HEADER HYDROLASE/HYDROLASE INHIBITOR 05-AUG-21 7RPZ TITLE KRAS G12D IN COMPLEX WITH MRTX-1133 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2B OF GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ONCOPROTEIN, G12D, GDP, GTPASE, KRAS4B, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.J.GUNN,N.C.THOMAS,W.XIAOLUN,J.D.LAWSON,M.A.MARX REVDAT 3 18-OCT-23 7RPZ 1 REMARK REVDAT 2 09-MAR-22 7RPZ 1 JRNL REVDAT 1 22-DEC-21 7RPZ 0 JRNL AUTH X.WANG,S.ALLEN,J.F.BLAKE,V.BOWCUT,D.M.BRIERE,A.CALINISAN, JRNL AUTH 2 J.R.DAHLKE,J.B.FELL,J.P.FISCHER,R.J.GUNN,J.HALLIN,J.LAGUER, JRNL AUTH 3 J.D.LAWSON,J.MEDWID,B.NEWHOUSE,P.NGUYEN,J.M.O'LEARY,P.OLSON, JRNL AUTH 4 S.PAJK,L.RAHBAEK,M.RODRIGUEZ,C.R.SMITH,T.P.TANG,N.C.THOMAS, JRNL AUTH 5 D.VANDERPOOL,G.P.VIGERS,J.G.CHRISTENSEN,M.A.MARX JRNL TITL IDENTIFICATION OF MRTX1133, A NONCOVALENT, POTENT, AND JRNL TITL 2 SELECTIVE KRAS G12D INHIBITOR. JRNL REF J.MED.CHEM. V. 65 3123 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 34889605 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01688 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 45096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.2700 - 2.6000 0.98 2767 148 0.1626 0.1938 REMARK 3 2 2.6000 - 2.2700 0.98 2741 154 0.1579 0.1448 REMARK 3 3 2.2700 - 2.0600 0.99 2741 138 0.1449 0.1880 REMARK 3 4 2.0600 - 1.9100 0.96 2663 126 0.1407 0.1713 REMARK 3 5 1.9100 - 1.8000 0.97 2707 135 0.1485 0.1668 REMARK 3 6 1.8000 - 1.7100 0.98 2724 131 0.1457 0.1770 REMARK 3 7 1.7100 - 1.6400 0.98 2690 117 0.1397 0.1741 REMARK 3 8 1.6400 - 1.5700 0.99 2694 164 0.1413 0.1818 REMARK 3 9 1.5700 - 1.5200 0.99 2676 130 0.1378 0.1633 REMARK 3 10 1.5200 - 1.4700 0.99 2712 155 0.1444 0.1783 REMARK 3 11 1.4700 - 1.4300 0.94 2579 129 0.1545 0.1899 REMARK 3 12 1.4300 - 1.3900 0.96 2627 140 0.1541 0.2021 REMARK 3 13 1.3900 - 1.3600 0.97 2603 137 0.1557 0.2002 REMARK 3 14 1.3600 - 1.3300 0.98 2671 132 0.1522 0.1957 REMARK 3 15 1.3300 - 1.3000 0.93 2567 116 0.1608 0.1725 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.102 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1448 REMARK 3 ANGLE : 1.618 1972 REMARK 3 CHIRALITY : 0.103 218 REMARK 3 PLANARITY : 0.014 244 REMARK 3 DIHEDRAL : 21.936 547 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7018 -7.3001 -13.7249 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.0671 REMARK 3 T33: 0.0739 T12: -0.0064 REMARK 3 T13: 0.0113 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.9481 L22: 1.3322 REMARK 3 L33: 1.3150 L12: 0.1106 REMARK 3 L13: -0.4993 L23: -0.1812 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: -0.0168 S13: -0.0808 REMARK 3 S21: 0.0204 S22: 0.0400 S23: 0.0456 REMARK 3 S31: 0.1728 S32: -0.0358 S33: 0.0386 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5611 -12.3116 -13.8871 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.0894 REMARK 3 T33: 0.1144 T12: 0.0013 REMARK 3 T13: 0.0253 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.1669 L22: 0.9728 REMARK 3 L33: 1.6795 L12: 0.0086 REMARK 3 L13: -0.7122 L23: -0.1765 REMARK 3 S TENSOR REMARK 3 S11: -0.1335 S12: -0.0687 S13: -0.2009 REMARK 3 S21: 0.0151 S22: 0.0582 S23: -0.0660 REMARK 3 S31: 0.1787 S32: 0.0132 S33: 0.1012 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3818 0.2831 -27.5219 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.1696 REMARK 3 T33: 0.0998 T12: -0.0360 REMARK 3 T13: -0.0099 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.9561 L22: 1.7634 REMARK 3 L33: 2.0154 L12: -0.0595 REMARK 3 L13: -0.0285 L23: -0.3910 REMARK 3 S TENSOR REMARK 3 S11: -0.1182 S12: 0.3512 S13: 0.0136 REMARK 3 S21: -0.5758 S22: 0.0615 S23: 0.0615 REMARK 3 S31: 0.2996 S32: -0.2996 S33: -0.0332 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2901 6.5523 -15.2623 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.0556 REMARK 3 T33: 0.0815 T12: 0.0082 REMARK 3 T13: 0.0195 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.5456 L22: 1.3306 REMARK 3 L33: 1.7992 L12: -0.1670 REMARK 3 L13: -0.1680 L23: -0.2648 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0354 S13: 0.1147 REMARK 3 S21: -0.0543 S22: 0.0572 S23: -0.0210 REMARK 3 S31: -0.1628 S32: -0.0397 S33: -0.0437 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5801 4.5370 -12.6126 REMARK 3 T TENSOR REMARK 3 T11: 0.1139 T22: 0.1161 REMARK 3 T33: 0.1577 T12: 0.0134 REMARK 3 T13: -0.0112 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 1.0051 L22: 1.3888 REMARK 3 L33: 2.7426 L12: 0.6795 REMARK 3 L13: -0.7902 L23: 0.6430 REMARK 3 S TENSOR REMARK 3 S11: -0.1129 S12: 0.1367 S13: 0.4423 REMARK 3 S21: -0.1200 S22: 0.0588 S23: 0.2260 REMARK 3 S31: -0.3227 S32: -0.3795 S33: 0.0347 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1028 1.1605 -4.3922 REMARK 3 T TENSOR REMARK 3 T11: 0.0772 T22: 0.0999 REMARK 3 T33: 0.0643 T12: 0.0104 REMARK 3 T13: 0.0103 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.8696 L22: 0.9137 REMARK 3 L33: 1.0933 L12: -0.1298 REMARK 3 L13: -0.1055 L23: 0.0346 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.2131 S13: 0.0980 REMARK 3 S21: 0.0613 S22: 0.0232 S23: -0.0300 REMARK 3 S31: -0.0440 S32: 0.0263 S33: -0.0281 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000258604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45402 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UTO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE PH 4.2,29% PEG REMARK 280 8K, 200 MM AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.93400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.80550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.87850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.80550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.93400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.87850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 MET A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 422 O HOH A 490 1.99 REMARK 500 O HOH A 303 O HOH A 320 2.04 REMARK 500 O HOH A 389 O HOH A 498 2.10 REMARK 500 O HOH A 410 O HOH A 518 2.11 REMARK 500 O HOH A 555 O HOH A 556 2.14 REMARK 500 O HOH A 302 O HOH A 409 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 391 O HOH A 484 3544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 38 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 149 -1.30 79.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 569 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 571 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 573 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 574 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 575 DISTANCE = 6.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O3B 93.1 REMARK 620 3 HOH A 322 O 84.9 93.1 REMARK 620 4 HOH A 326 O 91.3 87.6 176.2 REMARK 620 5 HOH A 329 O 175.3 89.9 91.3 92.5 REMARK 620 6 HOH A 373 O 90.6 172.7 93.5 86.1 86.9 REMARK 620 N 1 2 3 4 5 DBREF 7RPZ A 0 169 UNP P01116-2 RASK-2_HUMAN 1 169 SEQADV 7RPZ GLY A -1 UNP P01116-2 EXPRESSION TAG SEQADV 7RPZ ASP A 12 UNP P01116-2 GLY 12 ENGINEERED MUTATION SEQADV 7RPZ SER A 51 UNP P01116-2 CYS 51 CONFLICT SEQADV 7RPZ LEU A 80 UNP P01116-2 CYS 80 CONFLICT SEQADV 7RPZ SER A 118 UNP P01116-2 CYS 118 CONFLICT SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA ASP SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS HET GDP A 201 28 HET 6IC A 202 44 HET MG A 203 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM 6IC 4-(4-[(1R,5S)-3,8-DIAZABICYCLO[3.2.1]OCTAN-3-YL]-8- HETNAM 2 6IC FLUORO-2-{[(2R,4R,7AS)-2-FLUOROTETRAHYDRO-1H- HETNAM 3 6IC PYRROLIZIN-7A(5H)-YL]METHOXY}PYRIDO[4,3-D]PYRIMIDIN-7- HETNAM 4 6IC YL)-5-ETHYNYL-6-FLUORONAPHTHALEN-2-OL HETNAM MG MAGNESIUM ION HETSYN 6IC MRTX-1133 FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 6IC C33 H31 F3 N6 O2 FORMUL 4 MG MG 2+ FORMUL 5 HOH *275(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 THR A 74 1 10 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LYS A 169 1 19 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O SER A 51 N VAL A 44 SHEET 3 AA1 6 GLU A 3 VAL A 9 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 203 1555 1555 2.08 LINK O3B GDP A 201 MG MG A 203 1555 1555 2.03 LINK MG MG A 203 O HOH A 322 1555 1555 2.05 LINK MG MG A 203 O HOH A 326 1555 1555 2.12 LINK MG MG A 203 O HOH A 329 1555 1555 2.12 LINK MG MG A 203 O HOH A 373 1555 1555 2.14 CRYST1 39.868 51.757 89.611 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025083 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011159 0.00000