HEADER OXIDOREDUCTASE 01-JUL-21 7RAD TITLE CRYSTAL STRUCTURE ANALYSIS OF ALDH1B1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE DEHYDROGENASE X, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALDEHYDE DEHYDROGENASE 5,ALDEHYDE DEHYDROGENASE FAMILY 1 COMPND 5 MEMBER B1; COMPND 6 EC: 1.2.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALDH1B1, ALDH5, ALDHX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MITOCHONDRIAL METABOLISM, PANCREAS CANCER, COLORECTAL CANCER, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.FERNANDEZ,J.K.CHEN REVDAT 2 18-OCT-23 7RAD 1 REMARK REVDAT 1 08-JUN-22 7RAD 0 JRNL AUTH D.FERNANDEZ JRNL TITL INHIBITORS TARGETED TO ALDEHYDE DEHYDROGENASE JRNL REF NAT.CHEM.BIOL. 2022 JRNL REFN ESSN 1552-4469 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 46140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2484 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3286 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7638 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 182 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.41000 REMARK 3 B22 (A**2) : 1.41000 REMARK 3 B33 (A**2) : -4.58000 REMARK 3 B12 (A**2) : 0.71000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.343 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.213 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8000 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7512 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10853 ; 1.587 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17253 ; 0.962 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 984 ; 6.624 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 364 ;37.170 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1275 ;17.938 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.775 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1173 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9116 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1868 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7RAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000257896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 -CRYSTAL SI(111) MONOCHROMATOR REMARK 200 OPTICS : FLAT SIDE-DEFLECTING, RH-COATED REMARK 200 SI MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 87.579 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16000 REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 1.08900 REMARK 200 R SYM FOR SHELL (I) : 1.08900 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3N80 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, GLYCEROL, ETHYLENEGLYCOL, REMARK 280 BICINE/TRIS, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.68000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.84000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.84000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.84000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 729 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 LYS A 411 CG CD CE NZ REMARK 470 ASN B 14 CG OD1 ND2 REMARK 470 GLN B 29 CG CD OE1 NE2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 ARG B 71 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 GLU B 320 CG CD OE1 OE2 REMARK 470 GLU B 324 CG CD OE1 OE2 REMARK 470 LYS B 330 CG CD CE NZ REMARK 470 LEU B 337 CG CD1 CD2 REMARK 470 LYS B 347 CG CD CE NZ REMARK 470 LYS B 366 CG CD CE NZ REMARK 470 LYS B 382 CG CD CE NZ REMARK 470 LYS B 411 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 17 78.84 -117.65 REMARK 500 ASN A 20 23.97 -143.21 REMARK 500 LEU A 120 -69.33 -107.31 REMARK 500 THR A 227 -84.92 -96.72 REMARK 500 SER A 260 -95.19 -102.96 REMARK 500 LEU A 269 -166.28 -117.97 REMARK 500 GLU A 312 -57.93 -29.29 REMARK 500 GLU A 376 19.54 -142.07 REMARK 500 PHE A 401 47.58 70.03 REMARK 500 GLN A 447 78.37 -101.85 REMARK 500 LYS A 469 -123.35 50.03 REMARK 500 LEU A 477 165.75 67.73 REMARK 500 ASN B 14 62.54 38.87 REMARK 500 ASP B 98 31.84 -99.46 REMARK 500 LEU B 120 -67.96 -102.18 REMARK 500 PRO B 214 152.26 -49.13 REMARK 500 THR B 227 -67.27 -105.21 REMARK 500 SER B 260 -95.80 -100.92 REMARK 500 LEU B 269 -165.07 -117.00 REMARK 500 LYS B 272 59.73 -140.46 REMARK 500 GLU B 336 109.56 -54.05 REMARK 500 ASP B 338 -14.63 150.49 REMARK 500 GLU B 376 -4.84 -143.05 REMARK 500 LYS B 411 -62.69 -100.60 REMARK 500 LYS B 469 -129.60 43.16 REMARK 500 LEU B 477 159.86 72.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 759 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 760 DISTANCE = 9.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 39 OG1 REMARK 620 2 VAL A 40 O 100.9 REMARK 620 3 ASP A 109 O 128.8 102.1 REMARK 620 4 ASP A 109 OD1 57.6 119.4 71.2 REMARK 620 5 GLN A 196 O 80.3 155.6 95.5 82.2 REMARK 620 6 HOH A 709 O 72.7 73.1 158.3 129.9 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 39 OG1 REMARK 620 2 VAL B 40 O 97.4 REMARK 620 3 ASP B 109 O 129.4 97.9 REMARK 620 4 ASP B 109 OD1 61.8 111.7 67.8 REMARK 620 5 GLN B 196 O 82.7 157.0 99.7 88.7 REMARK 620 6 HOH B 717 O 73.0 82.6 156.9 133.6 75.5 REMARK 620 N 1 2 3 4 5 DBREF 7RAD A 8 500 UNP P30837 AL1B1_HUMAN 25 517 DBREF 7RAD B 8 500 UNP P30837 AL1B1_HUMAN 25 517 SEQADV 7RAD ARG A 90 UNP P30837 LEU 107 VARIANT SEQADV 7RAD MET A 236 UNP P30837 VAL 253 VARIANT SEQADV 7RAD ARG B 90 UNP P30837 LEU 107 VARIANT SEQADV 7RAD MET B 236 UNP P30837 VAL 253 VARIANT SEQRES 1 A 493 LEU PRO SER PRO ILE LEU ASN PRO ASP ILE PRO TYR ASN SEQRES 2 A 493 GLN LEU PHE ILE ASN ASN GLU TRP GLN ASP ALA VAL SER SEQRES 3 A 493 LYS LYS THR PHE PRO THR VAL ASN PRO THR THR GLY GLU SEQRES 4 A 493 VAL ILE GLY HIS VAL ALA GLU GLY ASP ARG ALA ASP VAL SEQRES 5 A 493 ASP ARG ALA VAL LYS ALA ALA ARG GLU ALA PHE ARG LEU SEQRES 6 A 493 GLY SER PRO TRP ARG ARG MET ASP ALA SER GLU ARG GLY SEQRES 7 A 493 ARG LEU LEU ASN ARG LEU ALA ASP LEU VAL GLU ARG ASP SEQRES 8 A 493 ARG VAL TYR LEU ALA SER LEU GLU THR LEU ASP ASN GLY SEQRES 9 A 493 LYS PRO PHE GLN GLU SER TYR ALA LEU ASP LEU ASP GLU SEQRES 10 A 493 VAL ILE LYS VAL TYR ARG TYR PHE ALA GLY TRP ALA ASP SEQRES 11 A 493 LYS TRP HIS GLY LYS THR ILE PRO MET ASP GLY GLN HIS SEQRES 12 A 493 PHE CYS PHE THR ARG HIS GLU PRO VAL GLY VAL CYS GLY SEQRES 13 A 493 GLN ILE ILE PRO TRP ASN PHE PRO LEU VAL MET GLN GLY SEQRES 14 A 493 TRP LYS LEU ALA PRO ALA LEU ALA THR GLY ASN THR VAL SEQRES 15 A 493 VAL MET LYS VAL ALA GLU GLN THR PRO LEU SER ALA LEU SEQRES 16 A 493 TYR LEU ALA SER LEU ILE LYS GLU ALA GLY PHE PRO PRO SEQRES 17 A 493 GLY VAL VAL ASN ILE ILE THR GLY TYR GLY PRO THR ALA SEQRES 18 A 493 GLY ALA ALA ILE ALA GLN HIS MET ASP VAL ASP LYS VAL SEQRES 19 A 493 ALA PHE THR GLY SER THR GLU VAL GLY HIS LEU ILE GLN SEQRES 20 A 493 LYS ALA ALA GLY ASP SER ASN LEU LYS ARG VAL THR LEU SEQRES 21 A 493 GLU LEU GLY GLY LYS SER PRO SER ILE VAL LEU ALA ASP SEQRES 22 A 493 ALA ASP MET GLU HIS ALA VAL GLU GLN CYS HIS GLU ALA SEQRES 23 A 493 LEU PHE PHE ASN MET GLY GLN CYS CYS CYS ALA GLY SER SEQRES 24 A 493 ARG THR PHE VAL GLU GLU SER ILE TYR ASN GLU PHE LEU SEQRES 25 A 493 GLU ARG THR VAL GLU LYS ALA LYS GLN ARG LYS VAL GLY SEQRES 26 A 493 ASN PRO PHE GLU LEU ASP THR GLN GLN GLY PRO GLN VAL SEQRES 27 A 493 ASP LYS GLU GLN PHE GLU ARG VAL LEU GLY TYR ILE GLN SEQRES 28 A 493 LEU GLY GLN LYS GLU GLY ALA LYS LEU LEU CYS GLY GLY SEQRES 29 A 493 GLU ARG PHE GLY GLU ARG GLY PHE PHE ILE LYS PRO THR SEQRES 30 A 493 VAL PHE GLY GLY VAL GLN ASP ASP MET ARG ILE ALA LYS SEQRES 31 A 493 GLU GLU ILE PHE GLY PRO VAL GLN PRO LEU PHE LYS PHE SEQRES 32 A 493 LYS LYS ILE GLU GLU VAL VAL GLU ARG ALA ASN ASN THR SEQRES 33 A 493 ARG TYR GLY LEU ALA ALA ALA VAL PHE THR ARG ASP LEU SEQRES 34 A 493 ASP LYS ALA MET TYR PHE THR GLN ALA LEU GLN ALA GLY SEQRES 35 A 493 THR VAL TRP VAL ASN THR TYR ASN ILE VAL THR CYS HIS SEQRES 36 A 493 THR PRO PHE GLY GLY PHE LYS GLU SER GLY ASN GLY ARG SEQRES 37 A 493 GLU LEU GLY GLU ASP GLY LEU LYS ALA TYR THR GLU VAL SEQRES 38 A 493 LYS THR VAL THR ILE LYS VAL PRO GLN LYS ASN SER SEQRES 1 B 493 LEU PRO SER PRO ILE LEU ASN PRO ASP ILE PRO TYR ASN SEQRES 2 B 493 GLN LEU PHE ILE ASN ASN GLU TRP GLN ASP ALA VAL SER SEQRES 3 B 493 LYS LYS THR PHE PRO THR VAL ASN PRO THR THR GLY GLU SEQRES 4 B 493 VAL ILE GLY HIS VAL ALA GLU GLY ASP ARG ALA ASP VAL SEQRES 5 B 493 ASP ARG ALA VAL LYS ALA ALA ARG GLU ALA PHE ARG LEU SEQRES 6 B 493 GLY SER PRO TRP ARG ARG MET ASP ALA SER GLU ARG GLY SEQRES 7 B 493 ARG LEU LEU ASN ARG LEU ALA ASP LEU VAL GLU ARG ASP SEQRES 8 B 493 ARG VAL TYR LEU ALA SER LEU GLU THR LEU ASP ASN GLY SEQRES 9 B 493 LYS PRO PHE GLN GLU SER TYR ALA LEU ASP LEU ASP GLU SEQRES 10 B 493 VAL ILE LYS VAL TYR ARG TYR PHE ALA GLY TRP ALA ASP SEQRES 11 B 493 LYS TRP HIS GLY LYS THR ILE PRO MET ASP GLY GLN HIS SEQRES 12 B 493 PHE CYS PHE THR ARG HIS GLU PRO VAL GLY VAL CYS GLY SEQRES 13 B 493 GLN ILE ILE PRO TRP ASN PHE PRO LEU VAL MET GLN GLY SEQRES 14 B 493 TRP LYS LEU ALA PRO ALA LEU ALA THR GLY ASN THR VAL SEQRES 15 B 493 VAL MET LYS VAL ALA GLU GLN THR PRO LEU SER ALA LEU SEQRES 16 B 493 TYR LEU ALA SER LEU ILE LYS GLU ALA GLY PHE PRO PRO SEQRES 17 B 493 GLY VAL VAL ASN ILE ILE THR GLY TYR GLY PRO THR ALA SEQRES 18 B 493 GLY ALA ALA ILE ALA GLN HIS MET ASP VAL ASP LYS VAL SEQRES 19 B 493 ALA PHE THR GLY SER THR GLU VAL GLY HIS LEU ILE GLN SEQRES 20 B 493 LYS ALA ALA GLY ASP SER ASN LEU LYS ARG VAL THR LEU SEQRES 21 B 493 GLU LEU GLY GLY LYS SER PRO SER ILE VAL LEU ALA ASP SEQRES 22 B 493 ALA ASP MET GLU HIS ALA VAL GLU GLN CYS HIS GLU ALA SEQRES 23 B 493 LEU PHE PHE ASN MET GLY GLN CYS CYS CYS ALA GLY SER SEQRES 24 B 493 ARG THR PHE VAL GLU GLU SER ILE TYR ASN GLU PHE LEU SEQRES 25 B 493 GLU ARG THR VAL GLU LYS ALA LYS GLN ARG LYS VAL GLY SEQRES 26 B 493 ASN PRO PHE GLU LEU ASP THR GLN GLN GLY PRO GLN VAL SEQRES 27 B 493 ASP LYS GLU GLN PHE GLU ARG VAL LEU GLY TYR ILE GLN SEQRES 28 B 493 LEU GLY GLN LYS GLU GLY ALA LYS LEU LEU CYS GLY GLY SEQRES 29 B 493 GLU ARG PHE GLY GLU ARG GLY PHE PHE ILE LYS PRO THR SEQRES 30 B 493 VAL PHE GLY GLY VAL GLN ASP ASP MET ARG ILE ALA LYS SEQRES 31 B 493 GLU GLU ILE PHE GLY PRO VAL GLN PRO LEU PHE LYS PHE SEQRES 32 B 493 LYS LYS ILE GLU GLU VAL VAL GLU ARG ALA ASN ASN THR SEQRES 33 B 493 ARG TYR GLY LEU ALA ALA ALA VAL PHE THR ARG ASP LEU SEQRES 34 B 493 ASP LYS ALA MET TYR PHE THR GLN ALA LEU GLN ALA GLY SEQRES 35 B 493 THR VAL TRP VAL ASN THR TYR ASN ILE VAL THR CYS HIS SEQRES 36 B 493 THR PRO PHE GLY GLY PHE LYS GLU SER GLY ASN GLY ARG SEQRES 37 B 493 GLU LEU GLY GLU ASP GLY LEU LYS ALA TYR THR GLU VAL SEQRES 38 B 493 LYS THR VAL THR ILE LYS VAL PRO GLN LYS ASN SER HET NAD A 601 44 HET ZGJ A 602 30 HET NA A 603 1 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET NAD B 601 44 HET ZGJ B 602 30 HET NA B 603 1 HET EDO B 604 4 HET EDO B 605 4 HET EDO B 606 4 HET EDO B 607 4 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ZGJ 3-(2-METHOXYPHENYL)-1-(4-PHENYLPHENYL)-6,7,8,9- HETNAM 2 ZGJ TETRAHYDRO-5~{H}-IMIDAZO[1,2-A][1,3]DIAZEPINE HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 ZGJ 2(C26 H26 N3 O 1+) FORMUL 5 NA 2(NA 1+) FORMUL 6 EDO 8(C2 H6 O2) FORMUL 17 HOH *95(H2 O) HELIX 1 AA1 ASP A 55 PHE A 70 1 16 HELIX 2 AA2 SER A 74 MET A 79 1 6 HELIX 3 AA3 ASP A 80 ASP A 98 1 19 HELIX 4 AA4 ASP A 98 GLY A 111 1 14 HELIX 5 AA5 PRO A 113 LEU A 120 1 8 HELIX 6 AA6 LEU A 120 ALA A 136 1 17 HELIX 7 AA7 PHE A 170 THR A 185 1 16 HELIX 8 AA8 PRO A 198 GLY A 212 1 15 HELIX 9 AA9 GLY A 229 HIS A 235 1 7 HELIX 10 AB1 SER A 246 SER A 260 1 15 HELIX 11 AB2 ASP A 282 PHE A 296 1 15 HELIX 12 AB3 ASN A 297 GLN A 300 5 4 HELIX 13 AB4 ILE A 314 ARG A 329 1 16 HELIX 14 AB5 ASP A 346 GLU A 363 1 18 HELIX 15 AB6 MET A 393 GLU A 398 1 6 HELIX 16 AB7 LYS A 412 ASN A 422 1 11 HELIX 17 AB8 ASP A 435 LEU A 446 1 12 HELIX 18 AB9 PHE A 468 GLU A 470 5 3 HELIX 19 AC1 GLY A 478 ALA A 484 5 7 HELIX 20 AC2 ASP B 55 PHE B 70 1 16 HELIX 21 AC3 SER B 74 MET B 79 1 6 HELIX 22 AC4 ASP B 80 ASP B 98 1 19 HELIX 23 AC5 ASP B 98 GLY B 111 1 14 HELIX 24 AC6 PRO B 113 LEU B 120 1 8 HELIX 25 AC7 LEU B 120 ALA B 136 1 17 HELIX 26 AC8 PHE B 170 THR B 185 1 16 HELIX 27 AC9 PRO B 198 GLY B 212 1 15 HELIX 28 AD1 THR B 227 GLN B 234 1 8 HELIX 29 AD2 SER B 246 SER B 260 1 15 HELIX 30 AD3 ASP B 282 PHE B 296 1 15 HELIX 31 AD4 ASN B 297 GLN B 300 5 4 HELIX 32 AD5 ILE B 314 GLN B 328 1 15 HELIX 33 AD6 ASP B 346 GLU B 363 1 18 HELIX 34 AD7 MET B 393 GLU B 398 1 6 HELIX 35 AD8 LYS B 412 ASN B 422 1 11 HELIX 36 AD9 ASP B 435 LEU B 446 1 12 HELIX 37 AE1 PHE B 468 GLU B 470 5 3 HELIX 38 AE2 GLY B 478 ALA B 484 5 7 SHEET 1 AA1 2 LEU A 22 ILE A 24 0 SHEET 2 AA1 2 GLU A 27 GLN A 29 -1 O GLN A 29 N LEU A 22 SHEET 1 AA2 2 THR A 36 VAL A 40 0 SHEET 2 AA2 2 VAL A 47 ALA A 52 -1 O GLY A 49 N THR A 39 SHEET 1 AA310 THR A 143 ILE A 144 0 SHEET 2 AA310 HIS A 150 PRO A 158 -1 O CYS A 152 N ILE A 144 SHEET 3 AA310 THR A 486 LYS A 494 -1 O VAL A 491 N PHE A 153 SHEET 4 AA310 THR B 450 VAL B 453 1 O VAL B 451 N THR A 492 SHEET 5 AA310 ALA B 428 PHE B 432 1 N ALA B 429 O TRP B 452 SHEET 6 AA310 SER B 273 VAL B 277 1 N ILE B 276 O ALA B 430 SHEET 7 AA310 GLY B 305 GLU B 311 1 O ARG B 307 N SER B 275 SHEET 8 AA310 VAL B 404 PHE B 410 1 O PHE B 408 N THR B 308 SHEET 9 AA310 THR B 384 GLY B 387 1 N THR B 384 O GLN B 405 SHEET 10 AA310 LYS B 366 CYS B 369 -1 N LEU B 368 O VAL B 385 SHEET 1 AA4 6 VAL A 218 THR A 222 0 SHEET 2 AA4 6 THR A 188 VAL A 193 1 N MET A 191 O ILE A 221 SHEET 3 AA4 6 VAL A 161 ILE A 165 1 N CYS A 162 O THR A 188 SHEET 4 AA4 6 LYS A 240 THR A 244 1 O LYS A 240 N GLY A 163 SHEET 5 AA4 6 ARG A 264 GLU A 268 1 O GLU A 268 N PHE A 243 SHEET 6 AA4 6 GLY A 472 ASN A 473 -1 O ASN A 473 N LEU A 267 SHEET 1 AA510 LYS A 366 CYS A 369 0 SHEET 2 AA510 THR A 384 GLY A 387 -1 O GLY A 387 N LYS A 366 SHEET 3 AA510 VAL A 404 PHE A 410 1 O GLN A 405 N THR A 384 SHEET 4 AA510 GLY A 305 GLU A 311 1 N THR A 308 O PHE A 408 SHEET 5 AA510 SER A 273 VAL A 277 1 N SER A 275 O PHE A 309 SHEET 6 AA510 ALA A 428 PHE A 432 1 O PHE A 432 N ILE A 276 SHEET 7 AA510 THR A 450 VAL A 453 1 O TRP A 452 N ALA A 429 SHEET 8 AA510 THR B 486 LYS B 494 1 O THR B 490 N VAL A 451 SHEET 9 AA510 HIS B 150 PRO B 158 -1 N PHE B 153 O VAL B 491 SHEET 10 AA510 THR B 143 ILE B 144 -1 N ILE B 144 O CYS B 152 SHEET 1 AA6 2 LEU B 22 ILE B 24 0 SHEET 2 AA6 2 GLU B 27 GLN B 29 -1 O GLN B 29 N LEU B 22 SHEET 1 AA7 2 THR B 36 VAL B 40 0 SHEET 2 AA7 2 VAL B 47 ALA B 52 -1 O ILE B 48 N THR B 39 SHEET 1 AA8 6 VAL B 218 ILE B 221 0 SHEET 2 AA8 6 THR B 188 LYS B 192 1 N MET B 191 O ASN B 219 SHEET 3 AA8 6 VAL B 161 ILE B 165 1 N GLN B 164 O LYS B 192 SHEET 4 AA8 6 LYS B 240 THR B 244 1 O LYS B 240 N GLY B 163 SHEET 5 AA8 6 ARG B 264 GLU B 268 1 O ARG B 264 N VAL B 241 SHEET 6 AA8 6 GLY B 472 ASN B 473 -1 O ASN B 473 N LEU B 267 LINK OG1 THR A 39 NA NA A 603 1555 1555 2.57 LINK O VAL A 40 NA NA A 603 1555 1555 2.72 LINK O ASP A 109 NA NA A 603 1555 1555 2.69 LINK OD1 ASP A 109 NA NA A 603 1555 1555 2.58 LINK O GLN A 196 NA NA A 603 1555 1555 2.51 LINK NA NA A 603 O HOH A 709 1555 1555 2.88 LINK OG1 THR B 39 NA NA B 603 1555 1555 2.64 LINK O VAL B 40 NA NA B 603 1555 1555 2.73 LINK O ASP B 109 NA NA B 603 1555 1555 2.57 LINK OD1 ASP B 109 NA NA B 603 1555 1555 2.63 LINK O GLN B 196 NA NA B 603 1555 1555 2.49 LINK NA NA B 603 O HOH B 717 1555 1555 2.62 CRYST1 101.127 101.127 185.520 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009889 0.005709 0.000000 0.00000 SCALE2 0.000000 0.011418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005390 0.00000