HEADER DNA BINDING PROTEIN/DNA 18-AUG-21 7RVA TITLE UPDATED CRYSTAL STRUCTURE OF REPLICATION INITIATOR PROTEIN REPE54. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*T)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*T)- COMPND 10 3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: UNK-UNK-UNK; COMPND 21 CHAIN: D; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: UNK-UNK-UNK-UNK; COMPND 25 CHAIN: E; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: REPE, E, REP, ECOK12F045; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 18 ORGANISM_TAXID: 83333; SOURCE 19 STRAIN: K12; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 5; SOURCE 23 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 24 ORGANISM_TAXID: 83333; SOURCE 25 STRAIN: K12; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.WARD,C.D.SNOW REVDAT 3 18-OCT-23 7RVA 1 REMARK REVDAT 2 09-MAR-22 7RVA 1 JRNL REVDAT 1 01-SEP-21 7RVA 0 JRNL AUTH A.R.WARD,S.DMYTRIW,A.VAJAPAYAJULA,C.D.SNOW JRNL TITL STABILIZING DNA-PROTEIN CO-CRYSTALS VIA INTRA-CRYSTAL JRNL TITL 2 CHEMICAL LIGATION OF THE DNA JRNL REF CRYSTALS V. 12 2022 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST12010049 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 38499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7800 - 4.5500 0.96 2819 145 0.1446 0.1769 REMARK 3 2 4.5500 - 3.6100 0.95 2741 171 0.1349 0.1651 REMARK 3 3 3.6100 - 3.1600 0.97 2766 154 0.1627 0.2241 REMARK 3 4 3.1600 - 2.8700 0.98 2840 153 0.2199 0.2610 REMARK 3 5 2.8700 - 2.6600 0.99 2829 157 0.2473 0.3153 REMARK 3 6 2.6600 - 2.5100 0.99 2852 142 0.2478 0.3190 REMARK 3 7 2.5100 - 2.3800 0.99 2845 154 0.2520 0.2843 REMARK 3 8 2.3800 - 2.2800 0.91 2587 141 0.3073 0.3614 REMARK 3 9 2.2800 - 2.1900 0.85 2424 143 0.4192 0.4912 REMARK 3 10 2.1900 - 2.1100 0.96 2739 161 0.3049 0.3400 REMARK 3 11 2.1100 - 2.0500 0.99 2809 151 0.3089 0.3560 REMARK 3 12 2.0500 - 1.9900 0.96 2761 142 0.3380 0.4343 REMARK 3 13 1.9900 - 1.9500 0.58 1116 61 0.3575 0.3584 REMARK 3 14 1.9300 - 1.8900 0.97 2364 132 0.5760 0.5837 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.339 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.953 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2919 REMARK 3 ANGLE : 1.107 4130 REMARK 3 CHIRALITY : 0.058 447 REMARK 3 PLANARITY : 0.007 381 REMARK 3 DIHEDRAL : 24.951 692 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5964 -26.3545 13.3089 REMARK 3 T TENSOR REMARK 3 T11: 0.4249 T22: 0.4150 REMARK 3 T33: 0.6546 T12: 0.1674 REMARK 3 T13: -0.0045 T23: -0.0504 REMARK 3 L TENSOR REMARK 3 L11: 8.4122 L22: 6.7924 REMARK 3 L33: 2.8966 L12: -0.6292 REMARK 3 L13: 0.6136 L23: -0.8708 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: 0.8653 S13: -0.9891 REMARK 3 S21: 0.3880 S22: 0.1535 S23: 0.3902 REMARK 3 S31: 0.2975 S32: 0.0183 S33: -0.1355 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.1065 -4.8160 14.8444 REMARK 3 T TENSOR REMARK 3 T11: 0.4145 T22: 0.6200 REMARK 3 T33: 0.8828 T12: 0.1983 REMARK 3 T13: 0.0242 T23: 0.0774 REMARK 3 L TENSOR REMARK 3 L11: 2.9361 L22: 2.7855 REMARK 3 L33: 2.0609 L12: -2.1842 REMARK 3 L13: -1.9554 L23: 1.0920 REMARK 3 S TENSOR REMARK 3 S11: -0.2521 S12: 0.1690 S13: -0.5827 REMARK 3 S21: 0.2447 S22: 0.1232 S23: 0.8774 REMARK 3 S31: -0.2453 S32: -0.5717 S33: 0.1142 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.9405 4.1182 15.4343 REMARK 3 T TENSOR REMARK 3 T11: 0.5194 T22: 0.6787 REMARK 3 T33: 0.8402 T12: 0.3531 REMARK 3 T13: 0.0258 T23: 0.0868 REMARK 3 L TENSOR REMARK 3 L11: 3.0782 L22: 4.5058 REMARK 3 L33: 2.3511 L12: -1.0633 REMARK 3 L13: 2.6780 L23: -0.7072 REMARK 3 S TENSOR REMARK 3 S11: 0.3384 S12: 0.4313 S13: -0.3967 REMARK 3 S21: -0.5236 S22: -0.6555 S23: 0.2269 REMARK 3 S31: -0.1980 S32: 0.0894 S33: 0.2866 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.3030 -13.2227 15.9931 REMARK 3 T TENSOR REMARK 3 T11: 0.3962 T22: 0.4781 REMARK 3 T33: 1.0834 T12: 0.0778 REMARK 3 T13: 0.0806 T23: 0.0874 REMARK 3 L TENSOR REMARK 3 L11: 6.0241 L22: 9.1305 REMARK 3 L33: 9.9697 L12: -7.2691 REMARK 3 L13: -7.5418 L23: 8.6447 REMARK 3 S TENSOR REMARK 3 S11: -0.3885 S12: 0.2794 S13: -0.7949 REMARK 3 S21: 1.0050 S22: 0.3266 S23: 0.2458 REMARK 3 S31: 0.7651 S32: -0.2454 S33: 0.0805 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3970 -17.6681 12.9938 REMARK 3 T TENSOR REMARK 3 T11: 0.3354 T22: 0.4258 REMARK 3 T33: 0.5857 T12: 0.1252 REMARK 3 T13: 0.0945 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.2858 L22: 2.9575 REMARK 3 L33: 6.3139 L12: 0.7110 REMARK 3 L13: -0.0392 L23: 0.3430 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: 0.6805 S13: -0.4270 REMARK 3 S21: -0.0569 S22: -0.2595 S23: 0.7593 REMARK 3 S31: 0.4770 S32: 0.4115 S33: 0.2811 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9514 -32.4160 12.5752 REMARK 3 T TENSOR REMARK 3 T11: 0.5280 T22: 0.6264 REMARK 3 T33: 1.1113 T12: 0.2557 REMARK 3 T13: -0.0374 T23: -0.1383 REMARK 3 L TENSOR REMARK 3 L11: 8.2000 L22: 6.2910 REMARK 3 L33: 0.8641 L12: -2.3789 REMARK 3 L13: -2.4815 L23: 1.4963 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: 0.9213 S13: -1.3675 REMARK 3 S21: 0.5153 S22: 0.2597 S23: 0.1215 REMARK 3 S31: 0.7455 S32: 0.1700 S33: 0.0152 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7690 6.8953 13.0194 REMARK 3 T TENSOR REMARK 3 T11: 0.3975 T22: 0.3524 REMARK 3 T33: 0.4728 T12: 0.0846 REMARK 3 T13: 0.0339 T23: 0.1874 REMARK 3 L TENSOR REMARK 3 L11: 3.3126 L22: 2.0248 REMARK 3 L33: 2.2615 L12: -0.7555 REMARK 3 L13: -0.1944 L23: 0.5815 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: 0.3857 S13: 0.7134 REMARK 3 S21: -0.1370 S22: 0.0357 S23: 0.3142 REMARK 3 S31: -0.6230 S32: -0.0994 S33: -0.0595 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2488 7.4888 24.2185 REMARK 3 T TENSOR REMARK 3 T11: 0.3667 T22: 0.2898 REMARK 3 T33: 0.3299 T12: 0.0331 REMARK 3 T13: 0.1141 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.9118 L22: 4.2074 REMARK 3 L33: 5.3439 L12: 1.6064 REMARK 3 L13: 2.8741 L23: 0.6872 REMARK 3 S TENSOR REMARK 3 S11: -0.1085 S12: 0.0498 S13: 0.6311 REMARK 3 S21: 0.2145 S22: 0.1662 S23: -0.1586 REMARK 3 S31: -0.6940 S32: 0.2239 S33: -0.1047 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4209 -2.1590 10.3756 REMARK 3 T TENSOR REMARK 3 T11: 0.2665 T22: 0.3970 REMARK 3 T33: 0.2767 T12: 0.0304 REMARK 3 T13: 0.0084 T23: 0.1266 REMARK 3 L TENSOR REMARK 3 L11: 3.0318 L22: 2.0107 REMARK 3 L33: 1.9079 L12: -0.4745 REMARK 3 L13: -0.6957 L23: 0.6623 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: 0.4168 S13: 0.2739 REMARK 3 S21: -0.0968 S22: 0.0777 S23: 0.0156 REMARK 3 S31: -0.2410 S32: 0.3295 S33: -0.1273 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1153 -9.3204 1.6953 REMARK 3 T TENSOR REMARK 3 T11: 0.2430 T22: 0.5812 REMARK 3 T33: 0.2340 T12: 0.0644 REMARK 3 T13: 0.0374 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 3.1769 L22: 3.4525 REMARK 3 L33: 4.8434 L12: 0.1103 REMARK 3 L13: 1.1237 L23: -1.8181 REMARK 3 S TENSOR REMARK 3 S11: 0.1328 S12: 1.0874 S13: 0.0913 REMARK 3 S21: -0.2930 S22: -0.2134 S23: -0.0981 REMARK 3 S31: 0.1267 S32: 0.4484 S33: 0.0830 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000257504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41783 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 33.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 1REP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 MM MGCL2, 18% PEG 400, AND 100 MM REMARK 280 TRIS HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.78900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.35750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.78900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.35750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT A 22 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT A 22 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT A 22 C7 C6 REMARK 470 LYS C 11 CG CD CE NZ REMARK 470 LYS C 13 CG CD CE NZ REMARK 470 LYS C 87 CD CE NZ REMARK 470 LYS C 117 CE NZ REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CD NE CZ NH1 NH2 REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 2 O3' DC A 2 C3' -0.040 REMARK 500 DG A 4 O3' DG A 4 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 25 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG B 25 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG B 28 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG B 29 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG B 42 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 97 -165.19 -119.13 REMARK 500 ARG C 145 75.55 -114.48 REMARK 500 PHE C 208 -67.20 -106.89 REMARK 500 THR C 246 0.15 -66.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 12 O2 REMARK 620 2 HOH A 240 O 95.3 REMARK 620 3 DT B 33 O2 79.3 118.7 REMARK 620 4 DT B 34 O4' 136.4 81.1 65.4 REMARK 620 5 HOH B 142 O 110.1 149.3 83.8 91.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 209 O REMARK 620 2 HOH A 222 O 78.8 REMARK 620 3 GLU C 77 OE2 94.1 95.0 REMARK 620 4 ASP C 81 OD1 94.1 167.2 96.2 REMARK 620 5 HOH C 425 O 89.4 87.3 176.2 81.9 REMARK 620 6 HOH C 452 O 176.7 101.6 89.2 85.0 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 57 OD1 REMARK 620 2 HOH C 485 O 161.9 REMARK 620 3 HOH C 504 O 107.1 56.5 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1REP RELATED DB: PDB REMARK 900 1REP CONTAINS THE SAME PROTEIN AND DNA COMPLEX DBREF 7RVA A 1 22 PDB 7RVA 7RVA 1 22 DBREF 7RVA B 23 44 PDB 7RVA 7RVA 23 44 DBREF 7RVA C 1 251 UNP P03856 REPE1_ECOLI 1 251 DBREF 7RVA D 1 3 PDB 7RVA 7RVA 1 3 DBREF 7RVA E 1 4 PDB 7RVA 7RVA 1 4 SEQADV 7RVA MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 7RVA ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 7RVA GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 7RVA SER C -8 UNP P03856 EXPRESSION TAG SEQADV 7RVA HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 7RVA HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 7RVA HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 7RVA HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 7RVA HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 7RVA HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 7RVA GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 7RVA SER C 0 UNP P03856 EXPRESSION TAG SEQADV 7RVA PRO C 118 UNP P03856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 22 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 22 DG DC DC DC DT DC DA DG DT SEQRES 1 B 22 DC DT DG DA DG DG DG DC DA DA DT DT DT SEQRES 2 B 22 DG DT DC DA DC DA DG DG DT SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY SEQRES 1 D 3 UNK UNK UNK SEQRES 1 E 4 UNK UNK UNK UNK HET NA A 101 1 HET MG C 301 1 HET MG C 302 1 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION FORMUL 6 NA NA 1+ FORMUL 7 MG 2(MG 2+) FORMUL 9 HOH *201(H2 O) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 LEU C 135 GLY C 141 1 7 HELIX 6 AA6 LEU C 151 LYS C 155 1 5 HELIX 7 AA7 ASN C 159 TYR C 172 1 14 HELIX 8 AA8 ILE C 185 GLN C 193 1 9 HELIX 9 AA9 PRO C 195 GLN C 199 5 5 HELIX 10 AB1 ARG C 200 PHE C 208 1 9 HELIX 11 AB2 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 ILE C 131 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 PHE C 115 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N ARG C 223 O ARG C 243 LINK O2 DT A 12 NA NA A 101 1555 1555 2.70 LINK NA NA A 101 O HOH A 240 1555 1555 2.77 LINK NA NA A 101 O2 DT B 33 1555 1555 2.91 LINK NA NA A 101 O4' DT B 34 1555 1555 3.18 LINK NA NA A 101 O HOH B 142 1555 1555 2.79 LINK O HOH A 209 MG MG C 301 1555 1555 2.25 LINK O HOH A 222 MG MG C 301 1555 1555 1.97 LINK OD1 ASP C 57 MG MG C 302 1555 1555 2.54 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.04 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.04 LINK MG MG C 301 O HOH C 425 1555 1555 2.13 LINK MG MG C 301 O HOH C 452 1555 1555 2.08 LINK MG MG C 302 O HOH C 485 1555 1555 2.82 LINK MG MG C 302 O HOH C 504 1555 1555 2.76 CRYST1 107.578 80.715 73.299 90.00 122.63 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009296 0.000000 0.005952 0.00000 SCALE2 0.000000 0.012389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016200 0.00000