HEADER VIRAL PROTEIN 27-JUL-21 7RMM TITLE STRUCTURE OF N74D MUTANT OF DISULFIDE STABILIZED HIV-1 CA HEXAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.BESTER,M.KVARATSKHELIA REVDAT 5 18-OCT-23 7RMM 1 REMARK REVDAT 4 09-NOV-22 7RMM 1 JRNL REVDAT 3 19-OCT-22 7RMM 1 JRNL REVDAT 2 10-AUG-22 7RMM 1 REMARK ATOM REVDAT 1 03-AUG-22 7RMM 0 JRNL AUTH S.M.BESTER,D.ADU-AMPRATWUM,A.S.ANNAMALAI,G.WEI,L.BRIGANTI, JRNL AUTH 2 B.C.MURPHY,R.HANEY,J.R.FUCHS,M.KVARATSKHELIA JRNL TITL STRUCTURAL AND MECHANISTIC BASES OF VIRAL RESISTANCE TO JRNL TITL 2 HIV-1 CAPSID INHIBITOR LENACAPAVIR. JRNL REF MBIO V. 13 80422 2022 JRNL REFN ESSN 2150-7511 JRNL PMID 36190128 JRNL DOI 10.1128/MBIO.01804-22 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 56781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4300 - 5.3500 0.99 2807 142 0.2270 0.2036 REMARK 3 2 5.3400 - 4.2400 1.00 2748 139 0.1835 0.2198 REMARK 3 3 4.2400 - 3.7100 1.00 2723 142 0.1796 0.2065 REMARK 3 4 3.7100 - 3.3700 1.00 2707 155 0.1953 0.2330 REMARK 3 5 3.3700 - 3.1300 1.00 2722 117 0.2115 0.2473 REMARK 3 6 3.1300 - 2.9400 1.00 2697 139 0.2291 0.2519 REMARK 3 7 2.9400 - 2.8000 1.00 2720 123 0.2234 0.2422 REMARK 3 8 2.8000 - 2.6700 1.00 2687 144 0.2299 0.2902 REMARK 3 9 2.6700 - 2.5700 1.00 2690 117 0.2184 0.2838 REMARK 3 10 2.5700 - 2.4800 1.00 2717 142 0.2185 0.2546 REMARK 3 11 2.4800 - 2.4000 1.00 2718 124 0.2237 0.2780 REMARK 3 12 2.4000 - 2.3400 1.00 2675 135 0.2225 0.2681 REMARK 3 13 2.3400 - 2.2700 1.00 2665 165 0.2276 0.2583 REMARK 3 14 2.2700 - 2.2200 1.00 2663 152 0.2588 0.2842 REMARK 3 15 2.2200 - 2.1700 1.00 2697 123 0.2389 0.2833 REMARK 3 16 2.1700 - 2.1200 1.00 2671 150 0.2479 0.2768 REMARK 3 17 2.1200 - 2.0800 1.00 2673 157 0.2669 0.3111 REMARK 3 18 2.0800 - 2.0400 1.00 2685 123 0.3091 0.3661 REMARK 3 19 2.0400 - 2.0000 1.00 2683 167 0.2828 0.3349 REMARK 3 20 2.0000 - 1.9700 1.00 2645 132 0.3003 0.3433 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.256 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.704 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4962 REMARK 3 ANGLE : 0.830 6745 REMARK 3 CHIRALITY : 0.050 764 REMARK 3 PLANARITY : 0.006 879 REMARK 3 DIHEDRAL : 14.862 1870 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 1 through 5 or REMARK 3 resid 10 through 17 or resid 19 through REMARK 3 69 or resid 71 through 85 or resid 97 REMARK 3 through 99 or resid 101 through 131 or REMARK 3 resid 133 through 142 or (resid 143 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 144 through 150 or REMARK 3 (resid 151 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 152 REMARK 3 through 153 or resid 155 through 174 or REMARK 3 (resid 175 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 176 or REMARK 3 resid 189 through 191 or resid 193 REMARK 3 through 197 or resid 199 through 211 or REMARK 3 resid 213 through 219)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 1 through 5 or REMARK 3 resid 10 through 17 or resid 19 through REMARK 3 69 or resid 71 through 85 or resid 97 REMARK 3 through 99 or resid 101 through 131 or REMARK 3 resid 133 through 142 or (resid 143 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 144 through 150 or REMARK 3 (resid 151 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 152 REMARK 3 through 153 or resid 155 through 157 or REMARK 3 (resid 158 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 159 REMARK 3 through 174 or (resid 175 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 176 or resid 189 through 191 or REMARK 3 resid 193 through 197 or resid 199 REMARK 3 through 202 or (resid 203 through 205 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 206 through 211 or REMARK 3 resid 213 through 219)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 1 through 17 or REMARK 3 resid 19 through 69 or resid 71 through REMARK 3 85 or resid 97 through 99 or resid 101 REMARK 3 through 131 or resid 133 through 153 or REMARK 3 resid 155 through 191 or resid 193 REMARK 3 through 197 or resid 199 through 202 or REMARK 3 (resid 203 through 205 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 206 through 211 or resid 213 REMARK 3 through 219)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1000258578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56827 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 45.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 1.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VKV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NAI, 5% PEG 3350, 6% GLYCEROL, REMARK 280 0.1M SODIUM CACODYLATE TRIHYDRATE PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 78.68000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -136.27776 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 157.36000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 440 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 523 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 532 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 87 REMARK 465 ALA A 88 REMARK 465 GLY A 89 REMARK 465 PRO A 90 REMARK 465 GLY A 220 REMARK 465 VAL A 221 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 465 HIS B 87 REMARK 465 ALA B 88 REMARK 465 GLY B 89 REMARK 465 PRO B 90 REMARK 465 ILE B 91 REMARK 465 ALA B 92 REMARK 465 GLY B 220 REMARK 465 VAL B 221 REMARK 465 GLY B 222 REMARK 465 GLY B 223 REMARK 465 PRO B 224 REMARK 465 GLY B 225 REMARK 465 HIS B 226 REMARK 465 LYS B 227 REMARK 465 ALA B 228 REMARK 465 ARG B 229 REMARK 465 VAL B 230 REMARK 465 LEU B 231 REMARK 465 LEU C 6 REMARK 465 GLN C 7 REMARK 465 GLY C 8 REMARK 465 GLN C 9 REMARK 465 HIS C 87 REMARK 465 ALA C 88 REMARK 465 GLY C 89 REMARK 465 PRO C 90 REMARK 465 ILE C 91 REMARK 465 ALA C 92 REMARK 465 ALA C 177 REMARK 465 SER C 178 REMARK 465 GLN C 179 REMARK 465 GLU C 180 REMARK 465 VAL C 181 REMARK 465 LYS C 182 REMARK 465 ASN C 183 REMARK 465 ALA C 184 REMARK 465 ALA C 185 REMARK 465 THR C 186 REMARK 465 GLU C 187 REMARK 465 THR C 188 REMARK 465 VAL C 221 REMARK 465 GLY C 222 REMARK 465 GLY C 223 REMARK 465 PRO C 224 REMARK 465 GLY C 225 REMARK 465 HIS C 226 REMARK 465 LYS C 227 REMARK 465 ALA C 228 REMARK 465 ARG C 229 REMARK 465 VAL C 230 REMARK 465 LEU C 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 7 CG CD OE1 NE2 REMARK 470 VAL A 86 CG1 CG2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 LEU A 205 CG CD1 CD2 REMARK 470 GLN B 7 CG CD OE1 NE2 REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 470 THR B 188 OG1 CG2 REMARK 470 ARG C 18 CG CD NE CZ NH1 NH2 REMARK 470 MET C 96 CG SD CE REMARK 470 ARG C 143 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 151 CG CD1 CD2 REMARK 470 LYS C 158 CG CD CE NZ REMARK 470 GLU C 175 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -121.06 51.37 REMARK 500 SER A 178 177.34 -57.03 REMARK 500 ALA B 31 -120.90 50.25 REMARK 500 THR B 188 -85.34 -112.87 REMARK 500 ALA C 31 -121.12 51.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 531 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 532 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH C 502 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH C 503 DISTANCE = 6.94 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RAO RELATED DB: PDB REMARK 900 RELATED ID: 7RAR RELATED DB: PDB REMARK 900 RELATED ID: 7RHM RELATED DB: PDB REMARK 900 RELATED ID: 7RHN RELATED DB: PDB REMARK 900 RELATED ID: 7RJ4 RELATED DB: PDB REMARK 900 RELATED ID: 7RJ2 RELATED DB: PDB REMARK 900 RELATED ID: 7RMJ RELATED DB: PDB DBREF 7RMM A 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 DBREF 7RMM B 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 DBREF 7RMM C 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 SEQADV 7RMM CYS A 14 UNP B6DRA0 ALA 146 ENGINEERED MUTATION SEQADV 7RMM CYS A 45 UNP B6DRA0 GLU 177 ENGINEERED MUTATION SEQADV 7RMM ASP A 74 UNP B6DRA0 ASN 206 ENGINEERED MUTATION SEQADV 7RMM ALA A 184 UNP B6DRA0 TRP 316 ENGINEERED MUTATION SEQADV 7RMM ALA A 185 UNP B6DRA0 MET 317 ENGINEERED MUTATION SEQADV 7RMM CYS B 14 UNP B6DRA0 ALA 146 ENGINEERED MUTATION SEQADV 7RMM CYS B 45 UNP B6DRA0 GLU 177 ENGINEERED MUTATION SEQADV 7RMM ASP B 74 UNP B6DRA0 ASN 206 ENGINEERED MUTATION SEQADV 7RMM ALA B 184 UNP B6DRA0 TRP 316 ENGINEERED MUTATION SEQADV 7RMM ALA B 185 UNP B6DRA0 MET 317 ENGINEERED MUTATION SEQADV 7RMM CYS C 14 UNP B6DRA0 ALA 146 ENGINEERED MUTATION SEQADV 7RMM CYS C 45 UNP B6DRA0 GLU 177 ENGINEERED MUTATION SEQADV 7RMM ASP C 74 UNP B6DRA0 ASN 206 ENGINEERED MUTATION SEQADV 7RMM ALA C 184 UNP B6DRA0 TRP 316 ENGINEERED MUTATION SEQADV 7RMM ALA C 185 UNP B6DRA0 MET 317 ENGINEERED MUTATION SEQRES 1 A 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 231 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 231 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 231 MET GLN MET LEU LYS GLU THR ILE ASP GLU GLU ALA ALA SEQRES 7 A 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 231 ASN ALA ALA THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU SEQRES 1 B 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 B 231 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 B 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 B 231 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 B 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 B 231 MET GLN MET LEU LYS GLU THR ILE ASP GLU GLU ALA ALA SEQRES 7 B 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 B 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 B 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 B 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 B 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 B 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 B 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 B 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 B 231 ASN ALA ALA THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 B 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 B 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 B 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU SEQRES 1 C 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 C 231 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 C 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 C 231 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 C 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 C 231 MET GLN MET LEU LYS GLU THR ILE ASP GLU GLU ALA ALA SEQRES 7 C 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 C 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 C 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 C 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 C 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 C 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 C 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 C 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 C 231 ASN ALA ALA THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 C 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 C 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 C 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU HET IOD A 301 1 HET IOD A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HET CL A 307 1 HET CL A 308 1 HET IOD B 301 1 HET IOD B 302 1 HET CL B 303 1 HET CL B 304 1 HET CL B 305 1 HET CL B 306 1 HET CL B 307 1 HET CL B 308 1 HET IOD C 301 1 HET IOD C 302 1 HET CL C 303 1 HET CL C 304 1 HET CL C 305 1 HET CL C 306 1 HET CL C 307 1 HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION FORMUL 4 IOD 6(I 1-) FORMUL 6 CL 17(CL 1-) FORMUL 27 HOH *362(H2 O) HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 GLU A 35 SER A 44 1 10 HELIX 3 AA3 THR A 48 THR A 58 1 11 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 100 ALA A 105 1 6 HELIX 6 AA6 THR A 110 THR A 119 1 10 HELIX 7 AA7 PRO A 125 SER A 146 1 22 HELIX 8 AA8 SER A 149 ILE A 153 5 5 HELIX 9 AA9 PRO A 160 GLU A 175 1 16 HELIX 10 AB1 SER A 178 LEU A 190 1 13 HELIX 11 AB2 ASN A 195 GLY A 206 1 12 HELIX 12 AB3 THR A 210 CYS A 218 1 9 HELIX 13 AB4 SER B 16 ALA B 31 1 16 HELIX 14 AB5 GLU B 35 SER B 44 1 10 HELIX 15 AB6 THR B 48 VAL B 59 1 12 HELIX 16 AB7 HIS B 62 HIS B 84 1 23 HELIX 17 AB8 ARG B 100 ALA B 105 1 6 HELIX 18 AB9 THR B 110 THR B 119 1 10 HELIX 19 AC1 PRO B 125 SER B 146 1 22 HELIX 20 AC2 SER B 149 ILE B 153 5 5 HELIX 21 AC3 PRO B 160 GLN B 176 1 17 HELIX 22 AC4 SER B 178 ALA B 185 1 8 HELIX 23 AC5 THR B 188 ASN B 193 1 6 HELIX 24 AC6 ASN B 195 GLY B 206 1 12 HELIX 25 AC7 THR B 210 CYS B 218 1 9 HELIX 26 AC8 SER C 16 ALA C 31 1 16 HELIX 27 AC9 GLU C 35 SER C 44 1 10 HELIX 28 AD1 THR C 48 THR C 58 1 11 HELIX 29 AD2 HIS C 62 HIS C 84 1 23 HELIX 30 AD3 ARG C 100 ALA C 105 1 6 HELIX 31 AD4 THR C 110 THR C 119 1 10 HELIX 32 AD5 PRO C 125 SER C 146 1 22 HELIX 33 AD6 SER C 149 ILE C 153 5 5 HELIX 34 AD7 PRO C 160 GLN C 176 1 17 HELIX 35 AD8 ASN C 195 GLY C 206 1 12 HELIX 36 AD9 THR C 210 CYS C 218 1 9 SHEET 1 AA1 2 ILE A 2 GLN A 4 0 SHEET 2 AA1 2 MET A 10 HIS A 12 -1 O VAL A 11 N VAL A 3 SHEET 1 AA2 2 ILE B 2 GLN B 4 0 SHEET 2 AA2 2 MET B 10 HIS B 12 -1 O VAL B 11 N VAL B 3 SHEET 1 AA3 2 ILE C 2 VAL C 3 0 SHEET 2 AA3 2 VAL C 11 HIS C 12 -1 O VAL C 11 N VAL C 3 SSBOND 1 CYS A 14 CYS B 45 1555 3655 2.09 SSBOND 2 CYS A 45 CYS B 14 1555 2545 2.07 SSBOND 3 CYS A 198 CYS A 218 1555 1555 2.03 SSBOND 4 CYS B 198 CYS B 218 1555 1555 2.04 SSBOND 5 CYS C 14 CYS C 45 1555 5555 2.07 SSBOND 6 CYS C 198 CYS C 218 1555 1555 2.04 CISPEP 1 ASN A 121 PRO A 122 0 1.12 CISPEP 2 ASN B 121 PRO B 122 0 0.91 CISPEP 3 ASN C 121 PRO C 122 0 -0.30 CRYST1 157.360 157.360 56.575 90.00 90.00 120.00 P 6 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006355 0.003669 0.000000 0.00000 SCALE2 0.000000 0.007338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017676 0.00000 MTRIX1 1 -0.999939 -0.006467 -0.008980 156.96638 1 MTRIX2 1 0.006495 -0.999974 -0.003072 -91.45144 1 MTRIX3 1 -0.008960 -0.003130 0.999955 0.59715 1 MTRIX1 2 0.026571 -0.999618 0.007543 -47.45262 1 MTRIX2 2 -0.999638 -0.026602 -0.004055 77.49209 1 MTRIX3 2 0.004254 -0.007432 -0.999963 27.49693 1