HEADER TRANSPORT PROTEIN 25-JUL-21 7RLK TITLE WALLABY TTR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: PREALBUMIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACROPUS EUGENII; SOURCE 3 ORGANISM_COMMON: TAMMAR WALLABY, NOTAMACROPUS EUGENII; SOURCE 4 ORGANISM_TAXID: 9315; SOURCE 5 GENE: TTR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSTHYRETIN, THYROXINE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.G.D-SOUZA,S.J.RICHARDSON REVDAT 2 18-OCT-23 7RLK 1 REMARK REVDAT 1 03-AUG-22 7RLK 0 JRNL AUTH D.G.D-SOUZA,S.J.RICHARDSON JRNL TITL STRUCTURAL AND AMYLOIDOGENIC COMPARISONS OF HUMAN AND JRNL TITL 2 WALLABY TRANSTHYRETINS: IMPLICATIONS FOR AMYLOIDOSIS? JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2400 - 5.5900 1.00 2912 131 0.1907 0.2005 REMARK 3 2 5.5900 - 4.4400 1.00 2791 132 0.1389 0.1544 REMARK 3 3 4.4400 - 3.8800 1.00 2759 135 0.1593 0.1976 REMARK 3 4 3.8800 - 3.5200 1.00 2716 162 0.1802 0.1993 REMARK 3 5 3.5200 - 3.2700 1.00 2718 136 0.2075 0.2702 REMARK 3 6 3.2700 - 3.0800 1.00 2729 133 0.2374 0.2676 REMARK 3 7 3.0800 - 2.9200 1.00 2694 160 0.2485 0.2706 REMARK 3 8 2.9200 - 2.8000 1.00 2678 149 0.2491 0.2964 REMARK 3 9 2.8000 - 2.6900 1.00 2743 121 0.2416 0.2922 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.322 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.393 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 5574 REMARK 3 ANGLE : 1.759 7592 REMARK 3 CHIRALITY : 0.113 855 REMARK 3 PLANARITY : 0.008 969 REMARK 3 DIHEDRAL : 16.404 1935 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 10:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.065 3.919 -46.149 REMARK 3 T TENSOR REMARK 3 T11: 0.3717 T22: 0.1915 REMARK 3 T33: 0.5117 T12: 0.0729 REMARK 3 T13: -0.0127 T23: -0.0604 REMARK 3 L TENSOR REMARK 3 L11: 4.2377 L22: 1.8276 REMARK 3 L33: 3.8416 L12: -0.9603 REMARK 3 L13: 1.8736 L23: 0.5161 REMARK 3 S TENSOR REMARK 3 S11: -0.2444 S12: -0.2151 S13: 0.9509 REMARK 3 S21: 0.0517 S22: -0.0746 S23: 0.0705 REMARK 3 S31: -0.7632 S32: -0.5206 S33: -1.0524 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 10:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.894 -13.861 -42.803 REMARK 3 T TENSOR REMARK 3 T11: 0.2657 T22: 0.4312 REMARK 3 T33: 0.2984 T12: -0.1466 REMARK 3 T13: 0.0320 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 4.5094 L22: 2.1401 REMARK 3 L33: 3.7332 L12: -1.1293 REMARK 3 L13: 1.6775 L23: -0.1160 REMARK 3 S TENSOR REMARK 3 S11: 0.1165 S12: -0.3747 S13: -0.1721 REMARK 3 S21: 0.0110 S22: -0.1660 S23: 0.2778 REMARK 3 S31: 0.5348 S32: -0.9386 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND RESID 10:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.417 -5.660 -35.321 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.3662 REMARK 3 T33: 0.3856 T12: -0.0742 REMARK 3 T13: -0.0334 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 5.1821 L22: 1.8672 REMARK 3 L33: 4.0735 L12: -0.2459 REMARK 3 L13: 0.6376 L23: -0.5339 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.1477 S13: 0.5826 REMARK 3 S21: 0.1187 S22: -0.0918 S23: -0.3198 REMARK 3 S31: -0.2658 S32: 0.7266 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN D AND RESID 10:126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.093 -24.563 -37.836 REMARK 3 T TENSOR REMARK 3 T11: 0.5160 T22: 0.1476 REMARK 3 T33: 0.3480 T12: 0.0755 REMARK 3 T13: -0.0809 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 3.2750 L22: 2.5620 REMARK 3 L33: 4.2837 L12: 0.6928 REMARK 3 L13: -0.0068 L23: -1.2392 REMARK 3 S TENSOR REMARK 3 S11: 0.1921 S12: -0.1292 S13: -0.6700 REMARK 3 S21: 0.1662 S22: -0.1472 S23: -0.3798 REMARK 3 S31: 0.9310 S32: 0.3225 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN E AND RESID 10:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.597 13.986 -8.935 REMARK 3 T TENSOR REMARK 3 T11: 0.4773 T22: 0.2945 REMARK 3 T33: 0.3800 T12: -0.2182 REMARK 3 T13: -0.1103 T23: 0.1726 REMARK 3 L TENSOR REMARK 3 L11: 3.5144 L22: 2.8129 REMARK 3 L33: 5.5804 L12: -0.3622 REMARK 3 L13: 0.4508 L23: -0.8716 REMARK 3 S TENSOR REMARK 3 S11: -0.1948 S12: 0.0205 S13: 0.5697 REMARK 3 S21: -0.2074 S22: 0.2488 S23: 0.1655 REMARK 3 S31: -1.1804 S32: 0.4708 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN F AND RESID 10:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.395 -4.945 -15.792 REMARK 3 T TENSOR REMARK 3 T11: 0.2763 T22: 0.3759 REMARK 3 T33: 0.2680 T12: -0.1040 REMARK 3 T13: 0.0124 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.7902 L22: 1.4191 REMARK 3 L33: 7.5988 L12: -0.9026 REMARK 3 L13: -0.8955 L23: 0.2189 REMARK 3 S TENSOR REMARK 3 S11: -0.2472 S12: 0.5116 S13: -0.3485 REMARK 3 S21: -0.2534 S22: 0.0794 S23: 0.1081 REMARK 3 S31: 0.4593 S32: 0.2960 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000254754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28992 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 46.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3U2I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM TRIS, 150 MM NACL PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.64050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 122.64050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.25800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.07600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.25800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.07600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 122.64050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.25800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.07600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 122.64050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.25800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.07600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH F 311 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 313 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 125 REMARK 465 THR A 126 REMARK 465 ALA B 100 REMARK 465 GLY B 101 REMARK 465 PRO B 125 REMARK 465 THR B 126 REMARK 465 PRO C 125 REMARK 465 THR C 126 REMARK 465 PRO E 125 REMARK 465 THR E 126 REMARK 465 PRO F 125 REMARK 465 THR F 126 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ASP C 29 CG OD1 OD2 REMARK 470 GLU F 37 CG CD OE1 OE2 REMARK 470 GLN F 39 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP F 61 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 50 -169.05 -79.34 REMARK 500 GLU A 57 -105.48 73.70 REMARK 500 LEU A 58 -72.54 76.43 REMARK 500 PHE A 64 -115.22 -75.48 REMARK 500 GLU B 57 64.59 75.07 REMARK 500 ASN C 50 -169.48 -79.55 REMARK 500 GLU C 57 64.28 77.07 REMARK 500 ASN D 50 -169.84 -79.35 REMARK 500 HIS D 56 -79.92 -104.81 REMARK 500 PRO D 125 44.31 -58.75 REMARK 500 ASN E 50 -169.35 -78.20 REMARK 500 HIS E 56 -79.40 -105.61 REMARK 500 GLU F 57 64.36 83.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F 313 DISTANCE = 6.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD2 REMARK 620 2 HIS A 102 NE2 111.4 REMARK 620 3 HIS A 104 NE2 100.6 103.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 61 OD2 REMARK 620 2 HIS C 102 NE2 111.7 REMARK 620 3 HIS C 104 NE2 102.7 100.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 61 OD1 REMARK 620 2 ASP D 61 OD2 55.7 REMARK 620 3 HIS D 102 NE2 74.4 119.4 REMARK 620 4 HIS D 104 NE2 100.3 113.6 106.5 REMARK 620 5 GLU E 42 OE1 63.2 118.0 45.1 66.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 61 OD2 REMARK 620 2 HIS E 102 NE2 97.4 REMARK 620 3 HIS E 104 NE2 92.6 92.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 61 OD2 REMARK 620 2 HIS F 102 NE2 101.3 REMARK 620 3 HIS F 104 NE2 91.1 98.5 REMARK 620 N 1 2 DBREF 7RLK A 10 126 UNP P42204 TTHY_MACEU 32 148 DBREF 7RLK B 10 126 UNP P42204 TTHY_MACEU 32 148 DBREF 7RLK C 10 126 UNP P42204 TTHY_MACEU 32 148 DBREF 7RLK D 10 126 UNP P42204 TTHY_MACEU 32 148 DBREF 7RLK E 10 126 UNP P42204 TTHY_MACEU 32 148 DBREF 7RLK F 10 126 UNP P42204 TTHY_MACEU 32 148 SEQRES 1 A 117 CYS PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SEQRES 2 A 117 ARG PRO ALA VAL ASN VAL ASP VAL LYS VAL PHE LYS LYS SEQRES 3 A 117 THR GLU GLU GLN THR TRP GLU LEU PHE ALA ALA GLY LYS SEQRES 4 A 117 THR ASN ASP ASN GLY GLU ILE HIS GLU LEU THR THR ASP SEQRES 5 A 117 ASP LYS PHE GLY GLU GLY LEU TYR LYS VAL GLU PHE ASP SEQRES 6 A 117 THR ILE SER TYR TRP LYS ALA LEU GLY VAL SER PRO PHE SEQRES 7 A 117 HIS GLU TYR ALA ASP VAL VAL PHE THR ALA ASN ASP ALA SEQRES 8 A 117 GLY HIS ARG HIS TYR THR ILE ALA ALA LEU LEU SER PRO SEQRES 9 A 117 TYR SER PHE SER THR THR ALA ILE VAL SER ASN PRO THR SEQRES 1 B 117 CYS PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SEQRES 2 B 117 ARG PRO ALA VAL ASN VAL ASP VAL LYS VAL PHE LYS LYS SEQRES 3 B 117 THR GLU GLU GLN THR TRP GLU LEU PHE ALA ALA GLY LYS SEQRES 4 B 117 THR ASN ASP ASN GLY GLU ILE HIS GLU LEU THR THR ASP SEQRES 5 B 117 ASP LYS PHE GLY GLU GLY LEU TYR LYS VAL GLU PHE ASP SEQRES 6 B 117 THR ILE SER TYR TRP LYS ALA LEU GLY VAL SER PRO PHE SEQRES 7 B 117 HIS GLU TYR ALA ASP VAL VAL PHE THR ALA ASN ASP ALA SEQRES 8 B 117 GLY HIS ARG HIS TYR THR ILE ALA ALA LEU LEU SER PRO SEQRES 9 B 117 TYR SER PHE SER THR THR ALA ILE VAL SER ASN PRO THR SEQRES 1 C 117 CYS PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SEQRES 2 C 117 ARG PRO ALA VAL ASN VAL ASP VAL LYS VAL PHE LYS LYS SEQRES 3 C 117 THR GLU GLU GLN THR TRP GLU LEU PHE ALA ALA GLY LYS SEQRES 4 C 117 THR ASN ASP ASN GLY GLU ILE HIS GLU LEU THR THR ASP SEQRES 5 C 117 ASP LYS PHE GLY GLU GLY LEU TYR LYS VAL GLU PHE ASP SEQRES 6 C 117 THR ILE SER TYR TRP LYS ALA LEU GLY VAL SER PRO PHE SEQRES 7 C 117 HIS GLU TYR ALA ASP VAL VAL PHE THR ALA ASN ASP ALA SEQRES 8 C 117 GLY HIS ARG HIS TYR THR ILE ALA ALA LEU LEU SER PRO SEQRES 9 C 117 TYR SER PHE SER THR THR ALA ILE VAL SER ASN PRO THR SEQRES 1 D 117 CYS PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SEQRES 2 D 117 ARG PRO ALA VAL ASN VAL ASP VAL LYS VAL PHE LYS LYS SEQRES 3 D 117 THR GLU GLU GLN THR TRP GLU LEU PHE ALA ALA GLY LYS SEQRES 4 D 117 THR ASN ASP ASN GLY GLU ILE HIS GLU LEU THR THR ASP SEQRES 5 D 117 ASP LYS PHE GLY GLU GLY LEU TYR LYS VAL GLU PHE ASP SEQRES 6 D 117 THR ILE SER TYR TRP LYS ALA LEU GLY VAL SER PRO PHE SEQRES 7 D 117 HIS GLU TYR ALA ASP VAL VAL PHE THR ALA ASN ASP ALA SEQRES 8 D 117 GLY HIS ARG HIS TYR THR ILE ALA ALA LEU LEU SER PRO SEQRES 9 D 117 TYR SER PHE SER THR THR ALA ILE VAL SER ASN PRO THR SEQRES 1 E 117 CYS PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SEQRES 2 E 117 ARG PRO ALA VAL ASN VAL ASP VAL LYS VAL PHE LYS LYS SEQRES 3 E 117 THR GLU GLU GLN THR TRP GLU LEU PHE ALA ALA GLY LYS SEQRES 4 E 117 THR ASN ASP ASN GLY GLU ILE HIS GLU LEU THR THR ASP SEQRES 5 E 117 ASP LYS PHE GLY GLU GLY LEU TYR LYS VAL GLU PHE ASP SEQRES 6 E 117 THR ILE SER TYR TRP LYS ALA LEU GLY VAL SER PRO PHE SEQRES 7 E 117 HIS GLU TYR ALA ASP VAL VAL PHE THR ALA ASN ASP ALA SEQRES 8 E 117 GLY HIS ARG HIS TYR THR ILE ALA ALA LEU LEU SER PRO SEQRES 9 E 117 TYR SER PHE SER THR THR ALA ILE VAL SER ASN PRO THR SEQRES 1 F 117 CYS PRO LEU MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SEQRES 2 F 117 ARG PRO ALA VAL ASN VAL ASP VAL LYS VAL PHE LYS LYS SEQRES 3 F 117 THR GLU GLU GLN THR TRP GLU LEU PHE ALA ALA GLY LYS SEQRES 4 F 117 THR ASN ASP ASN GLY GLU ILE HIS GLU LEU THR THR ASP SEQRES 5 F 117 ASP LYS PHE GLY GLU GLY LEU TYR LYS VAL GLU PHE ASP SEQRES 6 F 117 THR ILE SER TYR TRP LYS ALA LEU GLY VAL SER PRO PHE SEQRES 7 F 117 HIS GLU TYR ALA ASP VAL VAL PHE THR ALA ASN ASP ALA SEQRES 8 F 117 GLY HIS ARG HIS TYR THR ILE ALA ALA LEU LEU SER PRO SEQRES 9 F 117 TYR SER PHE SER THR THR ALA ILE VAL SER ASN PRO THR HET ZN A 201 1 HET ZN A 202 1 HET ZN C 201 1 HET ZN C 202 1 HET ZN D 201 1 HET ZN E 201 1 HET ZN E 202 1 HET ZN F 201 1 HETNAM ZN ZINC ION FORMUL 7 ZN 8(ZN 2+) FORMUL 15 HOH *54(H2 O) HELIX 1 AA1 ASP A 74 ALA A 81 1 8 HELIX 2 AA2 ASP B 74 ALA B 81 1 8 HELIX 3 AA3 ASP C 74 ALA C 81 1 8 HELIX 4 AA4 ASP D 74 ALA D 81 1 8 HELIX 5 AA5 ASP E 74 ALA E 81 1 8 HELIX 6 AA6 ASP F 74 ALA F 81 1 8 SHEET 1 AA1 8 ARG A 23 PRO A 24 0 SHEET 2 AA1 8 LEU A 12 ASP A 18 -1 N ASP A 18 O ARG A 23 SHEET 3 AA1 8 HIS A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 AA1 8 SER A 115 SER A 123 -1 O THR A 119 N ALA A 108 SHEET 5 AA1 8 SER B 115 SER B 123 -1 O THR B 118 N PHE A 116 SHEET 6 AA1 8 HIS B 104 SER B 112 -1 N ALA B 108 O THR B 119 SHEET 7 AA1 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 AA1 8 ARG B 23 PRO B 24 -1 O ARG B 23 N ASP B 18 SHEET 1 AA2 4 TRP A 41 LYS A 48 0 SHEET 2 AA2 4 ASP A 29 LYS A 35 -1 N VAL A 32 O PHE A 44 SHEET 3 AA2 4 GLY A 67 PHE A 73 -1 O GLU A 72 N LYS A 31 SHEET 4 AA2 4 ALA A 91 ALA A 97 -1 O ALA A 97 N GLY A 67 SHEET 1 AA3 4 TRP B 41 LYS B 48 0 SHEET 2 AA3 4 ASP B 29 LYS B 35 -1 N VAL B 32 O PHE B 44 SHEET 3 AA3 4 GLY B 67 PHE B 73 -1 O GLU B 72 N LYS B 31 SHEET 4 AA3 4 ALA B 91 ALA B 97 -1 O ALA B 91 N PHE B 73 SHEET 1 AA4 8 ARG C 23 PRO C 24 0 SHEET 2 AA4 8 LEU C 12 ASP C 18 -1 N ASP C 18 O ARG C 23 SHEET 3 AA4 8 HIS C 104 SER C 112 1 O LEU C 111 N LEU C 17 SHEET 4 AA4 8 SER C 115 SER C 123 -1 O THR C 119 N ALA C 108 SHEET 5 AA4 8 SER D 115 SER D 123 -1 O PHE D 116 N THR C 118 SHEET 6 AA4 8 HIS D 104 SER D 112 -1 N ALA D 108 O THR D 119 SHEET 7 AA4 8 LEU D 12 ASP D 18 1 N LEU D 17 O LEU D 111 SHEET 8 AA4 8 ARG D 23 PRO D 24 -1 O ARG D 23 N ASP D 18 SHEET 1 AA5 8 GLU C 54 ILE C 55 0 SHEET 2 AA5 8 LEU C 12 ASP C 18 -1 N VAL C 14 O ILE C 55 SHEET 3 AA5 8 HIS C 104 SER C 112 1 O LEU C 111 N LEU C 17 SHEET 4 AA5 8 SER C 115 SER C 123 -1 O THR C 119 N ALA C 108 SHEET 5 AA5 8 SER D 115 SER D 123 -1 O PHE D 116 N THR C 118 SHEET 6 AA5 8 HIS D 104 SER D 112 -1 N ALA D 108 O THR D 119 SHEET 7 AA5 8 LEU D 12 ASP D 18 1 N LEU D 17 O LEU D 111 SHEET 8 AA5 8 GLU D 54 ILE D 55 -1 O ILE D 55 N VAL D 14 SHEET 1 AA6 8 TRP C 41 LYS C 48 0 SHEET 2 AA6 8 ASP C 29 LYS C 35 -1 N VAL C 32 O PHE C 44 SHEET 3 AA6 8 GLY C 67 PHE C 73 -1 O GLU C 72 N LYS C 31 SHEET 4 AA6 8 HIS C 88 ALA C 97 -1 O ALA C 91 N PHE C 73 SHEET 5 AA6 8 HIS D 88 ALA D 97 -1 O VAL D 94 N GLU C 89 SHEET 6 AA6 8 GLY D 67 PHE D 73 -1 N GLY D 67 O ALA D 97 SHEET 7 AA6 8 ASP D 29 LYS D 35 -1 N LYS D 31 O GLU D 72 SHEET 8 AA6 8 TRP D 41 LYS D 48 -1 O PHE D 44 N VAL D 32 SHEET 1 AA7 8 ARG E 23 PRO E 24 0 SHEET 2 AA7 8 LEU E 12 ASP E 18 -1 N ASP E 18 O ARG E 23 SHEET 3 AA7 8 HIS E 104 SER E 112 1 O LEU E 111 N LEU E 17 SHEET 4 AA7 8 SER E 115 SER E 123 -1 O THR E 119 N ALA E 108 SHEET 5 AA7 8 SER F 115 SER F 123 -1 O PHE F 116 N THR E 118 SHEET 6 AA7 8 HIS F 104 SER F 112 -1 N ALA F 108 O THR F 119 SHEET 7 AA7 8 LEU F 12 ASP F 18 1 N LEU F 17 O LEU F 111 SHEET 8 AA7 8 ARG F 23 PRO F 24 -1 O ARG F 23 N ASP F 18 SHEET 1 AA8 8 GLU E 54 ILE E 55 0 SHEET 2 AA8 8 LEU E 12 ASP E 18 -1 N VAL E 14 O ILE E 55 SHEET 3 AA8 8 HIS E 104 SER E 112 1 O LEU E 111 N LEU E 17 SHEET 4 AA8 8 SER E 115 SER E 123 -1 O THR E 119 N ALA E 108 SHEET 5 AA8 8 SER F 115 SER F 123 -1 O PHE F 116 N THR E 118 SHEET 6 AA8 8 HIS F 104 SER F 112 -1 N ALA F 108 O THR F 119 SHEET 7 AA8 8 LEU F 12 ASP F 18 1 N LEU F 17 O LEU F 111 SHEET 8 AA8 8 GLU F 54 ILE F 55 -1 O ILE F 55 N VAL F 14 SHEET 1 AA9 8 TRP E 41 LYS E 48 0 SHEET 2 AA9 8 ASP E 29 LYS E 35 -1 N VAL E 32 O PHE E 44 SHEET 3 AA9 8 GLY E 67 PHE E 73 -1 O GLU E 72 N LYS E 31 SHEET 4 AA9 8 HIS E 88 ALA E 97 -1 O ALA E 97 N GLY E 67 SHEET 5 AA9 8 HIS F 88 ALA F 97 -1 O VAL F 94 N GLU E 89 SHEET 6 AA9 8 GLY F 67 PHE F 73 -1 N GLY F 67 O ALA F 97 SHEET 7 AA9 8 ASP F 29 LYS F 35 -1 N LYS F 31 O GLU F 72 SHEET 8 AA9 8 TRP F 41 LYS F 48 -1 O PHE F 44 N VAL F 32 LINK OD2 ASP A 61 ZN ZN A 202 1555 1555 2.23 LINK NE2 HIS A 102 ZN ZN A 202 1555 1555 2.08 LINK NE2 HIS A 104 ZN ZN A 202 1555 1555 2.43 LINK OD2 ASP C 61 ZN ZN C 202 1555 1555 2.13 LINK NE2 HIS C 102 ZN ZN C 202 1555 1555 2.16 LINK NE2 HIS C 104 ZN ZN C 202 1555 1555 2.44 LINK OD1 ASP D 61 ZN ZN D 201 1555 1555 2.43 LINK OD2 ASP D 61 ZN ZN D 201 1555 1555 1.98 LINK NE2 HIS D 102 ZN ZN D 201 1555 1555 2.01 LINK NE2 HIS D 104 ZN ZN D 201 1555 1555 2.32 LINK ZN ZN D 201 OE1 GLU E 42 5555 1555 1.86 LINK OD2 ASP E 61 ZN ZN E 201 1555 1555 2.40 LINK NE2 HIS E 102 ZN ZN E 201 1555 1555 2.34 LINK NE2 HIS E 104 ZN ZN E 201 1555 1555 2.53 LINK OD2 ASP F 61 ZN ZN F 201 1555 1555 2.49 LINK NE2 HIS F 102 ZN ZN F 201 1555 1555 2.09 LINK NE2 HIS F 104 ZN ZN F 201 1555 1555 2.53 CRYST1 66.516 112.152 245.281 90.00 90.00 90.00 C 2 2 21 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015034 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004077 0.00000