HEADER PEPTIDE BINDING PROTEIN 08-JUL-21 7RD0 TITLE CRYSTAL STRUCTURE OF C. DIFFICILE PENICILLIN-BINDING PROTEIN 3 IN APO TITLE 2 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE (STRAIN R20291); SOURCE 3 ORGANISM_COMMON: PEPTOCLOSTRIDIUM DIFFICILE; SOURCE 4 ORGANISM_TAXID: 645463; SOURCE 5 STRAIN: R20291; SOURCE 6 GENE: CDR20291_1067; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PEPTIDOGLYCAN, PBP, PBP2, CELL WALL, TRANSPEPTIDASE, B-LACTAM, GRAM- KEYWDS 2 POSITIVE, SPORE, SPORULATION, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SACCO,Y.CHEN REVDAT 3 18-OCT-23 7RD0 1 REMARK REVDAT 2 10-AUG-22 7RD0 1 JRNL REVDAT 1 23-MAR-22 7RD0 0 JRNL AUTH M.D.SACCO,S.WANG,S.R.ADAPA,X.ZHANG,E.M.LEWANDOWSKI, JRNL AUTH 2 M.V.GONGORA,D.KERAMISANOU,Z.D.ATLAS,J.A.TOWNSEND, JRNL AUTH 3 J.R.GATDULA,R.T.MORGAN,L.R.HAMMOND,M.T.MARTY,J.WANG, JRNL AUTH 4 P.J.ESWARA,I.GELIS,R.H.Y.JIANG,X.SUN,Y.CHEN JRNL TITL A UNIQUE CLASS OF ZN 2+ -BINDING SERINE-BASED PBPS UNDERLIES JRNL TITL 2 CEPHALOSPORIN RESISTANCE AND SPOROGENESIS IN CLOSTRIDIOIDES JRNL TITL 3 DIFFICILE. JRNL REF NAT COMMUN V. 13 4370 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35902581 JRNL DOI 10.1038/S41467-022-32086-6 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1529 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2063 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3823 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.77000 REMARK 3 B22 (A**2) : 1.97000 REMARK 3 B33 (A**2) : -3.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.046 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3900 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3761 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5222 ; 1.533 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8812 ; 1.236 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 7.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;37.204 ;24.866 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 800 ;16.466 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;10.599 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4228 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 693 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7RD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29788 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 1.00500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 5LP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 0.2 M AMSO4, 0.1 M NA REMARK 280 CITRATE PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.31500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.31500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.51000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.11000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.51000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.11000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.31500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.51000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.11000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.31500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.51000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.11000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 42 REMARK 465 ASP A 43 REMARK 465 LYS A 44 REMARK 465 TYR A 45 REMARK 465 LYS A 46 REMARK 465 GLN A 47 REMARK 465 SER A 48 REMARK 465 VAL A 49 REMARK 465 GLU A 50 REMARK 465 SER A 51 REMARK 465 GLN A 52 REMARK 465 SER A 53 REMARK 465 VAL A 54 REMARK 465 ALA A 198 REMARK 465 GLY A 199 REMARK 465 ASP A 200 REMARK 465 ALA A 201 REMARK 465 GLY A 202 REMARK 465 ASN A 203 REMARK 465 GLU A 204 REMARK 465 LYS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 207 REMARK 465 ASN A 208 REMARK 465 ILE A 209 REMARK 465 LEU A 210 REMARK 465 LYS A 211 REMARK 465 GLY A 212 REMARK 465 SER A 213 REMARK 465 VAL A 214 REMARK 465 LYS A 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 128 -168.94 -160.32 REMARK 500 ASP A 132 -172.76 -65.65 REMARK 500 ALA A 154 -170.96 -55.98 REMARK 500 ASN A 189 55.34 -148.77 REMARK 500 PHE A 196 46.88 81.23 REMARK 500 ASP A 274 68.70 -150.69 REMARK 500 ARG A 341 -50.21 85.83 REMARK 500 GLU A 412 -127.41 79.11 REMARK 500 ASN A 413 44.03 -93.15 REMARK 500 SER A 464 65.15 26.61 REMARK 500 ILE A 481 38.84 -140.80 REMARK 500 ASP A 486 -15.59 -47.30 REMARK 500 SER A 503 -161.79 -116.27 REMARK 500 ASN A 506 -121.60 72.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 758 DISTANCE = 6.19 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 323 SG REMARK 620 2 CYS A 338 SG 107.5 REMARK 620 3 HIS A 344 ND1 113.9 96.0 REMARK 620 4 CYS A 357 SG 99.3 129.7 111.1 REMARK 620 N 1 2 3 DBREF 7RD0 A 42 554 UNP C9YKG6 C9YKG6_CLODR 42 554 SEQRES 1 A 513 GLY ASP LYS TYR LYS GLN SER VAL GLU SER GLN SER VAL SEQRES 2 A 513 GLU LYS VAL GLU LEU ASN SER GLY ARG GLY ILE ILE TYR SEQRES 3 A 513 ASP ARG ASN ASN LYS LYS LEU THR ASP THR SER LYS SER SEQRES 4 A 513 GLN VAL LEU ILE VAL GLU LYS GLU LYS LEU ASN ASN ASN SEQRES 5 A 513 TYR LYS ILE LEU GLU LEU ILE LYS LYS ALA THR LYS MET SEQRES 6 A 513 ASN ASP LEU ASP ILE TYR LYS ALA VAL GLN GLU GLN LEU SEQRES 7 A 513 THR ARG PRO ILE ILE GLN ILE GLN THR LYS ASN ILE ASP SEQRES 8 A 513 LYS SER MET LYS LYS GLU LEU GLU LYS ASN GLY ILE MET SEQRES 9 A 513 VAL GLU GLU LYS THR MET ARG TYR ALA LYS ASP GLY LEU SEQRES 10 A 513 LEU SER HIS THR ILE GLY TYR ILE LYS GLU ASP ASP LYS SEQRES 11 A 513 SER GLY GLN SER GLY ILE GLU LYS SER MET ASP SER VAL SEQRES 12 A 513 LEU ARG ASN SER ASN GLU LYS TYR ILE SER ALA PHE LYS SEQRES 13 A 513 ALA GLY ASP ALA GLY ASN GLU LYS SER LEU ASN ILE LEU SEQRES 14 A 513 LYS GLY SER VAL LYS THR VAL ASP ASN LYS ASP LYS ASP SEQRES 15 A 513 ARG HIS LEU LYS THR THR ILE ASP TYR ASN ILE GLN LYS SEQRES 16 A 513 LYS LEU GLU GLN ILE LEU ASN LYS GLU GLU ASN PRO THR SEQRES 17 A 513 ALA ALA ILE ILE SER GLU ALA SER THR GLY GLU ILE LEU SEQRES 18 A 513 ALA MET CYS SER ARG PRO ASN PHE ASP GLN ASN ASP ILE SEQRES 19 A 513 SER LYS SER LEU LYS GLY LYS ASN GLY GLU PHE GLU ASN SEQRES 20 A 513 ARG VAL ILE LYS ALA THR TYR PRO PRO GLY SER VAL PHE SEQRES 21 A 513 LYS MET VAL VAL LEU PHE SER ALA LEU GLU ASN GLY VAL SEQRES 22 A 513 ILE ASP GLU ASN TYR THR TYR ASN CYS THR GLY LYS THR SEQRES 23 A 513 LYS VAL GLY ASN THR ASN GLU ILE LEU ARG CYS ASN LYS SEQRES 24 A 513 ARG ASP GLY HIS GLY PHE GLN ASN LEU ARG GLN ALA PHE SEQRES 25 A 513 SER ASN SER CYS ASN PRO ALA PHE LEU ASP ILE ALA MET SEQRES 26 A 513 LYS LEU GLY LYS GLU LYS ILE LEU LYS SER ALA GLU LYS SEQRES 27 A 513 LEU HIS LEU PHE GLU LYS VAL ASP ILE GLY LEU ASP GLU SEQRES 28 A 513 GLU LYS ILE ARG GLU ALA PRO LYS ASN ILE SER ILE ARG SEQRES 29 A 513 ASN LEU ALA ILE GLY GLN GLU ASN ILE GLU PHE THR PRO SEQRES 30 A 513 LEU GLN ILE ASN GLN MET THR GLN ILE ILE ALA ASN ASN SEQRES 31 A 513 GLY THR PHE LYS PRO LEU TYR LEU TYR LYS SER LEU VAL SEQRES 32 A 513 ASP ASN ASN MET ASN THR ILE LYS THR TYR LYS SER SER SEQRES 33 A 513 LYS LYS GLU GLU LEU ILE SER PRO TYR VAL CYS THR GLN SEQRES 34 A 513 VAL LYS GLU TYR MET LYS SER VAL SER ARG ILE GLY THR SEQRES 35 A 513 ALA LYS ASP LEU LYS ASP ILE GLU GLY GLY CYS GLY VAL SEQRES 36 A 513 LYS THR GLY THR ALA GLN SER SER LEU ASN LYS LYS ALA SEQRES 37 A 513 ILE ASP HIS GLY TRP ILE THR GLY PHE TYR PRO GLU GLU SEQRES 38 A 513 ARG PRO LYS TYR VAL ILE THR VAL LEU VAL GLU GLY THR SEQRES 39 A 513 GLN LYS GLY ASN LYS SER ALA THR PRO ILE PHE LYS GLU SEQRES 40 A 513 ILE CYS GLU SER ILE LYS HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET ZN A 605 1 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 4(C3 H8 O3) FORMUL 6 ZN ZN 2+ FORMUL 7 HOH *58(H2 O) HELIX 1 AA1 LYS A 87 ASN A 92 1 6 HELIX 2 AA2 ASN A 93 LYS A 105 1 13 HELIX 3 AA3 ASN A 107 GLN A 118 1 12 HELIX 4 AA4 ASP A 132 ASN A 142 1 11 HELIX 5 AA5 LEU A 159 GLY A 164 1 6 HELIX 6 AA6 SER A 175 MET A 181 1 7 HELIX 7 AA7 MET A 181 ARG A 186 1 6 HELIX 8 AA8 ASP A 231 LYS A 244 1 14 HELIX 9 AA9 ASP A 274 GLY A 281 1 8 HELIX 10 AB1 PRO A 297 VAL A 300 5 4 HELIX 11 AB2 PHE A 301 ASN A 312 1 12 HELIX 12 AB3 LEU A 349 SER A 356 1 8 HELIX 13 AB4 CYS A 357 LYS A 367 1 11 HELIX 14 AB5 GLY A 369 LEU A 380 1 12 HELIX 15 AB6 SER A 403 GLY A 410 1 8 HELIX 16 AB7 THR A 417 ASN A 430 1 14 HELIX 17 AB8 SER A 464 GLY A 482 1 19 HELIX 18 AB9 ALA A 484 LYS A 488 5 5 HELIX 19 AC1 ALA A 542 ILE A 553 1 12 SHEET 1 AA1 2 LYS A 56 GLU A 58 0 SHEET 2 AA1 2 TYR A 192 SER A 194 -1 O ILE A 193 N VAL A 57 SHEET 1 AA2 4 ILE A 66 TYR A 67 0 SHEET 2 AA2 4 HIS A 225 THR A 228 1 O THR A 228 N TYR A 67 SHEET 3 AA2 4 TYR A 440 VAL A 444 -1 O SER A 442 N LYS A 227 SHEET 4 AA2 4 THR A 450 THR A 453 -1 O ILE A 451 N LEU A 443 SHEET 1 AA3 3 ILE A 123 THR A 128 0 SHEET 2 AA3 3 LYS A 79 GLU A 86 -1 N GLN A 81 O THR A 128 SHEET 3 AA3 3 MET A 145 THR A 150 -1 O LYS A 149 N SER A 80 SHEET 1 AA4 5 ILE A 261 ARG A 267 0 SHEET 2 AA4 5 THR A 249 GLU A 255 -1 N ALA A 251 O CYS A 265 SHEET 3 AA4 5 TYR A 526 VAL A 532 -1 O VAL A 527 N SER A 254 SHEET 4 AA4 5 LYS A 508 TYR A 519 -1 N GLY A 513 O VAL A 532 SHEET 5 AA4 5 GLY A 495 LEU A 505 -1 N GLY A 499 O TRP A 514 SHEET 1 AA5 2 THR A 320 CYS A 323 0 SHEET 2 AA5 2 GLY A 345 ASN A 348 -1 O GLY A 345 N CYS A 323 SHEET 1 AA6 2 LYS A 326 LYS A 328 0 SHEET 2 AA6 2 ILE A 335 ARG A 337 -1 O LEU A 336 N THR A 327 SHEET 1 AA7 2 THR A 433 PHE A 434 0 SHEET 2 AA7 2 GLU A 461 LEU A 462 -1 O GLU A 461 N PHE A 434 LINK SG CYS A 323 ZN ZN A 605 1555 1555 2.31 LINK SG CYS A 338 ZN ZN A 605 1555 1555 2.21 LINK ND1 HIS A 344 ZN ZN A 605 1555 1555 1.99 LINK SG CYS A 357 ZN ZN A 605 1555 1555 2.22 CISPEP 1 ARG A 267 PRO A 268 0 9.48 CISPEP 2 TYR A 519 PRO A 520 0 -9.74 CRYST1 85.020 114.220 154.630 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011762 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006467 0.00000