HEADER HYDROLASE/DNA 26-JUN-21 7R8G TITLE CRYSTAL STRUCTURE OF PSEUDOOCEANICOLA LIPOLYTICUS ARGONAUTE BOUND TO TITLE 2 5' OH GUIDE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGONAUTE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3'); COMPND 8 CHAIN: T; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOOCEANICOLA LIPOLYTICUS; SOURCE 3 ORGANISM_TAXID: 2029104; SOURCE 4 GENE: CVM52_05730; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: PSEUDOOCEANICOLA LIPOLYTICUS; SOURCE 10 ORGANISM_TAXID: 2029104 KEYWDS ARGONAUTE, AGO, DNA GUIDE, RNA CLEAVAGE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHIN,K.S.MURAKAMI REVDAT 3 22-MAY-24 7R8G 1 REMARK REVDAT 2 28-DEC-22 7R8G 1 JRNL REVDAT 1 06-JUL-22 7R8G 0 JRNL AUTH L.LISITSKAYA,Y.SHIN,A.AGAPOV,A.OLINA,E.KROPOCHEVA, JRNL AUTH 2 S.RYAZANSKY,A.A.ARAVIN,D.ESYUNINA,K.S.MURAKAMI, JRNL AUTH 3 A.KULBACHINSKIY JRNL TITL PROGRAMMABLE RNA TARGETING BY BACTERIAL ARGONAUTE NUCLEASES JRNL TITL 2 WITH UNCONVENTIONAL GUIDE BINDING AND CLEAVAGE SPECIFICITY. JRNL REF NAT COMMUN V. 13 4624 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35941106 JRNL DOI 10.1038/S41467-022-32079-5 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.310 REMARK 3 FREE R VALUE TEST SET COUNT : 2003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8600 - 6.0200 1.00 3293 151 0.1540 0.1640 REMARK 3 2 6.0200 - 4.7800 1.00 3206 144 0.1831 0.2215 REMARK 3 3 4.7800 - 4.1800 1.00 3192 142 0.1670 0.2285 REMARK 3 4 4.1700 - 3.7900 1.00 3185 143 0.2075 0.2555 REMARK 3 5 3.7900 - 3.5200 1.00 3192 146 0.2173 0.2791 REMARK 3 6 3.5200 - 3.3100 1.00 3153 139 0.2653 0.3512 REMARK 3 7 3.3100 - 3.1500 1.00 3165 143 0.2742 0.3393 REMARK 3 8 3.1500 - 3.0100 1.00 3162 143 0.2965 0.3709 REMARK 3 9 3.0100 - 2.8900 1.00 3129 143 0.2864 0.3638 REMARK 3 10 2.8900 - 2.7900 1.00 3180 141 0.3188 0.3241 REMARK 3 11 2.7900 - 2.7100 1.00 3164 145 0.3213 0.3673 REMARK 3 12 2.7100 - 2.6300 1.00 3153 141 0.3433 0.3776 REMARK 3 13 2.6300 - 2.5600 1.00 3121 139 0.3157 0.3482 REMARK 3 14 2.5600 - 2.5000 1.00 3166 143 0.3362 0.3829 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.416 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6506 REMARK 3 ANGLE : 1.083 8861 REMARK 3 CHIRALITY : 0.058 970 REMARK 3 PLANARITY : 0.010 1109 REMARK 3 DIHEDRAL : 18.375 2469 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7R8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46475 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.0, 8% PEG 8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 100.29900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 100.29900 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 100.29900 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 100.29900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 100.29900 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 100.29900 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 100.29900 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 100.29900 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 100.29900 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 100.29900 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 100.29900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.29900 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 100.29900 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 100.29900 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 100.29900 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 100.29900 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 100.29900 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 100.29900 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 100.29900 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 100.29900 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 100.29900 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 100.29900 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 100.29900 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 100.29900 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 100.29900 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 100.29900 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 100.29900 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 100.29900 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 100.29900 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 100.29900 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 100.29900 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 100.29900 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 100.29900 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 100.29900 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 100.29900 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 100.29900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 770 REMARK 465 GLU A 771 REMARK 465 TYR A 772 REMARK 465 ASP A 773 REMARK 465 VAL A 774 REMARK 465 ASP A 775 REMARK 465 VAL A 776 REMARK 465 VAL A 777 REMARK 465 ARG A 778 REMARK 465 PHE A 779 REMARK 465 ALA A 780 REMARK 465 ASP A 781 REMARK 465 GLY A 782 REMARK 465 ASN A 783 REMARK 465 THR A 784 REMARK 465 GLY A 785 REMARK 465 GLU A 786 REMARK 465 ALA A 787 REMARK 465 SER A 788 REMARK 465 ALA A 789 REMARK 465 DG T 11 REMARK 465 DG T 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 285 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG T 6 O3' DG T 6 C3' -0.046 REMARK 500 DG T 14 O3' DG T 14 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 23 -163.38 -120.82 REMARK 500 LYS A 26 -63.04 -99.28 REMARK 500 ASP A 32 6.96 -65.30 REMARK 500 GLU A 33 -77.53 75.90 REMARK 500 ASP A 61 -109.55 60.21 REMARK 500 GLN A 64 -138.77 -78.85 REMARK 500 PHE A 65 96.42 68.77 REMARK 500 THR A 73 -73.76 -116.76 REMARK 500 VAL A 77 -21.77 72.38 REMARK 500 ARG A 80 -140.98 -77.81 REMARK 500 VAL A 81 -134.93 33.98 REMARK 500 ARG A 83 -93.95 67.50 REMARK 500 GLU A 93 101.96 51.48 REMARK 500 ASN A 96 65.10 -151.85 REMARK 500 ALA A 101 -160.53 -69.43 REMARK 500 ASP A 104 -161.92 -106.20 REMARK 500 ASP A 147 106.64 68.13 REMARK 500 ASP A 148 -13.00 59.74 REMARK 500 GLU A 164 22.76 -72.30 REMARK 500 ARG A 186 39.12 -87.96 REMARK 500 LYS A 194 -7.44 -53.67 REMARK 500 ASN A 197 -6.46 68.87 REMARK 500 ASN A 230 -66.79 56.55 REMARK 500 VAL A 231 107.52 -42.23 REMARK 500 ASN A 245 -111.31 65.46 REMARK 500 ALA A 246 57.79 -96.62 REMARK 500 ASP A 283 81.38 -69.87 REMARK 500 ALA A 289 65.65 -119.44 REMARK 500 PHE A 346 -163.41 -110.20 REMARK 500 VAL A 380 -75.48 -119.62 REMARK 500 SER A 402 -107.65 -137.94 REMARK 500 ARG A 425 70.27 -155.03 REMARK 500 ILE A 456 79.83 -100.44 REMARK 500 SER A 458 150.90 72.79 REMARK 500 ALA A 471 114.74 63.42 REMARK 500 PRO A 472 29.77 -66.91 REMARK 500 ALA A 474 -146.58 -79.69 REMARK 500 VAL A 525 144.77 179.09 REMARK 500 ASN A 566 38.76 73.93 REMARK 500 GLU A 576 -138.81 42.91 REMARK 500 SER A 586 132.47 -175.28 REMARK 500 LEU A 662 78.14 -105.68 REMARK 500 THR A 678 61.71 -166.20 REMARK 500 GLN A 679 -69.25 57.12 REMARK 500 LYS A 747 84.06 -159.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 577 GLY A 578 -149.84 REMARK 500 GLY A 707 ALA A 708 -146.18 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7R8G A 1 789 UNP A0A2M8J4C7_9RHOB DBREF2 7R8G A A0A2M8J4C7 1 789 DBREF 7R8G T 2 18 PDB 7R8G 7R8G 2 18 SEQRES 1 A 789 MET THR LEU GLU THR THR LEU PHE PRO LEU GLU GLY LEU SEQRES 2 A 789 GLU GLY LEU THR ALA SER TYR GLN LEU TYR ALA VAL LYS SEQRES 3 A 789 GLY LEU SER GLY LEU ASP GLU THR GLU TYR HIS LYS ASN SEQRES 4 A 789 VAL ASN LEU LEU VAL ARG ARG LEU SER PHE SER MET LYS SEQRES 5 A 789 ALA PRO PHE VAL ALA LEU SER ARG ASP GLY GLU GLN PHE SEQRES 6 A 789 ILE ALA VAL PRO ASN TYR VAL THR GLU PHE PRO VAL ASP SEQRES 7 A 789 HIS ARG VAL VAL ARG ALA MET VAL LYS LEU VAL PRO THR SEQRES 8 A 789 GLY GLU PRO LEU ASN LEU ARG PHE ASP ALA ALA ASP ASP SEQRES 9 A 789 GLU TYR ASP GLY LEU ARG LEU ARG TYR LEU ASP PHE VAL SEQRES 10 A 789 LEU GLN GLN PRO LEU PHE ALA ASN HIS HIS LEU TRP GLN SEQRES 11 A 789 PRO GLY SER GLY GLN PRO PHE PHE HIS LYS LYS PRO LEU SEQRES 12 A 789 LYS ARG LEU ASP ASP VAL ASP LEU TYR ASP GLY VAL SER SEQRES 13 A 789 VAL ARG ALA ALA LYS HIS PRO GLU GLY GLY PHE GLY ILE SEQRES 14 A 789 VAL CYS ASP ALA ARG SER LYS PHE ILE THR HIS THR PRO SEQRES 15 A 789 ILE GLY ALA ARG ALA ASP ARG LYS ARG LEU GLY LYS LEU SEQRES 16 A 789 ILE ASN ARG SER CYS LEU TYR LYS MET GLY ASP HIS TRP SEQRES 17 A 789 TYR GLN PHE ARG ILE ASP ALA VAL SER ASP TRP LYS VAL SEQRES 18 A 789 GLY GLU PRO SER LEU PHE GLU GLY ASN VAL PRO ILE SER SEQRES 19 A 789 LEU ALA GLN GLN LEU VAL ARG THR ALA GLY ASN ALA ALA SEQRES 20 A 789 PRO LYS SER ILE ILE ASP LEU ASP PRO GLU GLY GLY ALA SEQRES 21 A 789 LEU GLU TYR PHE THR SER THR ASN GLU ARG ARG MET ALA SEQRES 22 A 789 PRO ALA GLU LEU CYS PHE LEU ILE GLU ASP THR HIS GLY SEQRES 23 A 789 ARG ARG ALA ALA LYS LEU GLN ARG GLN THR ILE LEU SER SEQRES 24 A 789 PRO SER GLU ARG ARG ALA ARG VAL ASN GLY PHE ILE ARG SEQRES 25 A 789 ARG TYR LEU SER GLU LEU ASN ILE GLY GLY ALA LYS LEU SEQRES 26 A 789 SER ALA GLY ALA ARG ALA HIS ALA PHE PHE THR GLU THR SEQRES 27 A 789 HIS MET PRO PRO ALA LEU SER PHE GLY ASN GLY THR VAL SEQRES 28 A 789 LEU ALA PRO ASP THR SER LYS ASP ARG PHE GLN ALA MET SEQRES 29 A 789 GLN GLU TYR SER SER MET ARG ARG THR MET MET LEU ASP SEQRES 30 A 789 LYS LYS VAL GLY PHE PHE HIS GLN ASP VAL PHE PRO PRO SEQRES 31 A 789 GLN THR LEU LEU LEU PRO GLU SER VAL LYS LYS SER TRP SEQRES 32 A 789 GLY PRO ALA PHE ALA SER ASP PHE VAL GLY THR VAL GLN SEQRES 33 A 789 GLU LEU TYR PRO ALA GLY GLY TYR ARG PRO GLU ILE ILE SEQRES 34 A 789 GLU TYR ARG ASP LYS ALA TYR GLY GLY GLY VAL PRO GLY SEQRES 35 A 789 GLN MET LYS ALA LEU LEU GLU VAL ALA GLU ARG GLY GLU SEQRES 36 A 789 ILE LYS SER GLY ASP VAL LEU VAL MET LEU HIS ARG ILE SEQRES 37 A 789 ASN GLY ALA PRO ARG ALA GLN ASP LYS LEU ALA ALA MET SEQRES 38 A 789 VAL CYS ASN GLU PHE GLU LYS ARG PHE GLY LYS ARG VAL SEQRES 39 A 789 GLN VAL ILE HIS SER ASP SER PRO GLY ARG GLY TYR LYS SEQRES 40 A 789 ARG ILE PHE LYS ASN ASP LYS PRO THR TYR VAL GLN GLN SEQRES 41 A 789 ARG GLY ARG GLY VAL ASN ILE LYS GLY TYR LEU LYS GLY SEQRES 42 A 789 ALA ALA LEU ASN LYS VAL CYS LEU GLY ASN SER ARG TRP SEQRES 43 A 789 PRO PHE VAL LEU ARG ASP PRO LEU ASN ALA ASP VAL THR SEQRES 44 A 789 ILE GLY ILE ASP VAL LYS ASN ASN MET ALA VAL PHE THR SEQRES 45 A 789 MET VAL ALA GLU GLY GLY ARG ILE VAL ARG VAL GLN ARG SEQRES 46 A 789 SER ARG SER ARG GLN ARG GLU GLN LEU LEU GLU SER GLN SEQRES 47 A 789 VAL THR GLN VAL ILE THR GLU MET LEU SER LYS GLU LEU SEQRES 48 A 789 PRO GLU ILE LYS LYS GLN VAL GLN ARG VAL VAL ILE HIS SEQRES 49 A 789 ARG ASP GLY ARG ALA TRP PRO ALA GLU ILE ALA GLY ALA SEQRES 50 A 789 ARG LYS THR PHE ALA ASP MET ALA GLU SER GLY LEU ILE SEQRES 51 A 789 ALA VAL ASP ALA ASP VAL SER VAL PHE GLU VAL LEU LYS SEQRES 52 A 789 SER SER PRO ALA PRO LEU ARG LEU PHE SER PHE GLU GLU SEQRES 53 A 789 PRO THR GLN GLU ASN PRO LYS GLY VAL ILE ASN PRO VAL SEQRES 54 A 789 LEU GLY SER TRP LEU LYS LEU SER GLU ASN ASP GLY TYR SEQRES 55 A 789 ILE CYS THR THR GLY ALA PRO LEU LEU LEU GLN GLY THR SEQRES 56 A 789 ALA ASP PRO LEU HIS VAL ARG LYS ALA PHE GLY PRO MET SEQRES 57 A 789 ALA ILE GLU ASP ALA LEU LYS ASP VAL PHE ASP LEU SER SEQRES 58 A 789 CYS LEU THR TRP PRO LYS PRO ASP SER CYS MET ARG LEU SEQRES 59 A 789 PRO LEU THR ILE LYS LEU CYS ASP ILE ALA LEU PHE ASP SEQRES 60 A 789 ASP ALA ALA GLU TYR ASP VAL ASP VAL VAL ARG PHE ALA SEQRES 61 A 789 ASP GLY ASN THR GLY GLU ALA SER ALA SEQRES 1 T 17 DT DA DC DT DG DC DA DC DA DG DG DT DG SEQRES 2 T 17 DA DC DG DA HELIX 1 AA1 GLU A 33 LYS A 52 1 20 HELIX 2 AA2 TYR A 106 GLN A 119 1 14 HELIX 3 AA3 ASP A 188 LYS A 194 1 7 HELIX 4 AA4 LEU A 235 ALA A 243 1 9 HELIX 5 AA5 PRO A 248 ILE A 252 5 5 HELIX 6 AA6 ALA A 289 GLN A 295 1 7 HELIX 7 AA7 SER A 299 LEU A 315 1 17 HELIX 8 AA8 ASP A 359 ASP A 377 1 19 HELIX 9 AA9 GLU A 397 LYS A 401 1 5 HELIX 10 AB1 TRP A 403 TYR A 419 1 17 HELIX 11 AB2 PRO A 420 GLY A 423 5 4 HELIX 12 AB3 GLY A 439 ARG A 453 1 15 HELIX 13 AB4 ASP A 476 ARG A 489 1 14 HELIX 14 AB5 SER A 499 ARG A 504 1 6 HELIX 15 AB6 ASN A 526 VAL A 539 1 14 HELIX 16 AB7 CYS A 540 SER A 544 5 5 HELIX 17 AB8 LEU A 595 LEU A 611 1 17 HELIX 18 AB9 PRO A 612 ILE A 614 5 3 HELIX 19 AC1 TRP A 630 SER A 647 1 18 HELIX 20 AC2 GLY A 707 LEU A 711 5 5 HELIX 21 AC3 ALA A 729 CYS A 742 1 14 HELIX 22 AC4 PRO A 755 PHE A 766 1 12 SHEET 1 AA1 4 ALA A 333 PHE A 335 0 SHEET 2 AA1 4 THR A 2 THR A 5 -1 N LEU A 3 O PHE A 334 SHEET 3 AA1 4 LEU A 671 PHE A 674 -1 O PHE A 672 N GLU A 4 SHEET 4 AA1 4 VAL A 685 ILE A 686 -1 O ILE A 686 N SER A 673 SHEET 1 AA2 7 LEU A 128 TRP A 129 0 SHEET 2 AA2 7 PHE A 137 HIS A 139 -1 O PHE A 138 N TRP A 129 SHEET 3 AA2 7 VAL A 149 LYS A 161 -1 O ASP A 153 N HIS A 139 SHEET 4 AA2 7 PHE A 167 THR A 179 -1 O ILE A 178 N ASP A 150 SHEET 5 AA2 7 LEU A 7 GLU A 11 -1 N PHE A 8 O ILE A 169 SHEET 6 AA2 7 ALA A 323 ALA A 327 -1 O SER A 326 N GLU A 11 SHEET 7 AA2 7 LEU A 318 ILE A 320 -1 N LEU A 318 O LEU A 325 SHEET 1 AA3 5 VAL A 56 ALA A 57 0 SHEET 2 AA3 5 ILE A 66 PRO A 69 -1 O ALA A 67 N VAL A 56 SHEET 3 AA3 5 TYR A 20 VAL A 25 -1 N GLN A 21 O VAL A 68 SHEET 4 AA3 5 VAL A 86 PRO A 90 -1 O VAL A 89 N ALA A 24 SHEET 5 AA3 5 ASP A 78 HIS A 79 -1 N HIS A 79 O VAL A 86 SHEET 1 AA4 3 HIS A 207 ARG A 212 0 SHEET 2 AA4 3 SER A 199 MET A 204 -1 N TYR A 202 O TYR A 209 SHEET 3 AA4 3 CYS A 278 LEU A 280 -1 O PHE A 279 N LEU A 201 SHEET 1 AA5 3 ALA A 215 VAL A 216 0 SHEET 2 AA5 3 ALA A 260 PHE A 264 -1 O GLU A 262 N ALA A 215 SHEET 3 AA5 3 ARG A 270 PRO A 274 -1 O ALA A 273 N LEU A 261 SHEET 1 AA6 2 PRO A 224 PHE A 227 0 SHEET 2 AA6 2 PRO A 232 SER A 234 -1 O ILE A 233 N LEU A 226 SHEET 1 AA7 3 VAL A 351 LEU A 352 0 SHEET 2 AA7 3 LEU A 344 SER A 345 -1 N LEU A 344 O LEU A 352 SHEET 3 AA7 3 VAL A 549 LEU A 550 -1 O VAL A 549 N SER A 345 SHEET 1 AA8 4 GLU A 427 TYR A 431 0 SHEET 2 AA8 4 GLN A 391 PRO A 396 1 N LEU A 395 O ILE A 429 SHEET 3 AA8 4 ASP A 460 LEU A 465 1 O MET A 464 N LEU A 394 SHEET 4 AA8 4 ARG A 493 HIS A 498 1 O ARG A 493 N VAL A 461 SHEET 1 AA9 2 TYR A 506 PHE A 510 0 SHEET 2 AA9 2 PRO A 515 GLN A 519 -1 O THR A 516 N ILE A 509 SHEET 1 AB1 8 ILE A 580 ARG A 587 0 SHEET 2 AB1 8 MET A 568 ALA A 575 -1 N ALA A 569 O SER A 586 SHEET 3 AB1 8 VAL A 558 VAL A 564 -1 N ASP A 563 O VAL A 570 SHEET 4 AB1 8 ARG A 620 ASP A 626 1 O HIS A 624 N ILE A 560 SHEET 5 AB1 8 ASP A 655 LEU A 662 1 O VAL A 661 N ARG A 625 SHEET 6 AB1 8 LEU A 719 PHE A 725 -1 O ARG A 722 N GLU A 660 SHEET 7 AB1 8 ASP A 700 ILE A 703 -1 N ILE A 703 O LEU A 719 SHEET 8 AB1 8 TRP A 693 LYS A 695 -1 N LEU A 694 O TYR A 702 CRYST1 200.598 200.598 200.598 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004985 0.00000