HEADER TRANSFERASE/INHIBITOR 19-AUG-21 7RWG TITLE "CRYSTAL STRUCTURE OF HUMAN METHIONINE ADENOSYLTRANSFERASE 2A (MAT2A) TITLE 2 IN COMPLEX WITH SAM AND ALLOSTERIC INHIBITOR AGI-43192 COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHASE ISOFORM TYPE-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADOMET SYNTHASE 2,METHIONINE ADENOSYLTRANSFERASE 2,MAT 2, COMPND 5 METHIONINE ADENOSYLTRANSFERASE II,MAT-II; COMPND 6 EC: 2.5.1.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAT2A, AMS2, MATA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHIONINE ADENOSYLTRANSFERASE, SAM, ALLOSTERIC INHIBITOR, KEYWDS 2 TRANSFERASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.JIN,A.K.PADYANA REVDAT 4 18-OCT-23 7RWG 1 REMARK REVDAT 3 06-APR-22 7RWG 1 JRNL REVDAT 2 30-MAR-22 7RWG 1 JRNL REVDAT 1 23-MAR-22 7RWG 0 JRNL AUTH M.LI,Z.KONTEATIS,N.NAGARAJA,Y.CHEN,S.ZHOU,G.MA,S.GROSS, JRNL AUTH 2 K.MARJON,M.L.HYER,E.MANDLEY,M.LEIN,A.K.PADYANA,L.JIN,S.TONG, JRNL AUTH 3 R.PETERS,J.MURTIE,J.TRAVINS,M.MEDEIROS,P.LIU,V.FRANK, JRNL AUTH 4 E.T.JUDD,S.A.BILLER,K.M.MARKS,Z.SUI,S.K.REZNIK JRNL TITL LEVERAGING STRUCTURE-BASED DRUG DESIGN TO IDENTIFY JRNL TITL 2 NEXT-GENERATION MAT2A INHIBITORS, INCLUDING BRAIN-PENETRANT JRNL TITL 3 AND PERIPHERALLY EFFICACIOUS LEADS. JRNL REF J.MED.CHEM. V. 65 4600 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35293760 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01595 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.KONTEATIS,J.TRAVINS REMARK 1 TITL DISCOVERY OF AG-270, A FIRST-IN-CLASS ORAL MAT2A INHIBITOR REMARK 1 TITL 2 DISCOVERY OF AG-270, A FIRST-IN-CLASS ORAL MAT2A INHIBITOR REMARK 1 REF J.MED.CHEM. V. 64 4430 2021 REMARK 1 REFN ISSN 0022-2623 REMARK 1 PMID 33829783 REMARK 1 DOI 10.1021/ACS.JMEDCHEM.0C01895 REMARK 2 REMARK 2 RESOLUTION. 0.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 207070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.123 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.136 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 10109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9500 - 3.0100 0.99 7163 361 0.1201 0.1413 REMARK 3 2 3.0100 - 2.3900 0.99 6970 350 0.1052 0.1230 REMARK 3 3 2.3900 - 2.0900 0.99 6892 353 0.0992 0.1156 REMARK 3 4 2.0900 - 1.9000 0.98 6820 334 0.0985 0.1107 REMARK 3 5 1.9000 - 1.7600 0.98 6832 338 0.0987 0.1128 REMARK 3 6 1.7600 - 1.6600 0.97 6734 330 0.0998 0.1086 REMARK 3 7 1.6600 - 1.5800 0.97 6774 315 0.0996 0.1195 REMARK 3 8 1.5800 - 1.5100 0.97 6712 343 0.1009 0.1086 REMARK 3 9 1.5100 - 1.4500 0.97 6658 346 0.1046 0.1126 REMARK 3 10 1.4500 - 1.4000 0.96 6672 335 0.1098 0.1179 REMARK 3 11 1.4000 - 1.3600 0.96 6575 375 0.1138 0.1229 REMARK 3 12 1.3600 - 1.3200 0.96 6608 347 0.1167 0.1327 REMARK 3 13 1.3200 - 1.2800 0.96 6545 328 0.1156 0.1269 REMARK 3 14 1.2800 - 1.2500 0.95 6596 359 0.1239 0.1249 REMARK 3 15 1.2500 - 1.2200 0.95 6506 329 0.1269 0.1472 REMARK 3 16 1.2200 - 1.2000 0.95 6520 357 0.1322 0.1486 REMARK 3 17 1.2000 - 1.1700 0.95 6449 331 0.1317 0.1290 REMARK 3 18 1.1700 - 1.1500 0.95 6506 374 0.1356 0.1400 REMARK 3 19 1.1500 - 1.1300 0.94 6452 326 0.1326 0.1418 REMARK 3 20 1.1300 - 1.1100 0.94 6459 325 0.1344 0.1399 REMARK 3 21 1.1100 - 1.0900 0.94 6379 343 0.1423 0.1389 REMARK 3 22 1.0900 - 1.0800 0.94 6447 345 0.1529 0.1677 REMARK 3 23 1.0800 - 1.0600 0.93 6365 339 0.1710 0.2050 REMARK 3 24 1.0600 - 1.0400 0.93 6351 341 0.1824 0.1949 REMARK 3 25 1.0400 - 1.0300 0.93 6397 303 0.1956 0.2141 REMARK 3 26 1.0300 - 1.0200 0.93 6361 320 0.2050 0.1913 REMARK 3 27 1.0200 - 1.0000 0.92 6332 310 0.2245 0.2483 REMARK 3 28 1.0000 - 0.9900 0.92 6338 326 0.2423 0.2394 REMARK 3 29 0.9900 - 0.9800 0.92 6271 328 0.2575 0.2705 REMARK 3 30 0.9800 - 0.9700 0.92 6277 298 0.2829 0.2663 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.095 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.012 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3382 REMARK 3 ANGLE : 1.142 4607 REMARK 3 CHIRALITY : 0.092 495 REMARK 3 PLANARITY : 0.010 605 REMARK 3 DIHEDRAL : 21.293 1290 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1518 5.8489 -18.2592 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0475 REMARK 3 T33: 0.0510 T12: -0.0008 REMARK 3 T13: 0.0001 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.2206 L22: 0.2683 REMARK 3 L33: 0.3233 L12: -0.0737 REMARK 3 L13: 0.0196 L23: -0.0375 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.0024 S13: 0.0086 REMARK 3 S21: 0.0207 S22: 0.0113 S23: -0.0272 REMARK 3 S31: -0.0205 S32: 0.0284 S33: 0.0089 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3977 15.8570 -5.5690 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.0718 REMARK 3 T33: 0.0527 T12: -0.0034 REMARK 3 T13: -0.0056 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.6555 L22: 1.3710 REMARK 3 L33: 0.8058 L12: -0.3562 REMARK 3 L13: -0.0237 L23: -0.0110 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: -0.0082 S13: 0.0760 REMARK 3 S21: 0.0662 S22: 0.0185 S23: -0.0280 REMARK 3 S31: -0.0421 S32: 0.1093 S33: 0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2363 12.3431 -26.1432 REMARK 3 T TENSOR REMARK 3 T11: 0.0462 T22: 0.0511 REMARK 3 T33: 0.0568 T12: -0.0066 REMARK 3 T13: -0.0004 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.1768 L22: 0.2965 REMARK 3 L33: 0.1972 L12: -0.0910 REMARK 3 L13: -0.0089 L23: -0.0218 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.0061 S13: 0.0331 REMARK 3 S21: -0.0072 S22: -0.0010 S23: -0.0130 REMARK 3 S31: -0.0283 S32: 0.0032 S33: -0.0011 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6458 26.4697 -36.1141 REMARK 3 T TENSOR REMARK 3 T11: 0.0833 T22: 0.0635 REMARK 3 T33: 0.0825 T12: -0.0021 REMARK 3 T13: -0.0007 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.0297 L22: 0.6273 REMARK 3 L33: 0.9518 L12: 0.2420 REMARK 3 L13: -0.2914 L23: -0.1113 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.1011 S13: 0.1228 REMARK 3 S21: -0.0835 S22: 0.0443 S23: 0.0211 REMARK 3 S31: -0.1061 S32: 0.0034 S33: 0.0099 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4671 1.9319 -31.5567 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.0463 REMARK 3 T33: 0.0483 T12: -0.0022 REMARK 3 T13: 0.0028 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.2175 L22: 0.1713 REMARK 3 L33: 0.1650 L12: -0.0793 REMARK 3 L13: -0.0055 L23: 0.0278 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0272 S13: 0.0055 REMARK 3 S21: -0.0265 S22: -0.0022 S23: -0.0124 REMARK 3 S31: -0.0060 S32: 0.0174 S33: -0.0010 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2098 -5.6540 -39.0877 REMARK 3 T TENSOR REMARK 3 T11: 0.0775 T22: 0.0868 REMARK 3 T33: 0.0898 T12: 0.0038 REMARK 3 T13: 0.0092 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.5686 L22: 0.3576 REMARK 3 L33: 1.5075 L12: -0.2696 REMARK 3 L13: 0.2731 L23: -0.2631 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: 0.1224 S13: -0.0331 REMARK 3 S21: -0.0764 S22: -0.0193 S23: -0.0084 REMARK 3 S31: 0.1041 S32: 0.0496 S33: -0.0321 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8887 7.8022 -29.3574 REMARK 3 T TENSOR REMARK 3 T11: 0.0678 T22: 0.0696 REMARK 3 T33: 0.0849 T12: -0.0113 REMARK 3 T13: 0.0039 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.4252 L22: 0.3139 REMARK 3 L33: 0.7266 L12: 0.0547 REMARK 3 L13: 0.0346 L23: -0.1762 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.0414 S13: 0.0650 REMARK 3 S21: -0.0296 S22: 0.0115 S23: -0.0891 REMARK 3 S31: -0.0563 S32: 0.0742 S33: -0.0227 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7RWG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000259133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 207397 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.970 REMARK 200 RESOLUTION RANGE LOW (A) : 46.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.86300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2P02 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LICL, 0.1 M TRIS PH 8.0, 18%-20% REMARK 280 PEG6000, 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.99500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.86000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.09500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.99500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.86000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.09500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.99500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.86000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.09500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.99500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.86000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.09500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 598 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 632 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 872 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1078 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1090 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 GLY A 7 REMARK 465 PHE A 8 REMARK 465 HIS A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 504 O HOH A 897 1.89 REMARK 500 O HOH A 597 O HOH A 757 1.90 REMARK 500 O HOH A 551 O HOH A 921 1.92 REMARK 500 O HOH A 864 O HOH A 902 1.93 REMARK 500 O HOH A 707 O HOH A 711 1.95 REMARK 500 O HOH A 526 O HOH A 945 1.98 REMARK 500 O HOH A 775 O HOH A 971 1.98 REMARK 500 O HOH A 515 O HOH A 762 2.00 REMARK 500 O HOH A 595 O HOH A 967 2.00 REMARK 500 O HOH A 513 O HOH A 908 2.01 REMARK 500 O HOH A 691 O HOH A 778 2.04 REMARK 500 O HOH A 799 O HOH A 929 2.06 REMARK 500 O HOH A 942 O HOH A 965 2.06 REMARK 500 O HOH A 833 O HOH A 922 2.08 REMARK 500 O HOH A 919 O HOH A 921 2.09 REMARK 500 N PHE A 12 O HOH A 501 2.11 REMARK 500 NZ LYS A 392 O HOH A 502 2.12 REMARK 500 O HOH A 614 O HOH A 836 2.14 REMARK 500 O HOH A 526 O HOH A 778 2.15 REMARK 500 NH2 ARG A 177 O HOH A 503 2.17 REMARK 500 O HOH A 858 O HOH A 984 2.18 REMARK 500 O HOH A 711 O HOH A 849 2.19 REMARK 500 O2 GOL A 409 O HOH A 504 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1059 O HOH A 1059 3554 1.98 REMARK 500 O HOH A 857 O HOH A 934 8554 2.01 REMARK 500 O HOH A 913 O HOH A 913 4554 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 149 32.60 70.58 REMARK 500 THR A 270 -102.79 -119.78 REMARK 500 ARG A 292 -63.32 -90.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1104 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1105 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1106 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1107 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A1108 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1109 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A1110 DISTANCE = 7.42 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KCC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH AGI-270 REMARK 900 RELATED ID: 7RW5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH AGI-0034515 REMARK 900 RELATED ID: 7RW7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH AGI-0039899 DBREF 7RWG A 1 395 UNP P31153 METK2_HUMAN 1 395 SEQADV 7RWG SER A 0 UNP P31153 EXPRESSION TAG SEQRES 1 A 396 SER MET ASN GLY GLN LEU ASN GLY PHE HIS GLU ALA PHE SEQRES 2 A 396 ILE GLU GLU GLY THR PHE LEU PHE THR SER GLU SER VAL SEQRES 3 A 396 GLY GLU GLY HIS PRO ASP LYS ILE CYS ASP GLN ILE SER SEQRES 4 A 396 ASP ALA VAL LEU ASP ALA HIS LEU GLN GLN ASP PRO ASP SEQRES 5 A 396 ALA LYS VAL ALA CYS GLU THR VAL ALA LYS THR GLY MET SEQRES 6 A 396 ILE LEU LEU ALA GLY GLU ILE THR SER ARG ALA ALA VAL SEQRES 7 A 396 ASP TYR GLN LYS VAL VAL ARG GLU ALA VAL LYS HIS ILE SEQRES 8 A 396 GLY TYR ASP ASP SER SER LYS GLY PHE ASP TYR LYS THR SEQRES 9 A 396 CYS ASN VAL LEU VAL ALA LEU GLU GLN GLN SER PRO ASP SEQRES 10 A 396 ILE ALA GLN GLY VAL HIS LEU ASP ARG ASN GLU GLU ASP SEQRES 11 A 396 ILE GLY ALA GLY ASP GLN GLY LEU MET PHE GLY TYR ALA SEQRES 12 A 396 THR ASP GLU THR GLU GLU CYS MET PRO LEU THR ILE VAL SEQRES 13 A 396 LEU ALA HIS LYS LEU ASN ALA LYS LEU ALA GLU LEU ARG SEQRES 14 A 396 ARG ASN GLY THR LEU PRO TRP LEU ARG PRO ASP SER LYS SEQRES 15 A 396 THR GLN VAL THR VAL GLN TYR MET GLN ASP ARG GLY ALA SEQRES 16 A 396 VAL LEU PRO ILE ARG VAL HIS THR ILE VAL ILE SER VAL SEQRES 17 A 396 GLN HIS ASP GLU GLU VAL CYS LEU ASP GLU MET ARG ASP SEQRES 18 A 396 ALA LEU LYS GLU LYS VAL ILE LYS ALA VAL VAL PRO ALA SEQRES 19 A 396 LYS TYR LEU ASP GLU ASP THR ILE TYR HIS LEU GLN PRO SEQRES 20 A 396 SER GLY ARG PHE VAL ILE GLY GLY PRO GLN GLY ASP ALA SEQRES 21 A 396 GLY LEU THR GLY ARG LYS ILE ILE VAL ASP THR TYR GLY SEQRES 22 A 396 GLY TRP GLY ALA HIS GLY GLY GLY ALA PHE SER GLY LYS SEQRES 23 A 396 ASP TYR THR LYS VAL ASP ARG SER ALA ALA TYR ALA ALA SEQRES 24 A 396 ARG TRP VAL ALA LYS SER LEU VAL LYS GLY GLY LEU CYS SEQRES 25 A 396 ARG ARG VAL LEU VAL GLN VAL SER TYR ALA ILE GLY VAL SEQRES 26 A 396 SER HIS PRO LEU SER ILE SER ILE PHE HIS TYR GLY THR SEQRES 27 A 396 SER GLN LYS SER GLU ARG GLU LEU LEU GLU ILE VAL LYS SEQRES 28 A 396 LYS ASN PHE ASP LEU ARG PRO GLY VAL ILE VAL ARG ASP SEQRES 29 A 396 LEU ASP LEU LYS LYS PRO ILE TYR GLN ARG THR ALA ALA SEQRES 30 A 396 TYR GLY HIS PHE GLY ARG ASP SER PHE PRO TRP GLU VAL SEQRES 31 A 396 PRO LYS LYS LEU LYS TYR HET SAM A 401 46 HET CL A 402 1 HET EDO A 403 10 HET EDO A 404 10 HET EDO A 405 10 HET EDO A 406 10 HET EDO A 407 10 HET 7UN A 408 50 HET GOL A 409 14 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM 7UN (8R)-8-(4-CHLOROPHENYL)-6-(2-METHYL-2H-INDAZOL-5-YL)-2- HETNAM 2 7UN [(2,2,2-TRIFLUOROETHYL)AMINO]-5,8-DIHYDROPYRIDO[4,3- HETNAM 3 7UN D]PYRIMIDIN-7(6H)-ONE HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 CL CL 1- FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 7UN C23 H16 CL F3 N6 O FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *610(H2 O) HELIX 1 AA1 HIS A 29 ASP A 49 1 21 HELIX 2 AA2 ASP A 78 GLY A 91 1 14 HELIX 3 AA3 SER A 95 GLY A 98 5 4 HELIX 4 AA4 SER A 114 HIS A 122 1 9 HELIX 5 AA5 ASN A 126 ILE A 130 5 5 HELIX 6 AA6 PRO A 151 ASN A 170 1 20 HELIX 7 AA7 CYS A 214 LYS A 225 1 12 HELIX 8 AA8 VAL A 226 VAL A 231 1 6 HELIX 9 AA9 PRO A 232 LEU A 236 5 5 HELIX 10 AB1 GLY A 253 ASP A 258 1 6 HELIX 11 AB2 LYS A 289 GLY A 308 1 20 HELIX 12 AB3 SER A 341 PHE A 353 1 13 HELIX 13 AB4 ARG A 356 ASP A 365 1 10 HELIX 14 AB5 ILE A 370 ALA A 375 1 6 HELIX 15 AB6 PHE A 385 VAL A 389 5 5 SHEET 1 AA1 4 THR A 17 VAL A 25 0 SHEET 2 AA1 4 LEU A 176 ASP A 191 -1 O TYR A 188 N PHE A 18 SHEET 3 AA1 4 ALA A 194 HIS A 209 -1 O ILE A 198 N GLN A 187 SHEET 4 AA1 4 ILE A 241 LEU A 244 1 O HIS A 243 N ILE A 203 SHEET 1 AA2 4 ASN A 105 GLU A 111 0 SHEET 2 AA2 4 MET A 64 THR A 72 1 N LEU A 67 O ALA A 109 SHEET 3 AA2 4 LYS A 53 LYS A 61 -1 N LYS A 53 O THR A 72 SHEET 4 AA2 4 GLY A 260 LEU A 261 -1 O GLY A 260 N ALA A 60 SHEET 1 AA3 2 ASP A 93 ASP A 94 0 SHEET 2 AA3 2 PHE A 99 ASP A 100 -1 O PHE A 99 N ASP A 94 SHEET 1 AA4 3 GLY A 136 THR A 143 0 SHEET 2 AA4 3 ARG A 313 TYR A 320 -1 O VAL A 318 N MET A 138 SHEET 3 AA4 3 SER A 329 PHE A 333 -1 O PHE A 333 N LEU A 315 CRYST1 67.990 93.720 116.190 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008607 0.00000