HEADER ISOMERASE 15-JUL-21 7RGC TITLE CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM CANDIDATUS TITLE 2 ABSCONDITABACTERIA (SR1) BACTERIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM,TPI,TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATE DIVISION SR1 BACTERIUM RAAC1_SR1_1; SOURCE 3 ORGANISM_TAXID: 1394709; SOURCE 4 GENE: TPIA, P148_SR1C00001G0257; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM, TRIOSEPHOSPHATE ISOMERASE, GLYCOLYSIS, GLUCONEOGENESIS, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.VICKERS,J.COMPTON,D.FRAGA,W.M.PATRICK REVDAT 2 18-OCT-23 7RGC 1 REMARK REVDAT 1 20-JUL-22 7RGC 0 JRNL AUTH C.J.VICKERS,D.FRAGA,J.COMPTON,W.M.PATRICK JRNL TITL STRUCTURE OF SR1TPI - CANDIDATUS ABSCONDITABACTERIA JRNL TITL 2 BACTERIUM TRIOSEPHOSHATE ISOMERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 30681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.470 REMARK 3 FREE R VALUE TEST SET COUNT : 1984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0000 - 5.0500 1.00 2153 148 0.2082 0.2303 REMARK 3 2 5.0500 - 4.0100 1.00 2076 145 0.1675 0.1921 REMARK 3 3 4.0100 - 3.5000 1.00 2082 143 0.1756 0.2308 REMARK 3 4 3.5000 - 3.1800 1.00 2055 142 0.2063 0.2920 REMARK 3 5 3.1800 - 2.9500 1.00 2052 141 0.2302 0.2843 REMARK 3 6 2.9500 - 2.7800 1.00 2063 141 0.2447 0.3196 REMARK 3 7 2.7800 - 2.6400 1.00 2059 143 0.2767 0.3381 REMARK 3 8 2.6400 - 2.5200 1.00 2027 140 0.2908 0.3625 REMARK 3 9 2.5200 - 2.4300 1.00 2065 143 0.2964 0.3577 REMARK 3 10 2.4300 - 2.3400 1.00 2018 139 0.3187 0.3706 REMARK 3 11 2.3400 - 2.2700 1.00 2054 143 0.3396 0.4398 REMARK 3 12 2.2700 - 2.2100 1.00 2048 142 0.3657 0.4124 REMARK 3 13 2.2100 - 2.1500 1.00 2022 139 0.3811 0.4055 REMARK 3 14 2.1500 - 2.0900 0.94 1923 135 0.4050 0.5394 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.286 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.405 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3642 REMARK 3 ANGLE : 0.894 4947 REMARK 3 CHIRALITY : 0.053 580 REMARK 3 PLANARITY : 0.006 643 REMARK 3 DIHEDRAL : 5.784 513 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30881 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 45.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1B9B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3 M DL-MALIC ACID PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 75.89850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.82002 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.47967 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 75.89850 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 43.82002 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.47967 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 75.89850 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 43.82002 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.47967 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 75.89850 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 43.82002 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.47967 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 75.89850 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 43.82002 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.47967 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 75.89850 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 43.82002 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.47967 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 87.64004 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 78.95933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 87.64004 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 78.95933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 87.64004 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 78.95933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 87.64004 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.95933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 87.64004 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 78.95933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 87.64004 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 78.95933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -87.64004 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.47967 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 -87.64004 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 39.47967 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 170 REMARK 465 THR A 171 REMARK 465 GLY A 172 REMARK 465 LYS A 173 REMARK 465 SER A 174 REMARK 465 ALA A 175 REMARK 465 LYS A 243 REMARK 465 ASN A 244 REMARK 465 LYS A 245 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LYS B 243 REMARK 465 ASN B 244 REMARK 465 LYS B 245 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLN A 19 CG CD OE1 NE2 REMARK 470 ASP A 23 CG OD1 OD2 REMARK 470 ASN A 27 CG OD1 ND2 REMARK 470 VAL A 33 CG1 CG2 REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 ASP A 55 CG OD1 OD2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 MET A 107 CG SD CE REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 ASP A 154 CG OD1 OD2 REMARK 470 ILE A 169 CG1 CG2 CD1 REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 GLN B 19 CG CD OE1 NE2 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 GLN B 24 CG CD OE1 NE2 REMARK 470 ASN B 27 CG OD1 ND2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLN B 70 CG CD OE1 NE2 REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 GLN B 117 CG CD OE1 NE2 REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 GLN B 158 CG CD OE1 NE2 REMARK 470 THR B 171 OG1 CG2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 GLU B 194 CG CD OE1 OE2 REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 ASP B 210 CG OD1 OD2 REMARK 470 GLN B 231 CG CD OE1 NE2 REMARK 470 LYS B 232 CG CD CE NZ REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 LYS B 242 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 10 -142.20 53.19 REMARK 500 LYS A 13 124.83 86.56 REMARK 500 ASN A 205 -169.18 -111.37 REMARK 500 SER A 241 -5.47 -59.68 REMARK 500 LYS B 10 -141.92 58.22 REMARK 500 LYS B 13 114.62 95.28 REMARK 500 SER B 14 174.29 -57.45 REMARK 500 MET B 65 143.16 -174.08 REMARK 500 LYS B 173 77.29 -153.57 REMARK 500 SER B 241 1.75 -69.39 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7RGC A 1 245 UNP A0A288DKP7_9BACT DBREF2 7RGC A A0A288DKP7 1 245 DBREF1 7RGC B 1 245 UNP A0A288DKP7_9BACT DBREF2 7RGC B A0A288DKP7 1 245 SEQADV 7RGC SER A -1 UNP A0A288DKP EXPRESSION TAG SEQADV 7RGC HIS A 0 UNP A0A288DKP EXPRESSION TAG SEQADV 7RGC SER B -1 UNP A0A288DKP EXPRESSION TAG SEQADV 7RGC HIS B 0 UNP A0A288DKP EXPRESSION TAG SEQRES 1 A 247 SER HIS MET LYS TYR LEU ILE GLY ALA ASN PHE LYS MET SEQRES 2 A 247 TYR LYS SER HIS LYS ASP LEU GLN GLU TYR PHE ASP GLN SEQRES 3 A 247 PHE VAL ASN ASN TYR ALA CYS PHE VAL ASN ILE ASP LEU SEQRES 4 A 247 MET ILE ALA PRO MET THR VAL CYS LEU GLY THR ALA SER SEQRES 5 A 247 GLU MET THR LYS ASP SER CYS VAL HIS LEU GLY ALA GLN SEQRES 6 A 247 ASN MET HIS TYR GLU ASP GLN GLY ALA TYR THR GLY GLU SEQRES 7 A 247 THR SER PRO LEU ILE LEU LYS GLU LEU GLY ALA GLU TYR SEQRES 8 A 247 VAL ILE ILE GLY HIS SER GLU ARG ARG GLN TYR PHE GLY SEQRES 9 A 247 GLU THR ASN GLN MET ILE ASN LYS LYS LEU LYS SER ALA SEQRES 10 A 247 LEU GLN HIS GLY ILE ARG PRO ILE LEU CYS ILE GLY GLU SEQRES 11 A 247 ASN LEU GLU GLN LYS GLU LEU GLY ILE SER LYS GLU THR SEQRES 12 A 247 LEU LYS ILE GLN LEU ARG GLU ALA LEU GLN GLY ILE ASP SEQRES 13 A 247 THR LEU ASP GLN ILE ASP VAL ALA TYR GLU PRO VAL ARG SEQRES 14 A 247 ALA ILE GLY THR GLY LYS SER ALA THR PRO GLU GLU VAL SEQRES 15 A 247 GLN ASP ILE HIS GLU TYR ILE ARG SER VAL LEU GLY ASN SEQRES 16 A 247 GLU LYS SER ARG ILE ILE TYR GLY GLY SER VAL ASN ASP SEQRES 17 A 247 THR ASN ALA ASP ILE LEU ILE ALA GLN PRO ALA VAL ASN SEQRES 18 A 247 GLY PHE LEU ILE GLY SER ALA SER LEU ASP PRO GLN LYS SEQRES 19 A 247 PHE LEU LYS ILE LEU ASP VAL VAL SER LYS LYS ASN LYS SEQRES 1 B 247 SER HIS MET LYS TYR LEU ILE GLY ALA ASN PHE LYS MET SEQRES 2 B 247 TYR LYS SER HIS LYS ASP LEU GLN GLU TYR PHE ASP GLN SEQRES 3 B 247 PHE VAL ASN ASN TYR ALA CYS PHE VAL ASN ILE ASP LEU SEQRES 4 B 247 MET ILE ALA PRO MET THR VAL CYS LEU GLY THR ALA SER SEQRES 5 B 247 GLU MET THR LYS ASP SER CYS VAL HIS LEU GLY ALA GLN SEQRES 6 B 247 ASN MET HIS TYR GLU ASP GLN GLY ALA TYR THR GLY GLU SEQRES 7 B 247 THR SER PRO LEU ILE LEU LYS GLU LEU GLY ALA GLU TYR SEQRES 8 B 247 VAL ILE ILE GLY HIS SER GLU ARG ARG GLN TYR PHE GLY SEQRES 9 B 247 GLU THR ASN GLN MET ILE ASN LYS LYS LEU LYS SER ALA SEQRES 10 B 247 LEU GLN HIS GLY ILE ARG PRO ILE LEU CYS ILE GLY GLU SEQRES 11 B 247 ASN LEU GLU GLN LYS GLU LEU GLY ILE SER LYS GLU THR SEQRES 12 B 247 LEU LYS ILE GLN LEU ARG GLU ALA LEU GLN GLY ILE ASP SEQRES 13 B 247 THR LEU ASP GLN ILE ASP VAL ALA TYR GLU PRO VAL ARG SEQRES 14 B 247 ALA ILE GLY THR GLY LYS SER ALA THR PRO GLU GLU VAL SEQRES 15 B 247 GLN ASP ILE HIS GLU TYR ILE ARG SER VAL LEU GLY ASN SEQRES 16 B 247 GLU LYS SER ARG ILE ILE TYR GLY GLY SER VAL ASN ASP SEQRES 17 B 247 THR ASN ALA ASP ILE LEU ILE ALA GLN PRO ALA VAL ASN SEQRES 18 B 247 GLY PHE LEU ILE GLY SER ALA SER LEU ASP PRO GLN LYS SEQRES 19 B 247 PHE LEU LYS ILE LEU ASP VAL VAL SER LYS LYS ASN LYS FORMUL 3 HOH *112(H2 O) HELIX 1 AA1 SER A 14 ASN A 27 1 14 HELIX 2 AA2 MET A 42 VAL A 44 5 3 HELIX 3 AA3 CYS A 45 LYS A 54 1 10 HELIX 4 AA4 SER A 78 GLY A 86 1 9 HELIX 5 AA5 HIS A 94 PHE A 101 1 8 HELIX 6 AA6 THR A 104 HIS A 118 1 15 HELIX 7 AA7 ASN A 129 GLY A 136 1 8 HELIX 8 AA8 ILE A 137 GLN A 151 1 15 HELIX 9 AA9 THR A 155 ILE A 159 5 5 HELIX 10 AB1 PRO A 177 GLY A 192 1 16 HELIX 11 AB2 ASN A 208 ALA A 214 1 7 HELIX 12 AB3 GLY A 224 LEU A 228 5 5 HELIX 13 AB4 ASP A 229 SER A 241 1 13 HELIX 14 AB5 SER B 14 ASN B 27 1 14 HELIX 15 AB6 MET B 42 VAL B 44 5 3 HELIX 16 AB7 CYS B 45 LYS B 54 1 10 HELIX 17 AB8 SER B 78 LEU B 85 1 8 HELIX 18 AB9 HIS B 94 PHE B 101 1 8 HELIX 19 AC1 THR B 104 HIS B 118 1 15 HELIX 20 AC2 ASN B 129 LEU B 135 1 7 HELIX 21 AC3 ILE B 137 GLN B 151 1 15 HELIX 22 AC4 THR B 155 ILE B 159 5 5 HELIX 23 AC5 THR B 176 GLY B 192 1 17 HELIX 24 AC6 ASN B 208 GLN B 215 1 8 HELIX 25 AC7 GLY B 224 LEU B 228 5 5 HELIX 26 AC8 ASP B 229 SER B 241 1 13 SHEET 1 AA1 9 TYR A 3 ASN A 8 0 SHEET 2 AA1 9 ILE A 35 ALA A 40 1 O ASP A 36 N TYR A 3 SHEET 3 AA1 9 HIS A 59 ALA A 62 1 O GLY A 61 N ILE A 39 SHEET 4 AA1 9 ALA A 87 ILE A 92 1 O ILE A 91 N ALA A 62 SHEET 5 AA1 9 ARG A 121 ILE A 126 1 O ARG A 121 N GLU A 88 SHEET 6 AA1 9 ASP A 160 TYR A 163 1 O ASP A 160 N LEU A 124 SHEET 7 AA1 9 ILE A 198 TYR A 200 1 O ILE A 199 N VAL A 161 SHEET 8 AA1 9 GLY A 220 ILE A 223 1 O GLY A 220 N TYR A 200 SHEET 9 AA1 9 TYR A 3 ASN A 8 1 N GLY A 6 O ILE A 223 SHEET 1 AA2 9 TYR B 3 ASN B 8 0 SHEET 2 AA2 9 ILE B 35 ALA B 40 1 O ASP B 36 N TYR B 3 SHEET 3 AA2 9 HIS B 59 ALA B 62 1 O HIS B 59 N LEU B 37 SHEET 4 AA2 9 ALA B 87 ILE B 92 1 O ILE B 91 N ALA B 62 SHEET 5 AA2 9 ARG B 121 ILE B 126 1 O ILE B 123 N VAL B 90 SHEET 6 AA2 9 ASP B 160 TYR B 163 1 O ALA B 162 N LEU B 124 SHEET 7 AA2 9 ILE B 198 TYR B 200 1 O ILE B 199 N VAL B 161 SHEET 8 AA2 9 GLY B 220 ILE B 223 1 O GLY B 220 N TYR B 200 SHEET 9 AA2 9 TYR B 3 ASN B 8 1 N ASN B 8 O ILE B 223 SSBOND 1 CYS A 31 CYS A 57 1555 1555 2.04 SSBOND 2 CYS B 31 CYS B 57 1555 1555 2.05 CRYST1 151.797 151.797 118.439 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006588 0.003803 0.000000 0.00000 SCALE2 0.000000 0.007607 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008443 0.00000