HEADER MEMBRANE PROTEIN 03-AUG-21 7RPJ TITLE CRYO-EM STRUCTURE OF MURINE DISPATCHED NNN MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISPATCHED HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 172-1521; COMPND 5 SYNONYM: MDISPA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DISP1, DISP, DISPA, ICB, ICBINS; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293F KEYWDS RND TRANSPORTER, HEDGEHOG BINDING, STEROL SENSING DOMAIN, SODIUM KEYWDS 2 BINDING, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR D.ASARNOW,Q.WANG,K.DING,Y.CHENG,P.A.BEACHY REVDAT 4 20-NOV-24 7RPJ 1 REMARK REVDAT 3 24-NOV-21 7RPJ 1 JRNL REVDAT 2 10-NOV-21 7RPJ 1 JRNL REVDAT 1 27-OCT-21 7RPJ 0 JRNL AUTH Q.WANG,D.E.ASARNOW,K.DING,R.K.MANN,J.HATAKEYAMA,Y.ZHANG, JRNL AUTH 2 Y.MA,Y.CHENG,P.A.BEACHY JRNL TITL DISPATCHED USES NA + FLUX TO POWER RELEASE OF LIPID-MODIFIED JRNL TITL 2 HEDGEHOG. JRNL REF NATURE V. 599 320 2021 JRNL REFN ESSN 1476-4687 JRNL PMID 34707294 JRNL DOI 10.1038/S41586-021-03996-0 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, SERIALEM, CRYOSPARC, RELION, REMARK 3 ISOLDE, COOT, CRYOSPARC, CRYOSPARC, REMARK 3 RELION, CRYOSPARC, PHENIX, ISOLDE REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 116.700 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 55982 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7RPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000258719. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : DISPATCHED PROTEIN NNN MUTANT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.30 REMARK 245 SAMPLE SUPPORT DETAILS : WAIT TIME 20 SECONDS, BLOT TIME REMARK 245 4 SECONDS, BLOTTING FORCE 0 REMARK 245 SAMPLE VITRIFICATION DETAILS : WAIT TIME 20 SECONDS, BLOT TIME REMARK 245 4 SECONDS, BLOTTING FORCE 0 REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4467 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6550.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : 59880 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : AUTOMATED DATA COLLECTION IN REMARK 245 SERIALEM USING 3X3 IMAGE SHIFT PATTERN (ONE SHOT PER HOLE), REMARK 245 USING BEAM TILT COMPENSATION. LOW PARTICLE CONCENTRATION REMARK 245 NECESSITATED TARGETING OF HOLE EDGES. REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 170 REMARK 465 ALA A 171 REMARK 465 ARG A 172 REMARK 465 PRO A 173 REMARK 465 HIS A 264 REMARK 465 ARG A 265 REMARK 465 ASP A 266 REMARK 465 ASP A 267 REMARK 465 ARG A 268 REMARK 465 TRP A 269 REMARK 465 SER A 270 REMARK 465 ASP A 271 REMARK 465 ASP A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 GLU A 275 REMARK 465 ARG A 276 REMARK 465 GLU A 277 REMARK 465 ARG A 278 REMARK 465 ARG A 279 REMARK 465 GLU A 280 REMARK 465 VAL A 281 REMARK 465 ASP A 282 REMARK 465 ASP A 399 REMARK 465 LYS A 400 REMARK 465 ALA A 401 REMARK 465 ALA A 402 REMARK 465 ARG A 403 REMARK 465 ARG A 404 REMARK 465 LYS A 405 REMARK 465 ASP A 406 REMARK 465 GLN A 407 REMARK 465 LEU A 408 REMARK 465 LYS A 409 REMARK 465 THR A 667 REMARK 465 CYS A 668 REMARK 465 PHE A 669 REMARK 465 ARG A 670 REMARK 465 LYS A 671 REMARK 465 PRO A 672 REMARK 465 GLN A 673 REMARK 465 PRO A 674 REMARK 465 GLN A 675 REMARK 465 ALA A 676 REMARK 465 TYR A 677 REMARK 465 ASP A 678 REMARK 465 LYS A 679 REMARK 465 SER A 680 REMARK 465 PRO A 1144 REMARK 465 THR A 1145 REMARK 465 LYS A 1146 REMARK 465 LEU A 1147 REMARK 465 GLN A 1148 REMARK 465 CYS A 1149 REMARK 465 SER A 1150 REMARK 465 PRO A 1151 REMARK 465 PHE A 1152 REMARK 465 SER A 1153 REMARK 465 HIS A 1154 REMARK 465 THR A 1155 REMARK 465 LEU A 1156 REMARK 465 SER A 1157 REMARK 465 ALA A 1158 REMARK 465 ARG A 1159 REMARK 465 PRO A 1160 REMARK 465 GLY A 1161 REMARK 465 ASP A 1162 REMARK 465 ARG A 1163 REMARK 465 GLY A 1164 REMARK 465 PRO A 1165 REMARK 465 SER A 1166 REMARK 465 LYS A 1167 REMARK 465 THR A 1168 REMARK 465 HIS A 1169 REMARK 465 ALA A 1170 REMARK 465 ALA A 1171 REMARK 465 SER A 1172 REMARK 465 ALA A 1173 REMARK 465 TYR A 1174 REMARK 465 SER A 1175 REMARK 465 VAL A 1176 REMARK 465 ASP A 1177 REMARK 465 ALA A 1178 REMARK 465 ARG A 1179 REMARK 465 GLY A 1180 REMARK 465 GLN A 1181 REMARK 465 LYS A 1182 REMARK 465 SER A 1183 REMARK 465 GLN A 1184 REMARK 465 LEU A 1185 REMARK 465 GLU A 1186 REMARK 465 HIS A 1187 REMARK 465 GLU A 1188 REMARK 465 PHE A 1189 REMARK 465 TYR A 1190 REMARK 465 GLU A 1191 REMARK 465 LEU A 1192 REMARK 465 GLN A 1193 REMARK 465 PRO A 1194 REMARK 465 LEU A 1195 REMARK 465 ALA A 1196 REMARK 465 SER A 1197 REMARK 465 HIS A 1198 REMARK 465 SER A 1199 REMARK 465 CYS A 1200 REMARK 465 THR A 1201 REMARK 465 SER A 1202 REMARK 465 SER A 1203 REMARK 465 GLU A 1204 REMARK 465 LYS A 1205 REMARK 465 THR A 1206 REMARK 465 THR A 1207 REMARK 465 TYR A 1208 REMARK 465 GLU A 1209 REMARK 465 GLU A 1210 REMARK 465 PRO A 1211 REMARK 465 HIS A 1212 REMARK 465 THR A 1213 REMARK 465 CYS A 1214 REMARK 465 SER A 1215 REMARK 465 GLU A 1216 REMARK 465 PHE A 1217 REMARK 465 PHE A 1218 REMARK 465 ASN A 1219 REMARK 465 GLY A 1220 REMARK 465 GLN A 1221 REMARK 465 ALA A 1222 REMARK 465 LYS A 1223 REMARK 465 ASN A 1224 REMARK 465 LEU A 1225 REMARK 465 ARG A 1226 REMARK 465 MET A 1227 REMARK 465 PRO A 1228 REMARK 465 VAL A 1229 REMARK 465 PRO A 1230 REMARK 465 ALA A 1231 REMARK 465 ALA A 1232 REMARK 465 TYR A 1233 REMARK 465 SER A 1234 REMARK 465 SER A 1235 REMARK 465 GLU A 1236 REMARK 465 LEU A 1237 REMARK 465 THR A 1238 REMARK 465 LYS A 1239 REMARK 465 SER A 1240 REMARK 465 PRO A 1241 REMARK 465 SER A 1242 REMARK 465 SER A 1243 REMARK 465 GLU A 1244 REMARK 465 PRO A 1245 REMARK 465 GLY A 1246 REMARK 465 SER A 1247 REMARK 465 ALA A 1248 REMARK 465 LEU A 1249 REMARK 465 LEU A 1250 REMARK 465 GLN A 1251 REMARK 465 SER A 1252 REMARK 465 CYS A 1253 REMARK 465 LEU A 1254 REMARK 465 GLU A 1255 REMARK 465 GLN A 1256 REMARK 465 ASP A 1257 REMARK 465 THR A 1258 REMARK 465 VAL A 1259 REMARK 465 CYS A 1260 REMARK 465 HIS A 1261 REMARK 465 PHE A 1262 REMARK 465 SER A 1263 REMARK 465 LEU A 1264 REMARK 465 ASN A 1265 REMARK 465 PRO A 1266 REMARK 465 ARG A 1267 REMARK 465 CYS A 1268 REMARK 465 ASN A 1269 REMARK 465 CYS A 1270 REMARK 465 ARG A 1271 REMARK 465 ASP A 1272 REMARK 465 ALA A 1273 REMARK 465 TYR A 1274 REMARK 465 THR A 1275 REMARK 465 HIS A 1276 REMARK 465 LEU A 1277 REMARK 465 GLN A 1278 REMARK 465 TYR A 1279 REMARK 465 GLY A 1280 REMARK 465 LEU A 1281 REMARK 465 PRO A 1282 REMARK 465 GLU A 1283 REMARK 465 ILE A 1284 REMARK 465 HIS A 1285 REMARK 465 CYS A 1286 REMARK 465 GLN A 1287 REMARK 465 GLN A 1288 REMARK 465 MET A 1289 REMARK 465 GLY A 1290 REMARK 465 ASP A 1291 REMARK 465 SER A 1292 REMARK 465 LEU A 1293 REMARK 465 CYS A 1294 REMARK 465 HIS A 1295 REMARK 465 LYS A 1296 REMARK 465 CYS A 1297 REMARK 465 ALA A 1298 REMARK 465 SER A 1299 REMARK 465 THR A 1300 REMARK 465 ALA A 1301 REMARK 465 GLY A 1302 REMARK 465 GLY A 1303 REMARK 465 PHE A 1304 REMARK 465 VAL A 1305 REMARK 465 GLN A 1306 REMARK 465 ILE A 1307 REMARK 465 GLN A 1308 REMARK 465 SER A 1309 REMARK 465 SER A 1310 REMARK 465 VAL A 1311 REMARK 465 ALA A 1312 REMARK 465 PRO A 1313 REMARK 465 LEU A 1314 REMARK 465 LYS A 1315 REMARK 465 ALA A 1316 REMARK 465 SER A 1317 REMARK 465 HIS A 1318 REMARK 465 GLN A 1319 REMARK 465 ALA A 1320 REMARK 465 ALA A 1321 REMARK 465 GLU A 1322 REMARK 465 GLY A 1323 REMARK 465 LEU A 1324 REMARK 465 LEU A 1325 REMARK 465 HIS A 1326 REMARK 465 PRO A 1327 REMARK 465 ALA A 1328 REMARK 465 GLN A 1329 REMARK 465 HIS A 1330 REMARK 465 MET A 1331 REMARK 465 LEU A 1332 REMARK 465 PRO A 1333 REMARK 465 PRO A 1334 REMARK 465 GLY A 1335 REMARK 465 MET A 1336 REMARK 465 GLN A 1337 REMARK 465 ASN A 1338 REMARK 465 SER A 1339 REMARK 465 ARG A 1340 REMARK 465 PRO A 1341 REMARK 465 ARG A 1342 REMARK 465 ASN A 1343 REMARK 465 PHE A 1344 REMARK 465 PHE A 1345 REMARK 465 LEU A 1346 REMARK 465 HIS A 1347 REMARK 465 SER A 1348 REMARK 465 VAL A 1349 REMARK 465 GLN A 1350 REMARK 465 HIS A 1351 REMARK 465 PHE A 1352 REMARK 465 GLN A 1353 REMARK 465 ALA A 1354 REMARK 465 GLN A 1355 REMARK 465 GLU A 1356 REMARK 465 ASN A 1357 REMARK 465 LEU A 1358 REMARK 465 GLY A 1359 REMARK 465 ARG A 1360 REMARK 465 THR A 1361 REMARK 465 SER A 1362 REMARK 465 THR A 1363 REMARK 465 HIS A 1364 REMARK 465 SER A 1365 REMARK 465 THR A 1366 REMARK 465 ASP A 1367 REMARK 465 GLU A 1368 REMARK 465 ARG A 1369 REMARK 465 LEU A 1370 REMARK 465 PRO A 1371 REMARK 465 ARG A 1372 REMARK 465 THR A 1373 REMARK 465 ALA A 1374 REMARK 465 GLU A 1375 REMARK 465 LEU A 1376 REMARK 465 SER A 1377 REMARK 465 PRO A 1378 REMARK 465 PRO A 1379 REMARK 465 PRO A 1380 REMARK 465 SER A 1381 REMARK 465 ASP A 1382 REMARK 465 SER A 1383 REMARK 465 ARG A 1384 REMARK 465 SER A 1385 REMARK 465 THR A 1386 REMARK 465 GLU A 1387 REMARK 465 SER A 1388 REMARK 465 PHE A 1389 REMARK 465 GLN A 1390 REMARK 465 ARG A 1391 REMARK 465 ALA A 1392 REMARK 465 CYS A 1393 REMARK 465 CYS A 1394 REMARK 465 HIS A 1395 REMARK 465 PRO A 1396 REMARK 465 GLU A 1397 REMARK 465 ASN A 1398 REMARK 465 ASN A 1399 REMARK 465 GLN A 1400 REMARK 465 ARG A 1401 REMARK 465 ARG A 1402 REMARK 465 LEU A 1403 REMARK 465 CYS A 1404 REMARK 465 LYS A 1405 REMARK 465 SER A 1406 REMARK 465 ARG A 1407 REMARK 465 ASP A 1408 REMARK 465 PRO A 1409 REMARK 465 GLY A 1410 REMARK 465 ASP A 1411 REMARK 465 THR A 1412 REMARK 465 GLU A 1413 REMARK 465 GLY A 1414 REMARK 465 SER A 1415 REMARK 465 GLY A 1416 REMARK 465 GLY A 1417 REMARK 465 THR A 1418 REMARK 465 LYS A 1419 REMARK 465 SER A 1420 REMARK 465 LYS A 1421 REMARK 465 VAL A 1422 REMARK 465 SER A 1423 REMARK 465 GLY A 1424 REMARK 465 LEU A 1425 REMARK 465 PRO A 1426 REMARK 465 ASN A 1427 REMARK 465 GLN A 1428 REMARK 465 THR A 1429 REMARK 465 ASP A 1430 REMARK 465 LYS A 1431 REMARK 465 GLU A 1432 REMARK 465 GLU A 1433 REMARK 465 LYS A 1434 REMARK 465 GLN A 1435 REMARK 465 VAL A 1436 REMARK 465 GLU A 1437 REMARK 465 PRO A 1438 REMARK 465 SER A 1439 REMARK 465 LEU A 1440 REMARK 465 LEU A 1441 REMARK 465 GLN A 1442 REMARK 465 THR A 1443 REMARK 465 ASP A 1444 REMARK 465 GLU A 1445 REMARK 465 THR A 1446 REMARK 465 VAL A 1447 REMARK 465 ASN A 1448 REMARK 465 SER A 1449 REMARK 465 GLU A 1450 REMARK 465 HIS A 1451 REMARK 465 LEU A 1452 REMARK 465 ASN A 1453 REMARK 465 HIS A 1454 REMARK 465 ASN A 1455 REMARK 465 GLU A 1456 REMARK 465 SER A 1457 REMARK 465 ASN A 1458 REMARK 465 PHE A 1459 REMARK 465 THR A 1460 REMARK 465 PHE A 1461 REMARK 465 SER A 1462 REMARK 465 HIS A 1463 REMARK 465 LEU A 1464 REMARK 465 PRO A 1465 REMARK 465 GLY A 1466 REMARK 465 GLU A 1467 REMARK 465 ALA A 1468 REMARK 465 GLY A 1469 REMARK 465 CYS A 1470 REMARK 465 ARG A 1471 REMARK 465 SER A 1472 REMARK 465 CYS A 1473 REMARK 465 PRO A 1474 REMARK 465 ASN A 1475 REMARK 465 SER A 1476 REMARK 465 PRO A 1477 REMARK 465 GLN A 1478 REMARK 465 SER A 1479 REMARK 465 CYS A 1480 REMARK 465 ARG A 1481 REMARK 465 SER A 1482 REMARK 465 ILE A 1483 REMARK 465 MET A 1484 REMARK 465 ARG A 1485 REMARK 465 SER A 1486 REMARK 465 LYS A 1487 REMARK 465 CYS A 1488 REMARK 465 GLY A 1489 REMARK 465 THR A 1490 REMARK 465 GLU A 1491 REMARK 465 ASP A 1492 REMARK 465 CYS A 1493 REMARK 465 GLN A 1494 REMARK 465 THR A 1495 REMARK 465 PRO A 1496 REMARK 465 ASN A 1497 REMARK 465 LEU A 1498 REMARK 465 GLU A 1499 REMARK 465 ALA A 1500 REMARK 465 ASN A 1501 REMARK 465 VAL A 1502 REMARK 465 PRO A 1503 REMARK 465 ALA A 1504 REMARK 465 VAL A 1505 REMARK 465 PRO A 1506 REMARK 465 THR A 1507 REMARK 465 HIS A 1508 REMARK 465 SER A 1509 REMARK 465 ASP A 1510 REMARK 465 LEU A 1511 REMARK 465 SER A 1512 REMARK 465 GLY A 1513 REMARK 465 GLU A 1514 REMARK 465 SER A 1515 REMARK 465 LEU A 1516 REMARK 465 LEU A 1517 REMARK 465 ILE A 1518 REMARK 465 LYS A 1519 REMARK 465 THR A 1520 REMARK 465 LEU A 1521 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 390 C1 NAG A 1604 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 225 -64.14 -108.84 REMARK 500 TYR A 245 -125.23 57.90 REMARK 500 ALA A 247 164.66 -47.22 REMARK 500 ILE A 329 -60.60 -107.80 REMARK 500 CYS A 348 146.30 -179.05 REMARK 500 ASN A 421 19.48 53.43 REMARK 500 PRO A 456 43.96 -74.90 REMARK 500 VAL A 547 -70.11 -88.57 REMARK 500 TYR A 661 -44.64 -134.34 REMARK 500 VAL A 684 -24.42 -141.52 REMARK 500 LYS A 706 -55.97 -135.22 REMARK 500 VAL A 736 -39.42 -132.73 REMARK 500 ILE A 785 109.92 -52.64 REMARK 500 PRO A 793 46.01 -83.71 REMARK 500 GLU A 807 -148.80 -94.06 REMARK 500 SER A 967 113.36 -170.05 REMARK 500 PHE A1123 -72.70 -96.39 REMARK 500 LEU A1132 15.15 -151.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 1604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-24616 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-24614 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-24615 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-24617 RELATED DB: EMDB DBREF 7RPJ A 172 1521 UNP Q3TDN0 DISP1_MOUSE 172 1521 SEQADV 7RPJ MET A 170 UNP Q3TDN0 EXPRESSION TAG SEQADV 7RPJ ALA A 171 UNP Q3TDN0 EXPRESSION TAG SEQADV 7RPJ ASN A 571 UNP Q3TDN0 ASP 571 ENGINEERED MUTATION SEQADV 7RPJ ASN A 572 UNP Q3TDN0 ASP 572 ENGINEERED MUTATION SEQADV 7RPJ ASN A 1049 UNP Q3TDN0 ASP 1049 ENGINEERED MUTATION SEQRES 1 A 1352 MET ALA ARG PRO PHE LYS PHE PRO ARG SER TYR ALA ALA SEQRES 2 A 1352 LEU LEU ALA ASP TRP PRO VAL VAL VAL LEU GLY MET CYS SEQRES 3 A 1352 THR LEU LEU ILE VAL VAL CYS ALA LEU VAL GLY VAL LEU SEQRES 4 A 1352 VAL PRO GLU LEU PRO ASP PHE SER ASP PRO LEU LEU GLY SEQRES 5 A 1352 PHE GLU PRO ARG GLY THR THR ILE GLY GLN ARG LEU VAL SEQRES 6 A 1352 THR TRP ASN ASN MET MET ARG ASN THR GLY TYR LYS ALA SEQRES 7 A 1352 THR LEU ALA ASN TYR PRO TYR LYS TYR ALA GLU GLU GLN SEQRES 8 A 1352 ALA ARG SER HIS ARG ASP ASP ARG TRP SER ASP ASP HIS SEQRES 9 A 1352 HIS GLU ARG GLU ARG ARG GLU VAL ASP TRP ASN PHE GLN SEQRES 10 A 1352 LYS ASP SER PHE PHE CYS ASP VAL PRO SER ASP GLY TYR SEQRES 11 A 1352 SER ARG VAL VAL PHE ALA SER ALA GLY GLY GLU THR LEU SEQRES 12 A 1352 TRP ASN LEU PRO ALA ILE LYS SER MET CYS ASP VAL ASP SEQRES 13 A 1352 ASN SER ARG ILE ARG SER HIS PRO GLN PHE SER ASP LEU SEQRES 14 A 1352 CYS GLN ARG THR THR ALA VAL SER CYS CYS PRO SER TRP SEQRES 15 A 1352 THR LEU GLY ASN TYR ILE ALA ILE LEU ASN ASN ARG SER SEQRES 16 A 1352 SER CYS GLN LYS ILE VAL GLU ARG ASP VAL SER HIS THR SEQRES 17 A 1352 LEU LYS LEU LEU ARG THR CYS ALA LYS HIS TYR GLN ASN SEQRES 18 A 1352 GLY THR LEU GLY PRO ASP CYS TRP ASP LYS ALA ALA ARG SEQRES 19 A 1352 ARG LYS ASP GLN LEU LYS CYS THR ASN VAL PRO ARG LYS SEQRES 20 A 1352 CYS THR LYS TYR ASN ALA VAL TYR GLN ILE LEU HIS TYR SEQRES 21 A 1352 LEU VAL ASP LYS ASP PHE MET THR PRO LYS THR ALA ASP SEQRES 22 A 1352 TYR ALA VAL PRO ALA LEU LYS TYR SER MET LEU PHE SER SEQRES 23 A 1352 PRO THR GLU LYS GLY GLU SER MET MET ASN ILE TYR LEU SEQRES 24 A 1352 ASP ASN PHE GLU ASN TRP ASN SER SER ASP GLY ILE THR SEQRES 25 A 1352 THR VAL THR GLY ILE GLU PHE GLY ILE LYS HIS SER LEU SEQRES 26 A 1352 PHE GLN ASP TYR LEU LEU MET ASP THR VAL TYR PRO ALA SEQRES 27 A 1352 ILE ALA ILE ALA ILE VAL LEU LEU ILE MET CYS VAL TYR SEQRES 28 A 1352 THR LYS SER MET PHE ILE THR LEU MET THR MET PHE ALA SEQRES 29 A 1352 ILE ILE SER SER LEU ILE VAL SER TYR PHE LEU TYR ARG SEQRES 30 A 1352 VAL VAL PHE ASN PHE GLU PHE PHE PRO PHE MET ASN LEU SEQRES 31 A 1352 THR ALA LEU ILE ILE LEU VAL GLY ILE GLY ALA ASN ASN SEQRES 32 A 1352 ALA PHE VAL LEU CYS ASP VAL TRP ASN TYR THR LYS PHE SEQRES 33 A 1352 ASP LYS PRO ARG ALA GLU THR SER GLU ALA VAL SER VAL SEQRES 34 A 1352 THR LEU GLN HIS ALA ALA LEU SER MET PHE VAL THR SER SEQRES 35 A 1352 PHE THR THR ALA ALA ALA PHE TYR ALA ASN TYR VAL SER SEQRES 36 A 1352 ASN ILE THR ALA ILE ARG CYS PHE GLY VAL TYR ALA GLY SEQRES 37 A 1352 THR ALA ILE LEU VAL ASN TYR VAL LEU MET VAL THR TRP SEQRES 38 A 1352 LEU PRO ALA VAL ILE VAL LEU HIS GLU ARG TYR LEU LEU SEQRES 39 A 1352 ASN ILE PHE THR CYS PHE ARG LYS PRO GLN PRO GLN ALA SEQRES 40 A 1352 TYR ASP LYS SER CYS TRP ALA VAL LEU CYS GLN LYS CYS SEQRES 41 A 1352 ARG ARG VAL LEU PHE ALA VAL SER GLU ALA SER ARG ILE SEQRES 42 A 1352 PHE PHE GLU LYS VAL LEU PRO CYS ILE VAL ILE LYS PHE SEQRES 43 A 1352 ARG TYR LEU TRP LEU ILE TRP PHE LEU ALA LEU THR VAL SEQRES 44 A 1352 GLY GLY ALA TYR ILE VAL CYS VAL ASN PRO LYS MET LYS SEQRES 45 A 1352 LEU PRO SER LEU GLU LEU SER GLU PHE GLN VAL PHE ARG SEQRES 46 A 1352 SER SER HIS PRO PHE GLU ARG TYR ASP ALA GLU PHE LYS SEQRES 47 A 1352 LYS LEU PHE MET PHE GLU ARG VAL HIS HIS GLY GLU GLU SEQRES 48 A 1352 LEU HIS MET PRO ILE THR VAL ILE TRP GLY VAL SER PRO SEQRES 49 A 1352 GLU ASP SER GLY ASP PRO LEU ASN PRO LYS SER LYS GLY SEQRES 50 A 1352 GLU LEU THR LEU ASP SER THR PHE ASN ILE ALA SER PRO SEQRES 51 A 1352 ALA SER GLN ALA TRP ILE LEU HIS PHE CYS GLN LYS LEU SEQRES 52 A 1352 ARG ASN GLN THR PHE PHE HIS GLN THR GLU GLN GLN ASP SEQRES 53 A 1352 PHE THR SER CYS PHE ILE GLU THR PHE LYS GLN TRP MET SEQRES 54 A 1352 GLU ASN GLN ASP CYS ASP GLU PRO ALA LEU TYR PRO CYS SEQRES 55 A 1352 CYS SER HIS CYS SER PHE PRO TYR LYS GLN GLU VAL PHE SEQRES 56 A 1352 GLU LEU CYS ILE LYS LYS ALA ILE MET GLU LEU ASP ARG SEQRES 57 A 1352 SER THR GLY TYR HIS LEU ASN ASN LYS THR PRO GLY PRO SEQRES 58 A 1352 ARG PHE ASP ILE ASN ASP THR ILE ARG ALA VAL VAL LEU SEQRES 59 A 1352 GLU PHE GLN SER THR PHE LEU PHE THR LEU ALA TYR GLU SEQRES 60 A 1352 LYS MET GLN GLN PHE TYR LYS GLU VAL ASP SER TRP ILE SEQRES 61 A 1352 SER HIS GLU LEU SER SER ALA PRO GLU GLY LEU SER ARG SEQRES 62 A 1352 GLY TRP PHE VAL SER ASN LEU GLU PHE TYR ASP LEU GLN SEQRES 63 A 1352 ASP SER LEU SER ASP GLY THR LEU ILE ALA MET GLY LEU SEQRES 64 A 1352 SER VAL ALA VAL ALA PHE SER VAL MET LEU LEU THR THR SEQRES 65 A 1352 TRP ASN ILE ILE ILE SER LEU TYR ALA ILE VAL SER ILE SEQRES 66 A 1352 ALA GLY THR ILE PHE VAL THR VAL GLY SER LEU VAL LEU SEQRES 67 A 1352 LEU GLY TRP GLU LEU ASN VAL LEU GLU SER VAL THR ILE SEQRES 68 A 1352 SER VAL ALA VAL GLY LEU SER VAL ASN PHE ALA VAL HIS SEQRES 69 A 1352 TYR GLY VAL ALA TYR ARG LEU ALA PRO ASP PRO ASP ARG SEQRES 70 A 1352 GLU GLY LYS VAL ILE PHE SER LEU SER ARG MET GLY SER SEQRES 71 A 1352 ALA ILE ALA MET ALA ALA LEU THR THR PHE VAL ALA GLY SEQRES 72 A 1352 ALA MET MET MET PRO SER THR VAL LEU ALA TYR THR GLN SEQRES 73 A 1352 LEU GLY THR PHE MET MET LEU VAL MET CYS VAL SER TRP SEQRES 74 A 1352 ALA PHE ALA THR PHE PHE PHE GLN CYS LEU CYS ARG CYS SEQRES 75 A 1352 LEU GLY PRO GLN GLY THR CYS GLY GLN ILE PRO PHE PRO SEQRES 76 A 1352 THR LYS LEU GLN CYS SER PRO PHE SER HIS THR LEU SER SEQRES 77 A 1352 ALA ARG PRO GLY ASP ARG GLY PRO SER LYS THR HIS ALA SEQRES 78 A 1352 ALA SER ALA TYR SER VAL ASP ALA ARG GLY GLN LYS SER SEQRES 79 A 1352 GLN LEU GLU HIS GLU PHE TYR GLU LEU GLN PRO LEU ALA SEQRES 80 A 1352 SER HIS SER CYS THR SER SER GLU LYS THR THR TYR GLU SEQRES 81 A 1352 GLU PRO HIS THR CYS SER GLU PHE PHE ASN GLY GLN ALA SEQRES 82 A 1352 LYS ASN LEU ARG MET PRO VAL PRO ALA ALA TYR SER SER SEQRES 83 A 1352 GLU LEU THR LYS SER PRO SER SER GLU PRO GLY SER ALA SEQRES 84 A 1352 LEU LEU GLN SER CYS LEU GLU GLN ASP THR VAL CYS HIS SEQRES 85 A 1352 PHE SER LEU ASN PRO ARG CYS ASN CYS ARG ASP ALA TYR SEQRES 86 A 1352 THR HIS LEU GLN TYR GLY LEU PRO GLU ILE HIS CYS GLN SEQRES 87 A 1352 GLN MET GLY ASP SER LEU CYS HIS LYS CYS ALA SER THR SEQRES 88 A 1352 ALA GLY GLY PHE VAL GLN ILE GLN SER SER VAL ALA PRO SEQRES 89 A 1352 LEU LYS ALA SER HIS GLN ALA ALA GLU GLY LEU LEU HIS SEQRES 90 A 1352 PRO ALA GLN HIS MET LEU PRO PRO GLY MET GLN ASN SER SEQRES 91 A 1352 ARG PRO ARG ASN PHE PHE LEU HIS SER VAL GLN HIS PHE SEQRES 92 A 1352 GLN ALA GLN GLU ASN LEU GLY ARG THR SER THR HIS SER SEQRES 93 A 1352 THR ASP GLU ARG LEU PRO ARG THR ALA GLU LEU SER PRO SEQRES 94 A 1352 PRO PRO SER ASP SER ARG SER THR GLU SER PHE GLN ARG SEQRES 95 A 1352 ALA CYS CYS HIS PRO GLU ASN ASN GLN ARG ARG LEU CYS SEQRES 96 A 1352 LYS SER ARG ASP PRO GLY ASP THR GLU GLY SER GLY GLY SEQRES 97 A 1352 THR LYS SER LYS VAL SER GLY LEU PRO ASN GLN THR ASP SEQRES 98 A 1352 LYS GLU GLU LYS GLN VAL GLU PRO SER LEU LEU GLN THR SEQRES 99 A 1352 ASP GLU THR VAL ASN SER GLU HIS LEU ASN HIS ASN GLU SEQRES 100 A 1352 SER ASN PHE THR PHE SER HIS LEU PRO GLY GLU ALA GLY SEQRES 101 A 1352 CYS ARG SER CYS PRO ASN SER PRO GLN SER CYS ARG SER SEQRES 102 A 1352 ILE MET ARG SER LYS CYS GLY THR GLU ASP CYS GLN THR SEQRES 103 A 1352 PRO ASN LEU GLU ALA ASN VAL PRO ALA VAL PRO THR HIS SEQRES 104 A 1352 SER ASP LEU SER GLY GLU SER LEU LEU ILE LYS THR LEU HET NAG A1601 14 HET NAG A1602 14 HET NAG A1603 14 HET NAG A1604 14 HET NAG A1605 14 HET Y01 A1606 35 HET Y01 A1607 35 HET Y01 A1608 35 HET Y01 A1609 35 HET Y01 A1610 35 HET Y01 A1611 35 HET Y01 A1612 35 HET Y01 A1613 35 HET Y01 A1614 35 HET Y01 A1615 35 HET Y01 A1616 35 HET Y01 A1617 35 HET Y01 A1618 35 HET Y01 A1619 35 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM Y01 CHOLESTEROL HEMISUCCINATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 7 Y01 14(C31 H50 O4) HELIX 1 AA1 SER A 179 TRP A 187 1 9 HELIX 2 AA2 TRP A 187 VAL A 209 1 23 HELIX 3 AA3 THR A 227 THR A 243 1 17 HELIX 4 AA4 LYS A 255 SER A 263 1 9 HELIX 5 AA5 ASN A 314 ILE A 329 1 16 HELIX 6 AA6 GLN A 334 CYS A 339 1 6 HELIX 7 AA7 THR A 352 ASN A 361 1 10 HELIX 8 AA8 SER A 365 ILE A 369 5 5 HELIX 9 AA9 VAL A 370 GLY A 391 1 22 HELIX 10 AB1 PRO A 414 LYS A 419 5 6 HELIX 11 AB2 ASN A 421 LEU A 430 1 10 HELIX 12 AB3 GLY A 460 SER A 462 5 3 HELIX 13 AB4 MET A 463 PHE A 471 1 9 HELIX 14 AB5 LEU A 494 THR A 503 1 10 HELIX 15 AB6 THR A 503 LYS A 522 1 20 HELIX 16 AB7 MET A 524 VAL A 547 1 24 HELIX 17 AB8 PHE A 556 LYS A 587 1 32 HELIX 18 AB9 GLU A 591 ASN A 621 1 31 HELIX 19 AC1 TYR A 622 SER A 624 5 3 HELIX 20 AC2 ILE A 626 LEU A 662 1 37 HELIX 21 AC3 LEU A 663 ILE A 665 5 3 HELIX 22 AC4 TRP A 682 LYS A 706 1 25 HELIX 23 AC5 LYS A 706 PHE A 715 1 10 HELIX 24 AC6 PHE A 715 VAL A 736 1 22 HELIX 25 AC7 GLU A 746 PHE A 750 5 5 HELIX 26 AC8 HIS A 757 GLU A 765 1 9 HELIX 27 AC9 PHE A 766 LEU A 769 5 4 HELIX 28 AD1 PHE A 770 HIS A 777 1 8 HELIX 29 AD2 SER A 818 GLN A 835 1 18 HELIX 30 AD3 CYS A 849 GLN A 861 1 13 HELIX 31 AD4 LYS A 880 LEU A 895 1 16 HELIX 32 AD5 ALA A 934 SER A 954 1 21 HELIX 33 AD6 GLY A 959 GLY A 963 5 5 HELIX 34 AD7 LEU A 969 TRP A 1002 1 34 HELIX 35 AD8 ASN A 1003 LEU A 1028 1 26 HELIX 36 AD9 ASN A 1033 ALA A 1061 1 29 HELIX 37 AE1 ASP A 1065 MET A 1095 1 31 HELIX 38 AE2 VAL A 1100 PHE A 1123 1 24 HELIX 39 AE3 PHE A 1123 GLY A 1133 1 11 HELIX 40 AE4 GLY A 1136 GLN A 1140 5 5 SHEET 1 AA1 3 SER A 451 GLU A 458 0 SHEET 2 AA1 3 TYR A 299 ALA A 305 -1 N SER A 300 O SER A 455 SHEET 3 AA1 3 THR A 482 GLU A 487 -1 O GLY A 485 N VAL A 303 SHEET 1 AA2 4 GLY A 909 PHE A 912 0 SHEET 2 AA2 4 ILE A 918 LEU A 930 -1 O VAL A 922 N GLY A 909 SHEET 3 AA2 4 HIS A 782 TRP A 789 -1 N VAL A 787 O LEU A 923 SHEET 4 AA2 4 TRP A 964 VAL A 966 -1 O TRP A 964 N ILE A 788 SSBOND 1 CYS A 292 CYS A 348 1555 1555 2.04 SSBOND 2 CYS A 322 CYS A 366 1555 1555 2.04 SSBOND 3 CYS A 339 CYS A 347 1555 1555 2.03 SSBOND 4 CYS A 384 CYS A 417 1555 1555 2.02 SSBOND 5 CYS A 397 CYS A 410 1555 1555 2.03 SSBOND 6 CYS A 829 CYS A 849 1555 1555 2.02 SSBOND 7 CYS A 863 CYS A 872 1555 1555 2.02 SSBOND 8 CYS A 871 CYS A 887 1555 1555 2.03 SSBOND 9 CYS A 1127 CYS A 1131 1555 1555 2.10 LINK ND2 ASN A 362 C1 NAG A1605 1555 1555 1.45 LINK ND2 ASN A 475 C1 NAG A1601 1555 1555 1.44 LINK ND2 ASN A 834 C1 NAG A1602 1555 1555 1.44 LINK ND2 ASN A 915 C1 NAG A1603 1555 1555 1.45 CISPEP 1 ASN A 737 PRO A 738 0 -19.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000