166 TRP MET ARG GLU PHE VAL LYS LEU LEU LYS SEQRES 1 B 166 MET LYS VAL LEU PHE LEU SER ALA ASP GLY PHE GLU ASP SEQRES 2 B 166 LEU GLU LEU ILE CYS PRO LEU HIS ARG ILE LYS GLU GLU SEQRES 3 B 166 GLY HIS GLU VAL TYR VAL ALA SER PHE GLU ARG GLY LYS SEQRES 4 B 166 ILE THR GLY LYS HIS GLY TYR SER VAL ASN VAL ASP LEU SEQRES 5 B 166 ALA PHE GLU GLU VAL GLY PRO ASP GLU PHE ASP ALA LEU SEQRES 6 B 166 VAL LEU PRO GLY GLY ARG ALA PRO GLU ILE VAL ARG LEU SEQRES 7 B 166 ASN GLU LYS ALA ILE GLU ILE THR ARG LYS MET PHE GLU SEQRES 8 B 166 ALA GLY LYS PRO VAL ALA SER ILE OCS HIS GLY PRO GLN SEQRES 9 B 166 ILE LEU ILE SER ALA GLY VAL LEU LYS GLY ARG LYS GLY SEQRES 10 B 166 THR SER THR ILE THR ILE ARG ASP ASP VAL VAL ASN ALA SEQRES 11 B 166 GLY ALA GLU TRP VAL ASN GLU GLU VAL VAL VAL ASP GLY SEQRES 12 B 166 ASN TRP VAL SER SER ARG HIS PRO GLY ASP LEU TYR ALA SEQRES 13 B 166 TRP MET ARG GLU PHE VAL LYS LEU LEU LYS SEQRES 1 C 166 MET LYS VAL LEU PHE LEU SER ALA ASP GLY PHE GLU ASP SEQRES 2 C 166 LEU GLU LEU ILE CYS PRO LEU HIS ARG ILE LYS GLU GLU SEQRES 3 C 166 GLY HIS GLU VAL TYR VAL ALA SER PHE GLU ARG GLY LYS SEQRES 4 C 166 ILE THR GLY LYS HIS GLY TYR SER VAL ASN VAL ASP LEU SEQRES 5 C 166 ALA PHE GLU GLU VAL GLY PRO ASP GLU PHE ASP ALA LEU SEQRES 6 C 166 VAL LEU PRO GLY GLY ARG ALA PRO GLU ILE VAL ARG LEU SEQRES 7 C 166 ASN GLU LYS ALA ILE GLU ILE THR ARG LYS MET PHE GLU SEQRES 8 C 166 ALA GLY LYS PRO VAL ALA SER ILE OCS HIS GLY PRO GLN SEQRES 9 C 166 ILE LEU ILE SER ALA GLY VAL LEU LYS GLY ARG LYS GLY SEQRES 10 C 166 THR SER THR ILE THR ILE ARG ASP ASP VAL VAL ASN ALA SEQRES 11 C 166 GLY ALA GLU TRP VAL ASN GLU GLU VAL VAL VAL ASP GLY SEQRES 12 C 166 ASN TRP VAL SER SER ARG HIS PRO GLY ASP LEU TYR ALA SEQRES 13 C 166 TRP MET ARG GLU PHE VAL LYS LEU LEU LYS SEQRES 1 D 166 MET LYS VAL LEU PHE LEU SER ALA ASP GLY PHE GLU ASP SEQRES 2 D 166 LEU GLU LEU ILE CYS PRO LEU HIS ARG ILE LYS GLU GLU SEQRES 3 D 166 GLY HIS GLU VAL TYR VAL ALA SER PHE GLU ARG GLY LYS SEQRES 4 D 166 ILE THR GLY LYS HIS GLY TYR SER VAL ASN VAL ASP LEU SEQRES 5 D 166 ALA PHE GLU GLU VAL GLY PRO ASP GLU PHE ASP ALA LEU SEQRES 6 D 166 VAL LEU PRO GLY GLY ARG ALA PRO GLU ILE VAL ARG LEU SEQRES 7 D 166 ASN GLU LYS ALA ILE GLU ILE THR ARG LYS MET PHE GLU SEQRES 8 D 166 ALA GLY LYS PRO VAL ALA SER ILE OCS HIS GLY PRO GLN SEQRES 9 D 166 ILE LEU ILE SER ALA GLY VAL LEU LYS GLY ARG LYS GLY SEQRES 10 D 166 THR SER THR ILE THR ILE ARG ASP ASP VAL VAL ASN ALA SEQRES 11 D 166 GLY ALA GLU TRP VAL ASN GLU GLU VAL VAL VAL ASP GLY SEQRES 12 D 166 ASN TRP VAL SER SER ARG HIS PRO GLY ASP LEU TYR ALA SEQRES 13 D 166 TRP MET ARG GLU PHE VAL LYS LEU LEU LYS MODRES 7R66 OCS A 100 CYS MODIFIED RESIDUE MODRES 7R66 OCS B 100 CYS MODIFIED RESIDUE MODRES 7R66 OCS C 100 CYS MODIFIED RESIDUE MODRES 7R66 OCS D 100 CYS MODIFIED RESIDUE HET OCS A 100 12 HET OCS B 100 12 HET OCS C 100 12 HET OCS D 100 12 HET MPD A 201 22 HET MPD A 202 22 HET MPD B 201 22 HET PO4 C 401 5 HET MPD D 201 22 HET PO4 D 202 5 HETNAM OCS CYSTEINESULFONIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM PO4 PHOSPHATE ION FORMUL 1 OCS 4(C3 H7 N O5 S) FORMUL 5 MPD 4(C6 H14 O2) FORMUL 8 PO4 2(O4 P 3-) FORMUL 11 HOH *598(H2 O) HELIX 1 AA1 GLU A 12 GLU A 26 1 15 HELIX 2 AA2 GLU A 55 VAL A 57 5 3 HELIX 3 AA3 ARG A 71 ARG A 77 1 7 HELIX 4 AA4 ASN A 79 ALA A 92 1 14 HELIX 5 AA5 GLY A 102 GLY A 110 1 9 HELIX 6 AA6 THR A 120 THR A 122 5 3 HELIX 7 AA7 ILE A 123 ALA A 130 1 8 HELIX 8 AA8 HIS A 150 GLY A 152 5 3 HELIX 9 AA9 ASP A 153 LYS A 166 1 14 HELIX 10 AB1 GLU B 12 GLU B 26 1 15 HELIX 11 AB2 GLU B 55 VAL B 57 5 3 HELIX 12 AB3 ARG B 71 ARG B 77 1 7 HELIX 13 AB4 ASN B 79 ALA B 92 1 14 HELIX 14 AB5 GLY B 102 GLY B 110 1 9 HELIX 15 AB6 THR B 120 THR B 122 5 3 HELIX 16 AB7 ILE B 123 ALA B 130 1 8 HELIX 17 AB8 HIS B 150 GLY B 152 5 3 HELIX 18 AB9 ASP B 153 LYS B 166 1 14 HELIX 19 AC1 GLU C 12 GLU C 26 1 15 HELIX 20 AC2 GLU C 55 VAL C 57 5 3 HELIX 21 AC3 ARG C 71 ARG C 77 1 7 HELIX 22 AC4 ASN C 79 ALA C 92 1 14 HELIX 23 AC5 GLY C 102 GLY C 110 1 9 HELIX 24 AC6 THR C 120 THR C 122 5 3 HELIX 25 AC7 ILE C 123 ALA C 130 1 8 HELIX 26 AC8 HIS C 150 GLY C 152 5 3 HELIX 27 AC9 ASP C 153 LEU C 165 1 13 HELIX 28 AD1 GLU D 12 GLU D 26 1 15 HELIX 29 AD2 GLU D 55 VAL D 57 5 3 HELIX 30 AD3 ARG D 71 ARG D 77 1 7 HELIX 31 AD4 ASN D 79 ALA D 92 1 14 HELIX 32 AD5 GLY D 102 GLY D 110 1 9 HELIX 33 AD6 THR D 120 THR D 122 5 3 HELIX 34 AD7 ILE D 123 ALA D 130 1 8 HELIX 35 AD8 HIS D 150 GLY D 152 5 3 HELIX 36 AD9 ASP D 153 LEU D 165 1 13 SHEET 1 AA1 7 LEU A 52 ALA A 53 0 SHEET 2 AA1 7 GLU A 29 SER A 34 1 N SER A 34 O LEU A 52 SHEET 3 AA1 7 LYS A 2 LEU A 6 1 N PHE A 5 O ALA A 33 SHEET 4 AA1 7 ALA A 64 LEU A 67 1 O ALA A 64 N LEU A 4 SHEET 5 AA1 7 VAL A 96 ILE A 99 1 O ALA A 97 N LEU A 67 SHEET 6 AA1 7 TRP A 145 SER A 148 1 O VAL A 146 N VAL A 96 SHEET 7 AA1 7 VAL A 140 ASP A 142 -1 N ASP A 142 O TRP A 145 SHEET 1 AA2 2 GLY A 38 THR A 41 0 SHEET 2 AA2 2 SER A 47 VAL A 50 -1 O VAL A 50 N GLY A 38 SHEET 1 AA3 2 LYS A 116 GLY A 117 0 SHEET 2 AA3 2 GLU A 133 TRP A 134 1 O GLU A 133 N GLY A 117 SHEET 1 AA4 7 LEU B 52 ALA B 53 0 SHEET 2 AA4 7 GLU B 29 SER B 34 1 N SER B 34 O LEU B 52 SHEET 3 AA4 7 LYS B 2 LEU B 6 1 N PHE B 5 O ALA B 33 SHEET 4 AA4 7 ALA B 64 LEU B 67 1 O ALA B 64 N LEU B 4 SHEET 5 AA4 7 VAL B 96 ILE B 99 1 O ALA B 97 N LEU B 67 SHEET 6 AA4 7 TRP B 145 SER B 148 1 O VAL B 146 N VAL B 96 SHEET 7 AA4 7 VAL B 139 ASP B 142 -1 N ASP B 142 O TRP B 145 SHEET 1 AA5 2 GLY B 38 THR B 41 0 SHEET 2 AA5 2 SER B 47 VAL B 50 -1 O VAL B 50 N GLY B 38 SHEET 1 AA6 2 LYS B 116 GLY B 117 0 SHEET 2 AA6 2 GLU B 133 TRP B 134 1 O GLU B 133 N GLY B 117 SHEET 1 AA7 7 LEU C 52 ALA C 53 0 SHEET 2 AA7 7 GLU C 29 SER C 34 1 N SER C 34 O LEU C 52 SHEET 3 AA7 7 LYS C 2 LEU C 6 1 N PHE C 5 O ALA C 33 SHEET 4 AA7 7 ALA C 64 LEU C 67 1 O ALA C 64 N LEU C 4 SHEET 5 AA7 7 VAL C 96 ILE C 99 1 O ALA C 97 N LEU C 67 SHEET 6 AA7 7 TRP C 145 SER C 148 1 O VAL C 146 N VAL C 96 SHEET 7 AA7 7 VAL C 140 ASP C 142 -1 N ASP C 142 O TRP C 145 SHEET 1 AA8 2 GLY C 38 THR C 41 0 SHEET 2 AA8 2 SER C 47 VAL C 50 -1 O VAL C 50 N GLY C 38 SHEET 1 AA9 2 LYS C 116 GLY C 117 0 SHEET 2 AA9 2 GLU C 133 TRP C 134 1 O GLU C 133 N GLY C 117 SHEET 1 AB1 7 LEU D 52 ALA D 53 0 SHEET 2 AB1 7 GLU D 29 SER D 34 1 N SER D 34 O LEU D 52 SHEET 3 AB1 7 LYS D 2 LEU D 6 1 N PHE D 5 O ALA D 33 SHEET 4 AB1 7 ALA D 64 LEU D 67 1 O ALA D 64 N LEU D 4 SHEET 5 AB1 7 VAL D 96 ILE D 99 1 O ALA D 97 N LEU D 67 SHEET 6 AB1 7 TRP D 145 SER D 148 1 O VAL D 146 N VAL D 96 SHEET 7 AB1 7 VAL D 139 ASP D 142 -1 N ASP D 142 O TRP D 145 SHEET 1 AB2 2 GLY D 38 THR D 41 0 SHEET 2 AB2 2 SER D 47 VAL D 50 -1 O VAL D 50 N GLY D 38 SHEET 1 AB3 2 LYS D 116 GLY D 117 0 SHEET 2 AB3 2 GLU D 133 TRP D 134 1 O GLU D 133 N GLY D 117 SSBOND 1 CYS A 18 CYS B 18 1555 1555 2.02 SSBOND 2 CYS C 18 CYS D 18 1555 1555 2.03 LINK C ILE A 99 N OCS A 100 1555 1555 1.35 LINK C OCS A 100 N HIS A 101 1555 1555 1.33 LINK C ILE B 99 N OCS B 100 1555 1555 1.35 LINK C OCS B 100 N HIS B 101 1555 1555 1.34 LINK C ILE C 99 N OCS C 100 1555 1555 1.35 LINK C OCS C 100 N HIS C 101 1555 1555 1.34 LINK C ILE D 99 N OCS D 100 1555 1555 1.34 LINK C OCS D 100 N HIS D 101 1555 1555 1.33 CRYST1 151.030 151.030 80.716 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006621 0.003823 0.000000 0.00000 SCALE2 0.000000 0.007646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012389 0.00000