HEADER HYDROLASE 06-JUL-21 7RBR TITLE THE CRYSTAL STRUCTURE OF PAPAIN-LIKE PROTEASE OF SARS COV-2, C111S TITLE 2 MUTANT, IN COMPLEX WITH A LYS48-LINKED DI-UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 3, NSP3, PL2-PRO, PAPAIN-LIKE COMPND 5 PROTEINASE, PL-PRO; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THREE N-TERMINAL RESIDUES (SNA) ARE EXPRESSION TAG; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: UBIQUITIN; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: K48 OF CHAIN B UBIQUITIN IS LINKED WITH C-TERMINUS OF COMPND 15 THE SECOND UBIQUITIN DOMAIN. THE SECOND DOMAIN HAS CYS IN POSITION 48 COMPND 16 AND IS NOT VISIBLE IN THE STRUCTURE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG53; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: UBB; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS COVID-19, CORONAVIRUS, SARS, COV-2, PAPAIN-LIKE PROTEASE, UBIQUITIN, KEYWDS 2 IDP51000, IDP52003, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,C.TESAR,M.ENDRES,B.T.LANHAM,P.WYDORSKI,D.FUSHMAN, AUTHOR 2 L.JOACHIMIAK,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 3 25-OCT-23 7RBR 1 REMARK REVDAT 2 31-MAY-23 7RBR 1 JRNL REVDAT 1 29-SEP-21 7RBR 0 JRNL AUTH P.M.WYDORSKI,J.OSIPIUK,B.T.LANHAM,C.TESAR,M.ENDRES,E.ENGLE, JRNL AUTH 2 R.JEDRZEJCZAK,V.MULLAPUDI,K.MICHALSKA,K.FIDELIS,D.FUSHMAN, JRNL AUTH 3 A.JOACHIMIAK,L.A.JOACHIMIAK JRNL TITL DUAL DOMAIN RECOGNITION DETERMINES SARS-COV-2 PLPRO JRNL TITL 2 SELECTIVITY FOR HUMAN ISG15 AND K48-LINKED DI-UBIQUITIN. JRNL REF NAT COMMUN V. 14 2366 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37185902 JRNL DOI 10.1038/S41467-023-38031-5 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 36778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1900 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2079 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3087 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.78000 REMARK 3 B22 (A**2) : -1.21000 REMARK 3 B33 (A**2) : -2.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.243 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3200 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3012 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4337 ; 1.588 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6967 ; 1.325 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 397 ; 6.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;39.567 ;23.791 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 569 ;14.813 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.253 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 427 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3620 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 718 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 315 REMARK 3 RESIDUE RANGE : A 501 A 504 REMARK 3 ORIGIN FOR THE GROUP (A): 3.730 -0.556 28.222 REMARK 3 T TENSOR REMARK 3 T11: 0.0219 T22: 0.1181 REMARK 3 T33: 0.0270 T12: 0.0291 REMARK 3 T13: -0.0077 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.2857 L22: 0.2374 REMARK 3 L33: 1.2730 L12: -0.0875 REMARK 3 L13: 0.0349 L23: -0.1585 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: 0.1064 S13: 0.0361 REMARK 3 S21: 0.0475 S22: 0.0086 S23: -0.0672 REMARK 3 S31: -0.0761 S32: -0.2325 S33: -0.0444 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 76 REMARK 3 RESIDUE RANGE : B 201 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): -6.012 -18.003 43.462 REMARK 3 T TENSOR REMARK 3 T11: 0.0921 T22: 0.2394 REMARK 3 T33: 0.2629 T12: -0.0901 REMARK 3 T13: 0.0559 T23: -0.1415 REMARK 3 L TENSOR REMARK 3 L11: 2.3534 L22: 4.7683 REMARK 3 L33: 1.7691 L12: -1.8741 REMARK 3 L13: -0.5108 L23: 1.2549 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: 0.2712 S13: -0.6151 REMARK 3 S21: 0.5174 S22: -0.3449 S23: 0.6222 REMARK 3 S31: 0.2516 S32: -0.5547 S33: 0.4048 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7RBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000257959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38678 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 47.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.92900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 6WRH, 5E6J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DI-SODIUM TARTRATE, 20% PEG REMARK 280 -3350,, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.02300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.06800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.02300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.06800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 VAL A 2 REMARK 465 ASP B 77 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 283 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 283 CB - CG - CD1 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 18.01 55.24 REMARK 500 SER A 49 1.15 -68.32 REMARK 500 GLU A 51 123.40 -38.16 REMARK 500 TYR A 95 71.34 -118.04 REMARK 500 ALA A 107 139.17 -173.41 REMARK 500 GLU A 143 77.18 -104.85 REMARK 500 THR A 259 -61.87 -94.45 REMARK 500 LYS A 279 -127.77 -119.53 REMARK 500 ASN A 308 -65.60 -132.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 189 SG REMARK 620 2 CYS A 192 SG 111.1 REMARK 620 3 CYS A 224 SG 118.9 108.8 REMARK 620 4 CYS A 226 SG 104.6 107.1 105.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP52003 RELATED DB: TARGETTRACK DBREF 7RBR A 1 315 UNP P0DTC1 R1A_SARS2 1564 1878 DBREF 7RBR B 1 77 UNP P0CG47 UBB_HUMAN 1 77 SEQADV 7RBR SER A -2 UNP P0DTC1 EXPRESSION TAG SEQADV 7RBR ASN A -1 UNP P0DTC1 EXPRESSION TAG SEQADV 7RBR ALA A 0 UNP P0DTC1 EXPRESSION TAG SEQADV 7RBR SER A 111 UNP P0DTC1 CYS 1674 ENGINEERED MUTATION SEQADV 7RBR ASP B 77 UNP P0CG47 MET 77 ENGINEERED MUTATION SEQRES 1 A 318 SER ASN ALA GLU VAL ARG THR ILE LYS VAL PHE THR THR SEQRES 2 A 318 VAL ASP ASN ILE ASN LEU HIS THR GLN VAL VAL ASP MET SEQRES 3 A 318 SER MET THR TYR GLY GLN GLN PHE GLY PRO THR TYR LEU SEQRES 4 A 318 ASP GLY ALA ASP VAL THR LYS ILE LYS PRO HIS ASN SER SEQRES 5 A 318 HIS GLU GLY LYS THR PHE TYR VAL LEU PRO ASN ASP ASP SEQRES 6 A 318 THR LEU ARG VAL GLU ALA PHE GLU TYR TYR HIS THR THR SEQRES 7 A 318 ASP PRO SER PHE LEU GLY ARG TYR MET SER ALA LEU ASN SEQRES 8 A 318 HIS THR LYS LYS TRP LYS TYR PRO GLN VAL ASN GLY LEU SEQRES 9 A 318 THR SER ILE LYS TRP ALA ASP ASN ASN SER TYR LEU ALA SEQRES 10 A 318 THR ALA LEU LEU THR LEU GLN GLN ILE GLU LEU LYS PHE SEQRES 11 A 318 ASN PRO PRO ALA LEU GLN ASP ALA TYR TYR ARG ALA ARG SEQRES 12 A 318 ALA GLY GLU ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA SEQRES 13 A 318 TYR CYS ASN LYS THR VAL GLY GLU LEU GLY ASP VAL ARG SEQRES 14 A 318 GLU THR MET SER TYR LEU PHE GLN HIS ALA ASN LEU ASP SEQRES 15 A 318 SER CYS LYS ARG VAL LEU ASN VAL VAL CYS LYS THR CYS SEQRES 16 A 318 GLY GLN GLN GLN THR THR LEU LYS GLY VAL GLU ALA VAL SEQRES 17 A 318 MET TYR MET GLY THR LEU SER TYR GLU GLN PHE LYS LYS SEQRES 18 A 318 GLY VAL GLN ILE PRO CYS THR CYS GLY LYS GLN ALA THR SEQRES 19 A 318 LYS TYR LEU VAL GLN GLN GLU SER PRO PHE VAL MET MET SEQRES 20 A 318 SER ALA PRO PRO ALA GLN TYR GLU LEU LYS HIS GLY THR SEQRES 21 A 318 PHE THR CYS ALA SER GLU TYR THR GLY ASN TYR GLN CYS SEQRES 22 A 318 GLY HIS TYR LYS HIS ILE THR SER LYS GLU THR LEU TYR SEQRES 23 A 318 CYS ILE ASP GLY ALA LEU LEU THR LYS SER SER GLU TYR SEQRES 24 A 318 LYS GLY PRO ILE THR ASP VAL PHE TYR LYS GLU ASN SER SEQRES 25 A 318 TYR THR THR THR ILE LYS SEQRES 1 B 77 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 77 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 77 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 77 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 77 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 77 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY ASP HET ZN A 501 1 HET CL A 502 1 HET CL A 503 1 HET EDO A 504 4 HET EDO B 201 4 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN ZN 2+ FORMUL 4 CL 2(CL 1-) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *169(H2 O) HELIX 1 AA1 THR A 26 GLY A 32 1 7 HELIX 2 AA2 HIS A 47 GLU A 51 5 5 HELIX 3 AA3 ASP A 61 HIS A 73 1 13 HELIX 4 AA4 SER A 78 LYS A 91 1 14 HELIX 5 AA5 ASN A 110 GLN A 121 1 12 HELIX 6 AA6 PRO A 129 ALA A 141 1 13 HELIX 7 AA7 ALA A 144 ASN A 156 1 13 HELIX 8 AA8 ASP A 164 GLN A 174 1 11 HELIX 9 AA9 VAL A 202 ALA A 204 5 3 HELIX 10 AB1 SER A 212 GLY A 219 1 8 HELIX 11 AB2 THR B 22 GLY B 35 1 14 HELIX 12 AB3 PRO B 37 ASP B 39 5 3 HELIX 13 AB4 LEU B 56 ASN B 60 5 5 SHEET 1 AA1 5 HIS A 17 ASP A 22 0 SHEET 2 AA1 5 THR A 4 THR A 10 -1 N VAL A 7 O GLN A 19 SHEET 3 AA1 5 THR A 54 VAL A 57 1 O PHE A 55 N PHE A 8 SHEET 4 AA1 5 THR A 34 LEU A 36 -1 N TYR A 35 O TYR A 56 SHEET 5 AA1 5 ALA A 39 ASP A 40 -1 O ALA A 39 N LEU A 36 SHEET 1 AA2 2 GLN A 97 VAL A 98 0 SHEET 2 AA2 2 LEU A 101 THR A 102 -1 O LEU A 101 N VAL A 98 SHEET 1 AA3 4 GLY A 193 LYS A 200 0 SHEET 2 AA3 4 LYS A 182 CYS A 189 -1 N ARG A 183 O LEU A 199 SHEET 3 AA3 4 GLN A 229 GLU A 238 -1 O GLU A 238 N LYS A 182 SHEET 4 AA3 4 VAL A 220 PRO A 223 -1 N ILE A 222 O ALA A 230 SHEET 1 AA4 4 GLY A 193 LYS A 200 0 SHEET 2 AA4 4 LYS A 182 CYS A 189 -1 N ARG A 183 O LEU A 199 SHEET 3 AA4 4 GLN A 229 GLU A 238 -1 O GLU A 238 N LYS A 182 SHEET 4 AA4 4 SER A 309 THR A 311 -1 O TYR A 310 N GLN A 237 SHEET 1 AA5 7 MET A 206 MET A 208 0 SHEET 2 AA5 7 PHE A 241 LEU A 253 1 O SER A 245 N TYR A 207 SHEET 3 AA5 7 TYR A 296 LYS A 306 -1 O VAL A 303 N MET A 244 SHEET 4 AA5 7 CYS A 260 GLY A 266 -1 N CYS A 260 O PHE A 304 SHEET 5 AA5 7 GLY A 271 SER A 278 -1 O LYS A 274 N GLU A 263 SHEET 6 AA5 7 LEU A 282 ASP A 286 -1 O ILE A 285 N HIS A 275 SHEET 7 AA5 7 LEU A 289 SER A 293 -1 O LEU A 289 N ASP A 286 SHEET 1 AA6 6 MET A 206 MET A 208 0 SHEET 2 AA6 6 PHE A 241 LEU A 253 1 O SER A 245 N TYR A 207 SHEET 3 AA6 6 TYR A 296 LYS A 306 -1 O VAL A 303 N MET A 244 SHEET 4 AA6 6 CYS A 260 GLY A 266 -1 N CYS A 260 O PHE A 304 SHEET 5 AA6 6 GLY A 271 SER A 278 -1 O LYS A 274 N GLU A 263 SHEET 6 AA6 6 GLY B 75 GLY B 76 1 O GLY B 76 N GLY A 271 SHEET 1 AA7 5 THR B 12 GLU B 16 0 SHEET 2 AA7 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 AA7 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 AA7 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA7 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK SG CYS A 189 ZN ZN A 501 1555 1555 2.19 LINK SG CYS A 192 ZN ZN A 501 1555 1555 2.21 LINK SG CYS A 224 ZN ZN A 501 1555 1555 2.23 LINK SG CYS A 226 ZN ZN A 501 1555 1555 2.37 CRYST1 148.046 50.136 71.927 90.00 111.84 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006755 0.000000 0.002707 0.00000 SCALE2 0.000000 0.019946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014978 0.00000