HEADER PEPTIDE BINDING PROTEIN 08-JUL-21 7RCW TITLE CRYSTAL STRUCTURE OF C. DIFFICILE PENICILLIN-BINDING PROTEIN 2 IN TITLE 2 COMPLEX WITH AMPICILLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE (STRAIN R20291); SOURCE 3 ORGANISM_COMMON: PEPTOCLOSTRIDIUM DIFFICILE; SOURCE 4 ORGANISM_TAXID: 645463; SOURCE 5 STRAIN: R20291; SOURCE 6 GENE: CDR20291_0985; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PEPTIDOGLYCAN, PBP, PBP2, CELL WALL, TRANSPEPTIDASE, B-LACTAM, GRAM- KEYWDS 2 POSITIVE, SPORE, SPORULATION, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SACCO,Y.CHEN REVDAT 3 18-OCT-23 7RCW 1 REMARK REVDAT 2 10-AUG-22 7RCW 1 JRNL REVDAT 1 23-MAR-22 7RCW 0 JRNL AUTH M.D.SACCO,S.WANG,S.R.ADAPA,X.ZHANG,E.M.LEWANDOWSKI, JRNL AUTH 2 M.V.GONGORA,D.KERAMISANOU,Z.D.ATLAS,J.A.TOWNSEND, JRNL AUTH 3 J.R.GATDULA,R.T.MORGAN,L.R.HAMMOND,M.T.MARTY,J.WANG, JRNL AUTH 4 P.J.ESWARA,I.GELIS,R.H.Y.JIANG,X.SUN,Y.CHEN JRNL TITL A UNIQUE CLASS OF ZN 2+ -BINDING SERINE-BASED PBPS UNDERLIES JRNL TITL 2 CEPHALOSPORIN RESISTANCE AND SPOROGENESIS IN CLOSTRIDIOIDES JRNL TITL 3 DIFFICILE. JRNL REF NAT COMMUN V. 13 4370 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35902581 JRNL DOI 10.1038/S41467-022-32086-6 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 29337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1505 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2046 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6430 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 3.33000 REMARK 3 B33 (A**2) : -1.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.875 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.387 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.288 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6584 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6197 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8866 ; 1.540 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14474 ; 1.190 ; 1.591 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 819 ; 7.561 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 320 ;35.801 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1228 ;18.505 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.280 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 854 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7291 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1240 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7RCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30882 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.65900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 6G9F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 0.2 M AMSO4, AND 0.1 M REMARK 280 NA CITRATE PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 100.09500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 36 REMARK 465 GLU A 37 REMARK 465 TYR A 38 REMARK 465 TYR A 39 REMARK 465 ASN A 40 REMARK 465 GLU A 41 REMARK 465 LEU A 42 REMARK 465 ALA A 43 REMARK 465 GLU A 44 REMARK 465 ASN A 45 REMARK 465 LYS A 46 REMARK 465 THR A 47 REMARK 465 TYR A 48 REMARK 465 LYS A 49 REMARK 465 VAL A 358 REMARK 465 ASP A 359 REMARK 465 ALA A 360 REMARK 465 LEU A 361 REMARK 465 GLY A 362 REMARK 465 ARG A 363 REMARK 465 ILE A 364 REMARK 465 SER A 365 REMARK 465 LYS A 366 REMARK 465 GLU A 367 REMARK 465 ILE A 368 REMARK 465 GLU A 369 REMARK 465 THR A 615 REMARK 465 GLN A 616 REMARK 465 ALA A 617 REMARK 465 LEU A 618 REMARK 465 LEU A 619 REMARK 465 LYS A 620 REMARK 465 SER A 621 REMARK 465 ASN A 622 REMARK 465 LEU A 623 REMARK 465 GLU A 624 REMARK 465 ARG A 625 REMARK 465 GLU A 626 REMARK 465 MET A 627 REMARK 465 ALA A 628 REMARK 465 ASN A 629 REMARK 465 ASP A 630 REMARK 465 PHE A 631 REMARK 465 VAL A 632 REMARK 465 ASP A 633 REMARK 465 ILE A 634 REMARK 465 THR A 635 REMARK 465 ARG A 636 REMARK 465 GLU A 637 REMARK 465 LYS A 638 REMARK 465 ASN A 639 REMARK 465 PRO A 640 REMARK 465 LYS A 641 REMARK 465 GLU A 642 REMARK 465 TYR A 643 REMARK 465 GLU A 644 REMARK 465 LYS A 645 REMARK 465 ARG A 646 REMARK 465 ILE A 647 REMARK 465 ASN A 648 REMARK 465 GLU A 649 REMARK 465 ILE A 650 REMARK 465 VAL A 651 REMARK 465 SER A 652 REMARK 465 TRP A 653 REMARK 465 ALA A 654 REMARK 465 ALA A 655 REMARK 465 GLU A 656 REMARK 465 LYS A 657 REMARK 465 LYS A 658 REMARK 465 THR A 659 REMARK 465 PRO A 660 REMARK 465 GLY A 661 REMARK 465 ARG A 662 REMARK 465 VAL A 663 REMARK 465 GLU A 664 REMARK 465 THR A 665 REMARK 465 MET A 666 REMARK 465 ASN A 667 REMARK 465 ARG A 668 REMARK 465 LEU A 669 REMARK 465 LYS A 670 REMARK 465 LYS A 671 REMARK 465 MET A 672 REMARK 465 ASN A 673 REMARK 465 VAL A 674 REMARK 465 LYS A 675 REMARK 465 GLU A 676 REMARK 465 ASP A 677 REMARK 465 ARG A 678 REMARK 465 ILE A 679 REMARK 465 GLU A 680 REMARK 465 GLU A 681 REMARK 465 VAL A 682 REMARK 465 ALA A 683 REMARK 465 ASP A 684 REMARK 465 LEU A 685 REMARK 465 ALA A 686 REMARK 465 VAL A 687 REMARK 465 PHE A 688 REMARK 465 SER A 689 REMARK 465 TYR A 690 REMARK 465 PHE A 691 REMARK 465 ASN A 692 REMARK 465 PHE A 693 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 88 -73.99 -129.62 REMARK 500 SER A 93 170.29 -55.91 REMARK 500 ASN A 123 66.60 -155.38 REMARK 500 LEU A 166 -166.92 -118.84 REMARK 500 LYS A 171 -38.50 -36.79 REMARK 500 PRO A 190 71.61 -64.07 REMARK 500 THR A 216 45.31 -95.23 REMARK 500 PRO A 264 178.48 -59.24 REMARK 500 SER A 282 37.10 -71.82 REMARK 500 LYS A 404 -119.24 55.25 REMARK 500 ASN A 447 -158.98 -139.57 REMARK 500 GLU A 460 -61.82 -124.89 REMARK 500 PRO A 470 57.39 -111.00 REMARK 500 PHE A 494 -1.43 -57.81 REMARK 500 MET A 520 62.48 -111.76 REMARK 500 HIS A 533 -76.34 -107.14 REMARK 500 MET A 540 106.45 -56.78 REMARK 500 LYS A 568 -128.04 64.14 REMARK 500 ILE A 570 -169.33 -102.67 REMARK 500 PRO A 606 120.89 -39.85 REMARK 500 LYS A 695 -160.52 -103.55 REMARK 500 GLN A 708 -168.62 -111.26 REMARK 500 ALA A 712 108.33 -174.77 REMARK 500 TYR A 745 15.21 56.22 REMARK 500 ASN A 751 33.37 -80.74 REMARK 500 VAL A 756 77.36 -118.26 REMARK 500 ASN A 763 92.04 -172.55 REMARK 500 GLN A 780 18.04 -142.87 REMARK 500 ASP A 789 64.26 -103.93 REMARK 500 GLU A 873 -71.64 -60.77 REMARK 500 ASP A 884 36.61 78.72 REMARK 500 VAL A 888 -72.01 -69.46 REMARK 500 ASP A 943 -78.50 -65.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1005 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 515 OD2 REMARK 620 2 ASP A 528 OD2 78.0 REMARK 620 3 HIS A 538 ND1 89.4 81.2 REMARK 620 4 CYS A 551 SG 129.4 128.0 132.1 REMARK 620 N 1 2 3 DBREF 7RCW A 36 962 UNP C9YK84 C9YK84_CLODR 36 962 SEQRES 1 A 927 TYR GLU TYR TYR ASN GLU LEU ALA GLU ASN LYS THR TYR SEQRES 2 A 927 LYS LYS LEU ALA ILE GLU ALA PRO ARG GLY GLU ILE LYS SEQRES 3 A 927 ASP ARG TYR GLY ARG LEU LEU ALA GLY ASN LYS ASN LEU SEQRES 4 A 927 PHE THR VAL GLN VAL SER GLY ASN ASP ILE ASN LYS LYS SEQRES 5 A 927 ASP ALA ASN LYS HIS SER ARG ALA ASN GLU ILE SER LEU SEQRES 6 A 927 LYS LEU ILE ASN LEU LEU GLU ARG ASN GLY GLU GLU TYR SEQRES 7 A 927 VAL ASP GLU PHE PRO ILE TYR VAL GLU ASN GLY LYS TYR SEQRES 8 A 927 TYR TYR THR TYR ASP ARG ASP ILE ARG GLU TYR LYS SER SEQRES 9 A 927 GLU ASN GLY ILE PRO ASN ASP TYR ASN ALA LYS GLU SER SEQRES 10 A 927 PHE TYR TYR LEU VAL ASP LYS LEU ILE SER ALA GLY ILE SEQRES 11 A 927 LEU SER GLN GLU ASP LYS ARG LEU ASP ALA THR ARG LEU SEQRES 12 A 927 GLN ALA LYS LEU ASN GLU ASN GLY TYR TYR PRO PRO ILE SEQRES 13 A 927 LEU VAL SER LYS TRP MET PHE THR ALA GLU ARG ASP LYS SEQRES 14 A 927 ARG ASP TRP LEU ALA SER TYR LYS ILE LYS GLU THR LYS SEQRES 15 A 927 LEU SER ALA LYS GLU ALA PHE GLU LYS VAL ARG ASN SER SEQRES 16 A 927 ASP ALA LEU GLU ILE ASP LYS SER LEU SER ASP GLU ASP SEQRES 17 A 927 ALA ARG LYS ILE MET VAL VAL ARG ASP LEU ILE LYS SER SEQRES 18 A 927 LYS GLY TYR SER GLN TYR ASN PRO VAL THR ILE ALA LYS SEQRES 19 A 927 ASP VAL GLY GLU THR THR ILE ALA GLN ILE GLU GLU SER SEQRES 20 A 927 ALA MET ASP LEU VAL GLY VAL SER ILE ALA VAL GLU PRO SEQRES 21 A 927 VAL ARG TYR TYR PRO ASN GLY SER LEU ALA SER HIS MET SEQRES 22 A 927 LEU GLY TYR VAL GLY LYS MET PRO SER THR GLN ILE GLU SEQRES 23 A 927 SER TYR LEU GLN LYS GLY TYR GLU THR GLY ASP MET VAL SEQRES 24 A 927 GLY LEU ALA GLY VAL GLU LYS SER ASN GLU SER ARG LEU SEQRES 25 A 927 ARG GLY THR ASP GLY TYR LYS MET VAL LYS VAL ASP ALA SEQRES 26 A 927 LEU GLY ARG ILE SER LYS GLU ILE GLU SER LYS LYS PRO SEQRES 27 A 927 LYS SER GLY ASP THR VAL TYR LEU THR LEU ASP LYS ASP SEQRES 28 A 927 LEU GLN GLU VAL SER ASP ASN ALA LEU LYS GLN ILE ILE SEQRES 29 A 927 GLU VAL ALA SER LYS GLY GLY THR PHE LYS SER LYS PHE SEQRES 30 A 927 GLY ASP LYS PRO ILE SER ALA TYR ALA GLY LYS ALA GLN SEQRES 31 A 927 SER ALA ALA LEU ILE ALA ILE ASP VAL LYS ASN GLY GLU SEQRES 32 A 927 VAL LEU ALA SER SER SER TYR PRO ASN TYR ASP PRO ASN SEQRES 33 A 927 LYS PHE ALA LYS GLY ILE SER THR GLU ASP TYR LYS ALA SEQRES 34 A 927 LEU GLN PRO LYS ASN PRO ASN ASP LEU LEU ALA GLY SER SEQRES 35 A 927 PRO LEU LEU ASN LEU VAL THR GLN GLY GLU PHE GLN PRO SEQRES 36 A 927 GLY SER SER PHE LYS MET LEU THR SER MET ALA ALA LEU SEQRES 37 A 927 GLU ASN GLY LEU ASP PRO ASN PHE THR ILE ASN ASP PRO SEQRES 38 A 927 GLY VAL ILE MET LEU GLY LYS LYS SER PHE GLY ASP TYR SEQRES 39 A 927 VAL TRP ASN HIS GLY ARG GLY ASN HIS GLY MET THR ASN SEQRES 40 A 927 LEU TYR LYS ALA ILE GLN GLU SER CYS ASN ILE TYR MET SEQRES 41 A 927 ALA THR ILE GLY THR GLY LYS THR TRP PRO ASP GLY LYS SEQRES 42 A 927 SER ILE GLY ILE ASP MET ASN ALA ASN LYS ILE LEU GLU SEQRES 43 A 927 TYR ALA LYS LEU PHE GLY LEU ASP GLN ASN THR GLY LEU SEQRES 44 A 927 GLN ASP GLU VAL GLU GLU ARG ALA GLY LYS VAL PRO SER SEQRES 45 A 927 THR GLU ASP LYS LEU LYS SER THR GLN ALA LEU LEU LYS SEQRES 46 A 927 SER ASN LEU GLU ARG GLU MET ALA ASN ASP PHE VAL ASP SEQRES 47 A 927 ILE THR ARG GLU LYS ASN PRO LYS GLU TYR GLU LYS ARG SEQRES 48 A 927 ILE ASN GLU ILE VAL SER TRP ALA ALA GLU LYS LYS THR SEQRES 49 A 927 PRO GLY ARG VAL GLU THR MET ASN ARG LEU LYS LYS MET SEQRES 50 A 927 ASN VAL LYS GLU ASP ARG ILE GLU GLU VAL ALA ASP LEU SEQRES 51 A 927 ALA VAL PHE SER TYR PHE ASN PHE ALA LYS TRP SER THR SEQRES 52 A 927 ALA ASP THR PHE ASN LEU ALA ILE GLY GLN GLY GLU ASN SEQRES 53 A 927 ALA TYR THR PRO ALA GLN ILE SER ARG TYR VAL ALA ALA SEQRES 54 A 927 ILE ALA ASN GLY GLY ASN LEU VAL GLU LEU SER VAL VAL SEQRES 55 A 927 ASP ARG ALA VAL SER SER ASP TYR SER SER VAL LYS ILE SEQRES 56 A 927 ASN ASP GLN LYS LYS VAL GLU LYS ILE PRO PHE LYS ASN SEQRES 57 A 927 PRO ASP ASN LEU LYS GLU LEU THR LYS GLY MET LYS LEU SEQRES 58 A 927 VAL ALA ARG GLN GLY THR ALA LYS SER ALA PHE ALA ASP SEQRES 59 A 927 PHE PRO ILE ASP VAL ALA ALA LYS THR GLY THR ALA GLU SEQRES 60 A 927 LYS SER GLY LYS ILE PRO THR ASP ASN GLU TYR GLU TYR SEQRES 61 A 927 LEU LYS SER HIS MET SER SER TYR ASN VAL ASN LEU ASN SEQRES 62 A 927 ASP ALA ILE LYS LEU ALA ASP LYS MET LYS ALA GLU LYS SEQRES 63 A 927 GLU LYS GLU LEU SER LEU ALA LYS GLU LYS GLU ILE LYS SEQRES 64 A 927 LYS LYS LEU GLU ASN LYS ASP LEU LYS ASP GLU GLU ARG SEQRES 65 A 927 LYS LYS LEU GLU GLU GLU LEU GLU ASP GLY VAL LYS VAL SEQRES 66 A 927 ARG LEU GLU ASP THR ASP LYS VAL ASN SER SER TYR LEU SEQRES 67 A 927 ARG LYS ALA ILE LYS GLU LEU ASN PRO LYS ILE THR ASP SEQRES 68 A 927 ASP GLN ILE ASP ARG PHE LYS GLN ASP TYR GLY SER PHE SEQRES 69 A 927 THR TRP THR VAL ALA PHE ALA PRO ALA ASP ASP PRO GLU SEQRES 70 A 927 ILE ALA VAL VAL CYS VAL ILE PRO GLN GLY ASP SER SER SEQRES 71 A 927 VAL PHE SER LEU LEU PRO THR ARG GLU VAL ILE GLY THR SEQRES 72 A 927 TYR MET GLY LEU HET PEG A1001 7 HET ACT A1002 4 HET GOL A1003 6 HET ZZ7 A1004 24 HET ZN A1005 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM ZZ7 (2R,4S)-2-[(R)-{[(2R)-2-AMINO-2- HETNAM 2 ZZ7 PHENYLACETYL]AMINO}(CARBOXY)METHYL]-5,5-DIMETHYL-1,3- HETNAM 3 ZZ7 THIAZOLIDINE-4-CARBOXYLIC ACID HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN ZZ7 AMPICILLIN (OPEN FORM) FORMUL 2 PEG C4 H10 O3 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 GOL C3 H8 O3 FORMUL 5 ZZ7 C16 H21 N3 O5 S FORMUL 6 ZN ZN 2+ FORMUL 7 HOH *28(H2 O) HELIX 1 AA1 SER A 80 ASN A 85 1 6 HELIX 2 AA2 ARG A 94 GLY A 110 1 17 HELIX 3 AA3 THR A 129 GLU A 140 1 12 HELIX 4 AA4 ASN A 148 ALA A 163 1 16 HELIX 5 AA5 ASP A 174 ASN A 185 1 12 HELIX 6 AA6 THR A 199 TYR A 211 1 13 HELIX 7 AA7 ALA A 220 ASN A 229 1 10 HELIX 8 AA8 SER A 240 LYS A 257 1 18 HELIX 9 AA9 GLY A 272 SER A 282 1 11 HELIX 10 AB1 ALA A 305 GLY A 310 1 6 HELIX 11 AB2 PRO A 316 THR A 318 5 3 HELIX 12 AB3 GLN A 319 GLY A 327 1 9 HELIX 13 AB4 GLY A 338 ASN A 343 1 6 HELIX 14 AB5 ASN A 343 GLY A 349 1 7 HELIX 15 AB6 ASP A 384 SER A 403 1 20 HELIX 16 AB7 PRO A 450 LYS A 455 1 6 HELIX 17 AB8 GLU A 460 GLN A 466 1 7 HELIX 18 AB9 ASN A 481 GLY A 486 1 6 HELIX 19 AC1 PRO A 490 SER A 493 5 4 HELIX 20 AC2 PHE A 494 GLU A 504 1 11 HELIX 21 AC3 ASP A 528 GLY A 534 1 7 HELIX 22 AC4 ASN A 542 SER A 550 1 9 HELIX 23 AC5 CYS A 551 GLY A 561 1 11 HELIX 24 AC6 ASN A 575 PHE A 586 1 12 HELIX 25 AC7 THR A 608 LYS A 613 1 6 HELIX 26 AC8 ALA A 699 ALA A 705 1 7 HELIX 27 AC9 THR A 714 ASN A 727 1 14 HELIX 28 AD1 ASN A 751 LYS A 754 5 4 HELIX 29 AD2 ASN A 763 ASP A 765 5 3 HELIX 30 AD3 ASN A 766 GLN A 780 1 15 HELIX 31 AD4 ALA A 783 ALA A 788 1 6 HELIX 32 AD5 ASN A 811 MET A 820 1 10 HELIX 33 AD6 SER A 821 ASN A 824 5 4 HELIX 34 AD7 ASN A 826 GLU A 858 1 33 HELIX 35 AD8 LYS A 863 GLU A 875 1 13 HELIX 36 AD9 THR A 885 ASN A 901 1 17 HELIX 37 AE1 THR A 905 ASP A 910 1 6 HELIX 38 AE2 SER A 945 MET A 960 1 16 SHEET 1 AA1 3 VAL A 265 ALA A 268 0 SHEET 2 AA1 3 LEU A 67 VAL A 79 -1 N VAL A 77 O ILE A 267 SHEET 3 AA1 3 VAL A 289 TYR A 298 -1 O VAL A 296 N LYS A 72 SHEET 1 AA2 6 VAL A 265 ALA A 268 0 SHEET 2 AA2 6 LEU A 67 VAL A 79 -1 N VAL A 77 O ILE A 267 SHEET 3 AA2 6 ILE A 60 LYS A 61 -1 N ILE A 60 O LEU A 68 SHEET 4 AA2 6 THR A 378 LEU A 381 1 O LEU A 381 N LYS A 61 SHEET 5 AA2 6 VAL A 737 VAL A 741 -1 O ARG A 739 N TYR A 380 SHEET 6 AA2 6 SER A 747 LYS A 749 -1 O VAL A 748 N ALA A 740 SHEET 1 AA3 2 ILE A 119 VAL A 121 0 SHEET 2 AA3 2 TYR A 126 TYR A 128 -1 O TYR A 127 N TYR A 120 SHEET 1 AA4 2 ILE A 191 LEU A 192 0 SHEET 2 AA4 2 MET A 197 PHE A 198 -1 O MET A 197 N LEU A 192 SHEET 1 AA5 2 TYR A 311 LYS A 314 0 SHEET 2 AA5 2 MET A 333 ALA A 337 -1 O LEU A 336 N TYR A 311 SHEET 1 AA6 2 GLY A 406 PHE A 408 0 SHEET 2 AA6 2 LYS A 415 ILE A 417 -1 O LYS A 415 N PHE A 408 SHEET 1 AA7 5 VAL A 439 TYR A 445 0 SHEET 2 AA7 5 ALA A 427 ASP A 433 -1 N ALA A 427 O TYR A 445 SHEET 3 AA7 5 ILE A 933 PRO A 940 -1 O VAL A 938 N ALA A 428 SHEET 4 AA7 5 ASP A 915 ALA A 926 -1 N ALA A 924 O VAL A 935 SHEET 5 AA7 5 ALA A 795 LYS A 806 -1 N LYS A 797 O VAL A 923 SHEET 1 AA8 2 ILE A 513 ASN A 514 0 SHEET 2 AA8 2 MET A 540 THR A 541 -1 O THR A 541 N ILE A 513 SHEET 1 AA9 2 VAL A 518 ILE A 519 0 SHEET 2 AA9 2 PHE A 526 GLY A 527 -1 O PHE A 526 N ILE A 519 SHEET 1 AB1 2 LYS A 562 THR A 563 0 SHEET 2 AB1 2 LYS A 568 SER A 569 -1 O LYS A 568 N THR A 563 SHEET 1 AB2 2 ASN A 730 VAL A 732 0 SHEET 2 AB2 2 VAL A 756 LYS A 758 -1 O GLU A 757 N LEU A 731 LINK OG SER A 492 C15 ZZ7 A1004 1555 1555 1.33 LINK OD2 ASP A 515 ZN ZN A1005 1555 1555 2.55 LINK OD2 ASP A 528 ZN ZN A1005 1555 1555 1.98 LINK ND1 HIS A 538 ZN ZN A1005 1555 1555 1.70 LINK SG CYS A 551 ZN ZN A1005 1555 1555 2.39 CISPEP 1 TYR A 445 PRO A 446 0 6.86 CISPEP 2 ASN A 469 PRO A 470 0 -17.76 CISPEP 3 TRP A 564 PRO A 565 0 -21.36 CISPEP 4 ALA A 926 PRO A 927 0 -14.15 CRYST1 62.910 200.190 70.680 90.00 100.11 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015896 0.000000 0.002834 0.00000 SCALE2 0.000000 0.004995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014371 0.00000