HEADER SIGNALING PROTEIN 21-JUL-21 7RJL TITLE CRYSTAL STRUCTURE OF HUMAN BROMODOMAIN CONTAINING PROTEIN 3 (BRD3) IN TITLE 2 COMPLEX WITH SHMT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 24-144; COMPND 5 SYNONYM: RING3-LIKE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE, CYTOSOLIC; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 270-275; COMPND 11 SYNONYM: SHMT,GLYCINE HYDROXYMETHYLTRANSFERASE,SERINE METHYLASE; COMPND 12 EC: 2.1.2.1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD3, KIAA0043, RING3L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PRIL; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS BRD3, SHMT, ACETYLLYSINE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.FEDOROV,K.ISLAM,A.GHOSH REVDAT 4 15-NOV-23 7RJL 1 ATOM REVDAT 3 18-OCT-23 7RJL 1 JRNL REVDAT 2 24-AUG-22 7RJL 1 JRNL REVDAT 1 03-AUG-22 7RJL 0 JRNL AUTH S.WAGNER,E.FEDOROV,B.SUDHAMALLA,H.N.JNAWALI,R.DEBIEC, JRNL AUTH 2 A.GHOSH,K.ISLAM JRNL TITL UNCOVERING THE BROMODOMAIN INTERACTOME USING SITE-SPECIFIC JRNL TITL 2 AZIDE-ACETYLLYSINE PHOTOCHEMISTRY, PROTEOMIC PROFILING AND JRNL TITL 3 STRUCTURAL CHARACTERIZATION JRNL REF BIORXIV 2021 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2021.07.28.453719 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3940 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 43040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7900 - 3.7000 0.99 2940 135 0.1545 0.1926 REMARK 3 2 3.7000 - 2.9400 0.99 2798 144 0.1535 0.1890 REMARK 3 3 2.9400 - 2.5600 1.00 2756 147 0.1504 0.1587 REMARK 3 4 2.5600 - 2.3300 1.00 2759 144 0.1475 0.1787 REMARK 3 5 2.3300 - 2.1600 1.00 2725 171 0.1392 0.1531 REMARK 3 6 2.1600 - 2.0400 1.00 2710 145 0.1476 0.1732 REMARK 3 7 2.0400 - 1.9300 1.00 2741 136 0.1657 0.1942 REMARK 3 8 1.9300 - 1.8500 1.00 2725 143 0.1587 0.1773 REMARK 3 9 1.8500 - 1.7800 1.00 2718 137 0.1612 0.1710 REMARK 3 10 1.7800 - 1.7200 1.00 2718 135 0.1676 0.1896 REMARK 3 11 1.7200 - 1.6600 1.00 2705 131 0.1762 0.2609 REMARK 3 12 1.6600 - 1.6200 1.00 2704 149 0.1846 0.2211 REMARK 3 13 1.6200 - 1.5700 1.00 2677 167 0.1863 0.2100 REMARK 3 14 1.5700 - 1.5400 1.00 2721 150 0.1964 0.2230 REMARK 3 15 1.5400 - 1.5000 0.92 2482 127 0.2226 0.2827 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 24:37) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0263 -2.0173 18.7234 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.1266 REMARK 3 T33: 0.0871 T12: -0.0230 REMARK 3 T13: 0.0095 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 5.4838 L22: 3.2017 REMARK 3 L33: 5.4500 L12: 1.6689 REMARK 3 L13: 0.0301 L23: 2.3000 REMARK 3 S TENSOR REMARK 3 S11: -0.1736 S12: 0.1359 S13: 0.0728 REMARK 3 S21: -0.1613 S22: 0.0217 S23: 0.2827 REMARK 3 S31: 0.1014 S32: -0.1715 S33: 0.1262 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 38:53) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1488 -6.7550 23.8506 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.1646 REMARK 3 T33: 0.1346 T12: 0.0432 REMARK 3 T13: -0.0211 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 4.6210 L22: 3.8603 REMARK 3 L33: 4.3972 L12: 0.8600 REMARK 3 L13: 2.5446 L23: 2.1086 REMARK 3 S TENSOR REMARK 3 S11: 0.2087 S12: -0.0079 S13: -0.2237 REMARK 3 S21: 0.3754 S22: -0.0057 S23: -0.2978 REMARK 3 S31: 0.5439 S32: 0.1899 S33: -0.2147 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 54:67) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8577 9.4162 29.9489 REMARK 3 T TENSOR REMARK 3 T11: 0.2266 T22: 0.2424 REMARK 3 T33: 0.1643 T12: 0.0393 REMARK 3 T13: -0.0847 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 2.0434 L22: 5.1610 REMARK 3 L33: 1.8614 L12: -0.7193 REMARK 3 L13: 0.2968 L23: -1.0419 REMARK 3 S TENSOR REMARK 3 S11: -0.1841 S12: -0.4724 S13: 0.0672 REMARK 3 S21: 0.8312 S22: 0.2318 S23: -0.4857 REMARK 3 S31: 0.1290 S32: -0.0500 S33: -0.0866 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 68:116) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1508 7.4322 19.8816 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.1395 REMARK 3 T33: 0.1142 T12: 0.0202 REMARK 3 T13: -0.0095 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.6208 L22: 3.2500 REMARK 3 L33: 0.7228 L12: 1.0829 REMARK 3 L13: -0.0186 L23: -0.0485 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: -0.0597 S13: 0.0813 REMARK 3 S21: 0.0687 S22: 0.0202 S23: -0.0846 REMARK 3 S31: 0.0392 S32: 0.0211 S33: 0.0122 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 117:136) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3587 5.1974 19.4460 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.2569 REMARK 3 T33: 0.2585 T12: 0.0496 REMARK 3 T13: -0.0046 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 5.2802 L22: 7.5445 REMARK 3 L33: 2.5569 L12: 1.1190 REMARK 3 L13: 0.9461 L23: 1.1485 REMARK 3 S TENSOR REMARK 3 S11: -0.1241 S12: 0.0575 S13: 0.0740 REMARK 3 S21: 0.1311 S22: 0.1342 S23: -0.8821 REMARK 3 S31: 0.1070 S32: 0.4230 S33: 0.0053 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 137:143) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2181 -11.9879 12.5799 REMARK 3 T TENSOR REMARK 3 T11: 0.3200 T22: 0.2982 REMARK 3 T33: 0.3964 T12: 0.0323 REMARK 3 T13: -0.0338 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 2.1779 L22: 9.3682 REMARK 3 L33: 3.0744 L12: 3.3920 REMARK 3 L13: -1.8290 L23: -0.3419 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: 0.5629 S13: -0.4562 REMARK 3 S21: -0.4467 S22: 0.2901 S23: 0.0922 REMARK 3 S31: 0.2867 S32: -0.2170 S33: -0.3154 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 32:52) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3412 22.9434 1.0602 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.1360 REMARK 3 T33: 0.1025 T12: 0.0128 REMARK 3 T13: 0.0084 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 5.4832 L22: 6.3795 REMARK 3 L33: 4.5380 L12: -0.6046 REMARK 3 L13: -1.5386 L23: 2.7356 REMARK 3 S TENSOR REMARK 3 S11: 0.3085 S12: -0.0137 S13: 0.5417 REMARK 3 S21: -0.4463 S22: -0.1320 S23: -0.0737 REMARK 3 S31: -0.5318 S32: -0.0700 S33: -0.1674 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 53:78) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7676 0.1453 -2.1102 REMARK 3 T TENSOR REMARK 3 T11: 0.1733 T22: 0.1274 REMARK 3 T33: 0.1754 T12: 0.0157 REMARK 3 T13: -0.0092 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 6.1381 L22: 3.3621 REMARK 3 L33: 2.3156 L12: 2.4853 REMARK 3 L13: -1.5473 L23: -1.5459 REMARK 3 S TENSOR REMARK 3 S11: -0.1156 S12: 0.2739 S13: -0.4403 REMARK 3 S21: -0.2624 S22: 0.1132 S23: 0.1634 REMARK 3 S31: 0.2516 S32: -0.2219 S33: -0.0056 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 79:109) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6594 15.2592 3.8326 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.1355 REMARK 3 T33: 0.0854 T12: -0.0062 REMARK 3 T13: 0.0077 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.7028 L22: 8.2424 REMARK 3 L33: 0.7480 L12: -2.9375 REMARK 3 L13: -0.0300 L23: 1.1640 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.0327 S13: -0.0364 REMARK 3 S21: 0.0760 S22: -0.0564 S23: 0.1019 REMARK 3 S31: -0.0318 S32: 0.0032 S33: 0.0589 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 110:121) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7005 -3.0802 5.8408 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.1336 REMARK 3 T33: 0.1505 T12: 0.0178 REMARK 3 T13: 0.0195 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 5.6956 L22: 2.5754 REMARK 3 L33: 6.1567 L12: -0.0429 REMARK 3 L13: -1.8655 L23: -0.1936 REMARK 3 S TENSOR REMARK 3 S11: -0.0606 S12: -0.0165 S13: -0.4204 REMARK 3 S21: -0.1565 S22: 0.0339 S23: -0.0964 REMARK 3 S31: 0.2662 S32: 0.2759 S33: 0.0605 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 122:134) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8147 6.3418 5.1693 REMARK 3 T TENSOR REMARK 3 T11: 0.1592 T22: 0.1796 REMARK 3 T33: 0.1507 T12: -0.0089 REMARK 3 T13: 0.0027 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.2254 L22: 8.9990 REMARK 3 L33: 4.1793 L12: 0.4358 REMARK 3 L13: -0.6858 L23: 3.6763 REMARK 3 S TENSOR REMARK 3 S11: -0.1897 S12: 0.0909 S13: -0.0104 REMARK 3 S21: 0.0754 S22: 0.1885 S23: -0.1750 REMARK 3 S31: 0.1330 S32: 0.2371 S33: 0.0130 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 135:144) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7414 24.8342 10.3534 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.1841 REMARK 3 T33: 0.2246 T12: -0.0267 REMARK 3 T13: -0.0056 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 6.5931 L22: 4.1016 REMARK 3 L33: 3.8396 L12: -4.8275 REMARK 3 L13: -2.2583 L23: 2.9722 REMARK 3 S TENSOR REMARK 3 S11: 0.2251 S12: -0.0606 S13: 0.2281 REMARK 3 S21: -0.1537 S22: -0.0088 S23: -0.4532 REMARK 3 S31: -0.2490 S32: -0.0505 S33: -0.1471 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43125 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.70200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6QJU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% V/V TACSIMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.77500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.81700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.78600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.81700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.77500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.78600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 144 REMARK 465 SER B 22 REMARK 465 MET B 23 REMARK 465 PRO B 24 REMARK 465 GLU B 25 REMARK 465 VAL B 26 REMARK 465 SER B 27 REMARK 465 ASN B 28 REMARK 465 PRO B 29 REMARK 465 SER B 30 REMARK 465 LYS B 31 REMARK 465 ARG D 270 REMARK 465 GLY D 272 REMARK 465 VAL D 273 REMARK 465 SER D 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 LYS B 117 CE NZ REMARK 470 ALY D 271 CA N C O REMARK 470 ALY D 274 CB CA N C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD22 ASN B 92 HG13 ILE B 132 4455 0.80 REMARK 500 HD22 ASN B 92 CG1 ILE B 132 4455 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 110.72 -163.21 REMARK 500 LYS A 52 37.44 -90.39 REMARK 500 LYS A 52 34.54 -88.17 REMARK 500 ASN A 79 73.11 -119.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 7RJL A 24 144 UNP Q15059 BRD3_HUMAN 24 144 DBREF 7RJL B 24 144 UNP Q15059 BRD3_HUMAN 24 144 DBREF 7RJL C 270 275 UNP P34896 GLYC_HUMAN 270 275 DBREF 7RJL D 270 275 UNP P34896 GLYC_HUMAN 270 275 SEQADV 7RJL SER A 22 UNP Q15059 EXPRESSION TAG SEQADV 7RJL MET A 23 UNP Q15059 EXPRESSION TAG SEQADV 7RJL SER B 22 UNP Q15059 EXPRESSION TAG SEQADV 7RJL MET B 23 UNP Q15059 EXPRESSION TAG SEQRES 1 A 123 SER MET PRO GLU VAL SER ASN PRO SER LYS PRO GLY ARG SEQRES 2 A 123 LYS THR ASN GLN LEU GLN TYR MET GLN ASN VAL VAL VAL SEQRES 3 A 123 LYS THR LEU TRP LYS HIS GLN PHE ALA TRP PRO PHE TYR SEQRES 4 A 123 GLN PRO VAL ASP ALA ILE LYS LEU ASN LEU PRO ASP TYR SEQRES 5 A 123 HIS LYS ILE ILE LYS ASN PRO MET ASP MET GLY THR ILE SEQRES 6 A 123 LYS LYS ARG LEU GLU ASN ASN TYR TYR TRP SER ALA SER SEQRES 7 A 123 GLU CYS MET GLN ASP PHE ASN THR MET PHE THR ASN CYS SEQRES 8 A 123 TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL LEU MET SEQRES 9 A 123 ALA GLN ALA LEU GLU LYS ILE PHE LEU GLN LYS VAL ALA SEQRES 10 A 123 GLN MET PRO GLN GLU GLU SEQRES 1 B 123 SER MET PRO GLU VAL SER ASN PRO SER LYS PRO GLY ARG SEQRES 2 B 123 LYS THR ASN GLN LEU GLN TYR MET GLN ASN VAL VAL VAL SEQRES 3 B 123 LYS THR LEU TRP LYS HIS GLN PHE ALA TRP PRO PHE TYR SEQRES 4 B 123 GLN PRO VAL ASP ALA ILE LYS LEU ASN LEU PRO ASP TYR SEQRES 5 B 123 HIS LYS ILE ILE LYS ASN PRO MET ASP MET GLY THR ILE SEQRES 6 B 123 LYS LYS ARG LEU GLU ASN ASN TYR TYR TRP SER ALA SER SEQRES 7 B 123 GLU CYS MET GLN ASP PHE ASN THR MET PHE THR ASN CYS SEQRES 8 B 123 TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL LEU MET SEQRES 9 B 123 ALA GLN ALA LEU GLU LYS ILE PHE LEU GLN LYS VAL ALA SEQRES 10 B 123 GLN MET PRO GLN GLU GLU SEQRES 1 C 6 ARG ALY GLY VAL ALY SER SEQRES 1 D 6 ARG ALY GLY VAL ALY SER MODRES 7RJL ALY C 271 LYS MODIFIED RESIDUE MODRES 7RJL ALY C 274 LYS MODIFIED RESIDUE MODRES 7RJL ALY D 271 LYS MODIFIED RESIDUE MODRES 7RJL ALY D 274 LYS MODIFIED RESIDUE HET ALY C 271 26 HET ALY C 274 25 HET ALY D 271 18 HET ALY D 274 30 HET EDO A 201 10 HET EDO A 202 10 HET EDO A 203 10 HET EDO A 204 10 HET EDO A 205 20 HET EDO A 206 10 HET GOL A 207 11 HET EDO B 201 10 HET EDO B 202 10 HETNAM ALY N(6)-ACETYLLYSINE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ALY 4(C8 H16 N2 O3) FORMUL 5 EDO 8(C2 H6 O2) FORMUL 11 GOL C3 H8 O3 FORMUL 14 HOH *193(H2 O) HELIX 1 AA1 THR A 36 VAL A 45 1 10 HELIX 2 AA2 VAL A 45 LYS A 52 1 8 HELIX 3 AA3 ALA A 56 TYR A 60 5 5 HELIX 4 AA4 ASP A 72 ILE A 77 1 6 HELIX 5 AA5 ASP A 82 ASN A 92 1 11 HELIX 6 AA6 SER A 97 ASN A 116 1 20 HELIX 7 AA7 ASP A 120 GLN A 139 1 20 HELIX 8 AA8 THR B 36 VAL B 45 1 10 HELIX 9 AA9 VAL B 45 HIS B 53 1 9 HELIX 10 AB1 ALA B 56 TYR B 60 5 5 HELIX 11 AB2 ASP B 72 ILE B 77 1 6 HELIX 12 AB3 ASP B 82 ASN B 92 1 11 HELIX 13 AB4 SER B 97 ASN B 116 1 20 HELIX 14 AB5 ASP B 120 ALA B 138 1 19 LINK C ARG C 270 N ALY C 271 1555 1555 1.35 LINK C ALY C 271 N GLY C 272 1555 1555 1.33 LINK C VAL C 273 N ALY C 274 1555 1555 1.33 LINK C ALY C 274 N SER C 275 1555 1555 1.33 CRYST1 51.550 61.572 83.634 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019399 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011957 0.00000