HEADER RNA BINDING PROTEIN 17-AUG-21 7RUO TITLE CRYSTAL STRUCTURE OF HUMAN UTP15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UTP15; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS WD-REPEAT, WDR, UTP15, SGC, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.DEHGHANI-TAFTI,A.DONG,H.ZENG,A.HUTCHINSON,A.SEITOVA,P.LOPPNAU, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,L.HALABELIAN,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 2 22-MAY-24 7RUO 1 REMARK REVDAT 1 10-NOV-21 7RUO 0 JRNL AUTH S.DEHGHANI-TAFTI,A.DONG,H.ZENG,A.HUTCHINSON,A.SEITOVA, JRNL AUTH 2 P.LOPPNAU,C.H.ARROWSMITH,A.M.EDWARDS,L.HALABELIAN, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF HUMAN UTP15 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 54327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2896 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3855 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 224 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.84000 REMARK 3 B12 (A**2) : -0.17000 REMARK 3 B13 (A**2) : -0.37000 REMARK 3 B23 (A**2) : -0.31000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4842 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4404 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6587 ; 1.490 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10205 ; 1.271 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 617 ; 7.908 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;31.895 ;21.770 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 787 ;13.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.158 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 631 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5476 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1055 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7RUO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000259056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57233 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 55.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M (NH4)2SO4, 0.2M SODIUM ACETATE, REMARK 280 0.1M HEPES PH7.5, 5% MPD, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 TYR A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 GLN A 10 REMARK 465 THR A 11 REMARK 465 TYR A 12 REMARK 465 PRO A 13 REMARK 465 ILE A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 GLU A 17 REMARK 465 LYS A 18 REMARK 465 SER A 320 REMARK 465 GLU A 321 REMARK 465 ALA A 322 REMARK 465 LYS A 323 REMARK 465 LYS A 324 REMARK 465 GLU A 325 REMARK 465 SER A 326 REMARK 465 LEU A 327 REMARK 465 PRO A 328 REMARK 465 ARG A 329 REMARK 465 ARG A 330 REMARK 465 ARG A 331 REMARK 465 ARG A 332 REMARK 465 PRO A 333 REMARK 465 ALA A 334 REMARK 465 TYR A 335 REMARK 465 ARG A 336 REMARK 465 THR A 337 REMARK 465 PHE A 338 REMARK 465 ILE A 339 REMARK 465 LYS A 340 REMARK 465 GLY A 341 REMARK 465 LYS A 342 REMARK 465 ASN A 343 REMARK 465 TYR A 344 REMARK 465 MET A 345 REMARK 465 LYS A 346 REMARK 465 GLN A 347 REMARK 465 ARG A 348 REMARK 465 ASP A 349 REMARK 465 ASP A 350 REMARK 465 ILE A 351 REMARK 465 LEU A 352 REMARK 465 ILE A 353 REMARK 465 ASN A 354 REMARK 465 ARG A 355 REMARK 465 PRO A 356 REMARK 465 ALA A 357 REMARK 465 LYS A 358 REMARK 465 LYS A 359 REMARK 465 HIS A 360 REMARK 465 LEU A 361 REMARK 465 GLU A 362 REMARK 465 LEU A 363 REMARK 465 TYR A 364 REMARK 465 ASP A 365 REMARK 465 ARG A 366 REMARK 465 ASP A 367 REMARK 465 LEU A 368 REMARK 465 LYS A 369 REMARK 465 HIS A 370 REMARK 465 MET B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 TYR B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 VAL B 7 REMARK 465 ALA B 8 REMARK 465 ILE B 9 REMARK 465 GLN B 10 REMARK 465 THR B 11 REMARK 465 TYR B 12 REMARK 465 PRO B 13 REMARK 465 ILE B 14 REMARK 465 LEU B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 17 REMARK 465 LYS B 18 REMARK 465 ILE B 19 REMARK 465 SER B 320 REMARK 465 GLU B 321 REMARK 465 ALA B 322 REMARK 465 LYS B 323 REMARK 465 LYS B 324 REMARK 465 GLU B 325 REMARK 465 SER B 326 REMARK 465 LEU B 327 REMARK 465 PRO B 328 REMARK 465 ARG B 329 REMARK 465 ARG B 330 REMARK 465 ARG B 331 REMARK 465 ARG B 332 REMARK 465 PRO B 333 REMARK 465 ALA B 334 REMARK 465 TYR B 335 REMARK 465 ARG B 336 REMARK 465 THR B 337 REMARK 465 PHE B 338 REMARK 465 ILE B 339 REMARK 465 LYS B 340 REMARK 465 GLY B 341 REMARK 465 LYS B 342 REMARK 465 ASN B 343 REMARK 465 TYR B 344 REMARK 465 MET B 345 REMARK 465 LYS B 346 REMARK 465 GLN B 347 REMARK 465 ARG B 348 REMARK 465 ASP B 349 REMARK 465 ASP B 350 REMARK 465 ILE B 351 REMARK 465 LEU B 352 REMARK 465 ILE B 353 REMARK 465 ASN B 354 REMARK 465 ARG B 355 REMARK 465 PRO B 356 REMARK 465 ALA B 357 REMARK 465 LYS B 358 REMARK 465 LYS B 359 REMARK 465 HIS B 360 REMARK 465 LEU B 361 REMARK 465 GLU B 362 REMARK 465 LEU B 363 REMARK 465 TYR B 364 REMARK 465 ASP B 365 REMARK 465 ARG B 366 REMARK 465 ASP B 367 REMARK 465 LEU B 368 REMARK 465 LYS B 369 REMARK 465 HIS B 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 19 CG1 CG2 CD1 REMARK 470 LEU A 24 CD1 CD2 REMARK 470 GLU A 71 CD OE1 OE2 REMARK 470 ARG A 112 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 ARG B 67 NE CZ NH1 NH2 REMARK 470 LYS B 74 CE NZ REMARK 470 LYS B 161 CD CE NZ REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 GLU B 198 CG CD OE1 OE2 REMARK 470 GLU B 204 CD OE1 OE2 REMARK 470 LYS B 245 NZ REMARK 470 LYS B 281 CE NZ REMARK 470 GLU B 302 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1189 O HOH A 1240 2.03 REMARK 500 NH1 ARG A 61 O HOH A 1101 2.12 REMARK 500 NH1 ARG B 195 O HOH B 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 51 30.22 -89.95 REMARK 500 SER A 59 -124.84 51.63 REMARK 500 LYS A 80 -100.06 -135.05 REMARK 500 LYS A 134 -5.76 84.24 REMARK 500 TYR A 144 3.42 80.66 REMARK 500 LYS A 161 71.19 -112.79 REMARK 500 HIS A 187 7.58 87.63 REMARK 500 PRO B 51 31.65 -93.25 REMARK 500 SER B 59 -122.83 55.07 REMARK 500 SER B 59 -120.33 55.07 REMARK 500 LYS B 80 -100.57 -133.98 REMARK 500 ARG B 112 -70.40 -77.01 REMARK 500 LYS B 134 -8.75 85.59 REMARK 500 TYR B 144 1.34 84.22 REMARK 500 LYS B 161 77.11 -117.69 REMARK 500 HIS B 187 6.19 87.24 REMARK 500 LYS B 236 34.25 -99.34 REMARK 500 ARG B 270 11.67 80.56 REMARK 500 HIS B 299 124.07 -34.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 7RUO A 1 370 UNP Q8TED0 UTP15_HUMAN 1 370 DBREF 7RUO B 1 370 UNP Q8TED0 UTP15_HUMAN 1 370 SEQADV 7RUO MET A -17 UNP Q8TED0 INITIATING METHIONINE SEQADV 7RUO HIS A -16 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO HIS A -15 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO HIS A -14 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO HIS A -13 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO HIS A -12 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO HIS A -11 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO SER A -10 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO SER A -9 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO GLY A -8 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO ARG A -7 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO GLU A -6 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO ASN A -5 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO LEU A -4 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO TYR A -3 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO PHE A -2 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO GLN A -1 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO GLY A 0 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO MET B -17 UNP Q8TED0 INITIATING METHIONINE SEQADV 7RUO HIS B -16 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO HIS B -15 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO HIS B -14 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO HIS B -13 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO HIS B -12 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO HIS B -11 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO SER B -10 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO SER B -9 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO GLY B -8 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO ARG B -7 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO GLU B -6 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO ASN B -5 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO LEU B -4 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO TYR B -3 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO PHE B -2 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO GLN B -1 UNP Q8TED0 EXPRESSION TAG SEQADV 7RUO GLY B 0 UNP Q8TED0 EXPRESSION TAG SEQRES 1 A 388 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 388 LEU TYR PHE GLN GLY MET ALA GLY TYR LYS PRO VAL ALA SEQRES 3 A 388 ILE GLN THR TYR PRO ILE LEU GLY GLU LYS ILE THR GLN SEQRES 4 A 388 ASP THR LEU TYR TRP ASN ASN TYR LYS THR PRO VAL GLN SEQRES 5 A 388 ILE LYS GLU PHE GLY ALA VAL SER LYS VAL ASP PHE SER SEQRES 6 A 388 PRO GLN PRO PRO TYR ASN TYR ALA VAL THR ALA SER SER SEQRES 7 A 388 ARG ILE HIS ILE TYR GLY ARG TYR SER GLN GLU PRO ILE SEQRES 8 A 388 LYS THR PHE SER ARG PHE LYS ASP THR ALA TYR CYS ALA SEQRES 9 A 388 THR PHE ARG GLN ASP GLY ARG LEU LEU VAL ALA GLY SER SEQRES 10 A 388 GLU ASP GLY GLY VAL GLN LEU PHE ASP ILE SER GLY ARG SEQRES 11 A 388 ALA PRO LEU ARG GLN PHE GLU GLY HIS THR LYS ALA VAL SEQRES 12 A 388 HIS THR VAL ASP PHE THR ALA ASP LYS TYR HIS VAL VAL SEQRES 13 A 388 SER GLY ALA ASP ASP TYR THR VAL LYS LEU TRP ASP ILE SEQRES 14 A 388 PRO ASN SER LYS GLU ILE LEU THR PHE LYS GLU HIS SER SEQRES 15 A 388 ASP TYR VAL ARG CYS GLY CYS ALA SER LYS LEU ASN PRO SEQRES 16 A 388 ASP LEU PHE ILE THR GLY SER TYR ASP HIS THR VAL LYS SEQRES 17 A 388 MET PHE ASP ALA ARG THR SER GLU SER VAL LEU SER VAL SEQRES 18 A 388 GLU HIS GLY GLN PRO VAL GLU SER VAL LEU LEU PHE PRO SEQRES 19 A 388 SER GLY GLY LEU LEU VAL SER ALA GLY GLY ARG TYR VAL SEQRES 20 A 388 LYS VAL TRP ASP MET LEU LYS GLY GLY GLN LEU LEU VAL SEQRES 21 A 388 SER LEU LYS ASN HIS HIS LYS THR VAL THR CYS LEU CYS SEQRES 22 A 388 LEU SER SER SER GLY GLN ARG LEU LEU SER GLY SER LEU SEQRES 23 A 388 ASP ARG LYS VAL LYS VAL TYR SER THR THR SER TYR LYS SEQRES 24 A 388 VAL VAL HIS SER PHE ASP TYR ALA ALA SER ILE LEU SER SEQRES 25 A 388 LEU ALA LEU ALA HIS GLU ASP GLU THR ILE VAL VAL GLY SEQRES 26 A 388 MET THR ASN GLY ILE LEU SER VAL LYS HIS ARG LYS SER SEQRES 27 A 388 GLU ALA LYS LYS GLU SER LEU PRO ARG ARG ARG ARG PRO SEQRES 28 A 388 ALA TYR ARG THR PHE ILE LYS GLY LYS ASN TYR MET LYS SEQRES 29 A 388 GLN ARG ASP ASP ILE LEU ILE ASN ARG PRO ALA LYS LYS SEQRES 30 A 388 HIS LEU GLU LEU TYR ASP ARG ASP LEU LYS HIS SEQRES 1 B 388 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 388 LEU TYR PHE GLN GLY MET ALA GLY TYR LYS PRO VAL ALA SEQRES 3 B 388 ILE GLN THR TYR PRO ILE LEU GLY GLU LYS ILE THR GLN SEQRES 4 B 388 ASP THR LEU TYR TRP ASN ASN TYR LYS THR PRO VAL GLN SEQRES 5 B 388 ILE LYS GLU PHE GLY ALA VAL SER LYS VAL ASP PHE SER SEQRES 6 B 388 PRO GLN PRO PRO TYR ASN TYR ALA VAL THR ALA SER SER SEQRES 7 B 388 ARG ILE HIS ILE TYR GLY ARG TYR SER GLN GLU PRO ILE SEQRES 8 B 388 LYS THR PHE SER ARG PHE LYS ASP THR ALA TYR CYS ALA SEQRES 9 B 388 THR PHE ARG GLN ASP GLY ARG LEU LEU VAL ALA GLY SER SEQRES 10 B 388 GLU ASP GLY GLY VAL GLN LEU PHE ASP ILE SER GLY ARG SEQRES 11 B 388 ALA PRO LEU ARG GLN PHE GLU GLY HIS THR LYS ALA VAL SEQRES 12 B 388 HIS THR VAL ASP PHE THR ALA ASP LYS TYR HIS VAL VAL SEQRES 13 B 388 SER GLY ALA ASP ASP TYR THR VAL LYS LEU TRP ASP ILE SEQRES 14 B 388 PRO ASN SER LYS GLU ILE LEU THR PHE LYS GLU HIS SER SEQRES 15 B 388 ASP TYR VAL ARG CYS GLY CYS ALA SER LYS LEU ASN PRO SEQRES 16 B 388 ASP LEU PHE ILE THR GLY SER TYR ASP HIS THR VAL LYS SEQRES 17 B 388 MET PHE ASP ALA ARG THR SER GLU SER VAL LEU SER VAL SEQRES 18 B 388 GLU HIS GLY GLN PRO VAL GLU SER VAL LEU LEU PHE PRO SEQRES 19 B 388 SER GLY GLY LEU LEU VAL SER ALA GLY GLY ARG TYR VAL SEQRES 20 B 388 LYS VAL TRP ASP MET LEU LYS GLY GLY GLN LEU LEU VAL SEQRES 21 B 388 SER LEU LYS ASN HIS HIS LYS THR VAL THR CYS LEU CYS SEQRES 22 B 388 LEU SER SER SER GLY GLN ARG LEU LEU SER GLY SER LEU SEQRES 23 B 388 ASP ARG LYS VAL LYS VAL TYR SER THR THR SER TYR LYS SEQRES 24 B 388 VAL VAL HIS SER PHE ASP TYR ALA ALA SER ILE LEU SER SEQRES 25 B 388 LEU ALA LEU ALA HIS GLU ASP GLU THR ILE VAL VAL GLY SEQRES 26 B 388 MET THR ASN GLY ILE LEU SER VAL LYS HIS ARG LYS SER SEQRES 27 B 388 GLU ALA LYS LYS GLU SER LEU PRO ARG ARG ARG ARG PRO SEQRES 28 B 388 ALA TYR ARG THR PHE ILE LYS GLY LYS ASN TYR MET LYS SEQRES 29 B 388 GLN ARG ASP ASP ILE LEU ILE ASN ARG PRO ALA LYS LYS SEQRES 30 B 388 HIS LEU GLU LEU TYR ASP ARG ASP LEU LYS HIS HET UNX A1001 1 HET UNX A1002 1 HET UNX A1003 1 HET UNX B 401 1 HET UNX B 402 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 UNX 5(X) FORMUL 8 HOH *290(H2 O) HELIX 1 AA1 THR A 20 ASN A 28 1 9 HELIX 2 AA2 HIS A 299 ASP A 301 5 3 HELIX 3 AA3 GLN B 21 ASN B 27 1 7 HELIX 4 AA4 HIS B 299 ASP B 301 5 3 SHEET 1 AA1 4 VAL A 33 LYS A 36 0 SHEET 2 AA1 4 ILE A 312 HIS A 317 -1 O LEU A 313 N ILE A 35 SHEET 3 AA1 4 THR A 303 MET A 308 -1 N VAL A 306 O SER A 314 SHEET 4 AA1 4 ILE A 292 LEU A 297 -1 N ALA A 296 O VAL A 305 SHEET 1 AA2 4 VAL A 41 PHE A 46 0 SHEET 2 AA2 4 TYR A 54 ALA A 58 -1 O ALA A 55 N ASP A 45 SHEET 3 AA2 4 ARG A 61 TYR A 65 -1 O HIS A 63 N VAL A 56 SHEET 4 AA2 4 LYS A 74 PHE A 76 -1 O PHE A 76 N ILE A 62 SHEET 1 AA3 4 ALA A 83 PHE A 88 0 SHEET 2 AA3 4 LEU A 94 SER A 99 -1 O GLY A 98 N TYR A 84 SHEET 3 AA3 4 VAL A 104 ASP A 108 -1 O PHE A 107 N LEU A 95 SHEET 4 AA3 4 ARG A 116 PHE A 118 -1 O PHE A 118 N VAL A 104 SHEET 1 AA4 4 VAL A 125 PHE A 130 0 SHEET 2 AA4 4 HIS A 136 ALA A 141 -1 O VAL A 138 N ASP A 129 SHEET 3 AA4 4 VAL A 146 ASP A 150 -1 O TRP A 149 N VAL A 137 SHEET 4 AA4 4 LYS A 155 PHE A 160 -1 O ILE A 157 N LEU A 148 SHEET 1 AA5 4 VAL A 167 ALA A 172 0 SHEET 2 AA5 4 LEU A 179 SER A 184 -1 O ILE A 181 N CYS A 171 SHEET 3 AA5 4 THR A 188 ASP A 193 -1 O PHE A 192 N PHE A 180 SHEET 4 AA5 4 LEU A 201 GLU A 204 -1 O LEU A 201 N MET A 191 SHEET 1 AA6 4 SER A 211 LEU A 214 0 SHEET 2 AA6 4 LEU A 220 GLY A 225 -1 O VAL A 222 N LEU A 213 SHEET 3 AA6 4 TYR A 228 ASP A 233 -1 O LYS A 230 N SER A 223 SHEET 4 AA6 4 GLN A 239 LEU A 244 -1 O GLN A 239 N ASP A 233 SHEET 1 AA7 4 VAL A 251 LEU A 256 0 SHEET 2 AA7 4 ARG A 262 SER A 267 -1 O LEU A 264 N CYS A 255 SHEET 3 AA7 4 LYS A 271 SER A 276 -1 O TYR A 275 N LEU A 263 SHEET 4 AA7 4 VAL A 282 ASP A 287 -1 O VAL A 283 N VAL A 274 SHEET 1 AA8 4 VAL B 33 LYS B 36 0 SHEET 2 AA8 4 ILE B 312 HIS B 317 -1 O VAL B 315 N VAL B 33 SHEET 3 AA8 4 THR B 303 MET B 308 -1 N VAL B 306 O SER B 314 SHEET 4 AA8 4 ILE B 292 LEU B 297 -1 N LEU B 293 O GLY B 307 SHEET 1 AA9 4 VAL B 41 PHE B 46 0 SHEET 2 AA9 4 TYR B 54 ALA B 58 -1 O THR B 57 N LYS B 43 SHEET 3 AA9 4 ARG B 61 TYR B 65 -1 O HIS B 63 N VAL B 56 SHEET 4 AA9 4 LYS B 74 PHE B 76 -1 O PHE B 76 N ILE B 62 SHEET 1 AB1 4 ALA B 83 PHE B 88 0 SHEET 2 AB1 4 LEU B 94 SER B 99 -1 O GLY B 98 N TYR B 84 SHEET 3 AB1 4 VAL B 104 ASP B 108 -1 O PHE B 107 N LEU B 95 SHEET 4 AB1 4 ARG B 116 PHE B 118 -1 O PHE B 118 N VAL B 104 SHEET 1 AB2 4 VAL B 125 PHE B 130 0 SHEET 2 AB2 4 HIS B 136 ALA B 141 -1 O VAL B 138 N ASP B 129 SHEET 3 AB2 4 VAL B 146 ASP B 150 -1 O TRP B 149 N VAL B 137 SHEET 4 AB2 4 LYS B 155 PHE B 160 -1 O ILE B 157 N LEU B 148 SHEET 1 AB3 4 VAL B 167 ALA B 172 0 SHEET 2 AB3 4 LEU B 179 SER B 184 -1 O ILE B 181 N CYS B 171 SHEET 3 AB3 4 THR B 188 ASP B 193 -1 O PHE B 192 N PHE B 180 SHEET 4 AB3 4 LEU B 201 GLU B 204 -1 O LEU B 201 N MET B 191 SHEET 1 AB4 4 SER B 211 LEU B 214 0 SHEET 2 AB4 4 LEU B 220 GLY B 225 -1 O VAL B 222 N LEU B 213 SHEET 3 AB4 4 TYR B 228 ASP B 233 -1 O LYS B 230 N SER B 223 SHEET 4 AB4 4 GLN B 239 LEU B 244 -1 O GLN B 239 N ASP B 233 SHEET 1 AB5 4 VAL B 251 LEU B 256 0 SHEET 2 AB5 4 ARG B 262 SER B 267 -1 O LEU B 264 N CYS B 255 SHEET 3 AB5 4 LYS B 271 SER B 276 -1 O TYR B 275 N LEU B 263 SHEET 4 AB5 4 VAL B 282 ASP B 287 -1 O VAL B 283 N VAL B 274 CISPEP 1 PRO A 50 PRO A 51 0 3.68 CISPEP 2 PRO B 50 PRO B 51 0 2.50 CRYST1 58.327 59.085 61.868 90.11 66.82 62.87 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017145 -0.008784 -0.009524 0.00000 SCALE2 0.000000 0.019017 0.004323 0.00000 SCALE3 0.000000 0.000000 0.018031 0.00000