HEADER VIRAL PROTEIN/IMMUNE SYSTEM 30-AUG-21 7S0B TITLE STRUCTURE OF THE SARS-COV-2 RBD IN COMPLEX WITH NEUTRALIZING ANTIBODY TITLE 2 N-612-056 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-612-056 FAB HEAVY CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: N-612-056 LIGHT CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S1; COMPND 11 CHAIN: E, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 16 2; SOURCE 17 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 18 ORGANISM_TAXID: 2697049; SOURCE 19 GENE: S, 2; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIBODY, SARS-COV-2, COVID-19, MRNA DISPLAY, ANTIVIRAL PROTEIN, KEYWDS 2 VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.TANAKA,C.O.BARNES,P.J.BJORKMAN REVDAT 3 18-OCT-23 7S0B 1 JRNL REVDAT 2 16-MAR-22 7S0B 1 JRNL REVDAT 1 06-OCT-21 7S0B 0 JRNL AUTH S.TANAKA,C.A.OLSON,C.O.BARNES,W.HIGASHIDE,M.GONZALEZ,J.TAFT, JRNL AUTH 2 A.RICHARDSON,M.MARTIN-FERNANDEZ,D.BOGUNOVIC, JRNL AUTH 3 P.N.P.GNANAPRAGASAM,P.J.BJORKMAN,P.SPILMAN,K.NIAZI, JRNL AUTH 4 S.RABIZADEH,P.SOON-SHIONG JRNL TITL RAPID IDENTIFICATION OF NEUTRALIZING ANTIBODIES AGAINST JRNL TITL 2 SARS-COV-2 VARIANTS BY MRNA DISPLAY. JRNL REF CELL REP V. 38 10348 2022 JRNL REFN ESSN 2211-1247 JRNL PMID 35114110 JRNL DOI 10.1016/J.CELREP.2022.110348 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.TANAKA,C.ANDERS OLSON,C.O.BARNES,W.HIGASHIDE,M.GONZALEZ, REMARK 1 AUTH 2 J.TAFT,A.RICHARDSON,M.MARTIN-FERNANDEZ,D.BOGUNOVIC, REMARK 1 AUTH 3 P.N.P.GNANAPRAGASAM,P.J.BJORKMAN,P.SPILMAN,K.NIAZI, REMARK 1 AUTH 4 S.RABIZADEH,P.SOON-SHIONG REMARK 1 TITL RAPID IDENTIFICATION OF NEUTRALIZING ANTIBODIES AGAINST REMARK 1 TITL 2 SARS-COV-2 VARIANTS BY MRNA DISPLAY. REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 34545362 REMARK 1 DOI 10.1101/2021.09.14.460356 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 34223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4100 - 6.6300 0.99 2886 142 0.2105 0.2479 REMARK 3 2 6.6300 - 5.2700 1.00 2747 174 0.2025 0.2226 REMARK 3 3 5.2700 - 4.6000 1.00 2738 137 0.1648 0.1850 REMARK 3 4 4.6000 - 4.1800 0.99 2691 170 0.1696 0.2276 REMARK 3 5 4.1800 - 3.8800 1.00 2705 137 0.1987 0.2275 REMARK 3 6 3.8800 - 3.6500 1.00 2712 121 0.2151 0.3158 REMARK 3 7 3.6500 - 3.4700 1.00 2704 137 0.2250 0.2605 REMARK 3 8 3.4700 - 3.3200 1.00 2692 149 0.2367 0.3169 REMARK 3 9 3.3200 - 3.1900 1.00 2663 152 0.2618 0.3501 REMARK 3 10 3.1900 - 3.0800 1.00 2704 128 0.2784 0.3321 REMARK 3 11 3.0800 - 2.9900 1.00 2682 140 0.2942 0.3027 REMARK 3 12 2.9900 - 2.9000 0.96 2559 153 0.3338 0.4154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.377 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.699 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 9943 REMARK 3 ANGLE : 0.905 13535 REMARK 3 CHIRALITY : 0.061 1501 REMARK 3 PLANARITY : 0.010 1751 REMARK 3 DIHEDRAL : 6.739 1384 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -25.5066 -0.0284 -23.8631 REMARK 3 T TENSOR REMARK 3 T11: 0.3680 T22: 0.3864 REMARK 3 T33: 0.3840 T12: -0.0704 REMARK 3 T13: -0.0029 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.8235 L22: 0.7187 REMARK 3 L33: 0.3596 L12: -0.1836 REMARK 3 L13: -0.1405 L23: 0.2053 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.2251 S13: 0.0132 REMARK 3 S21: 0.1764 S22: 0.0224 S23: -0.0597 REMARK 3 S31: 0.0375 S32: 0.0523 S33: -0.0246 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 1 through 108 or REMARK 3 resid 110 through 222)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 1 through 108 or REMARK 3 resid 110 through 222)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 1 through 23 or REMARK 3 resid 25 through 123 or resid 125 through REMARK 3 193 or resid 195 through 213)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 1 through 23 or REMARK 3 resid 25 through 123 or resid 125 through REMARK 3 193 or resid 195 through 213)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "E" and (resid 332 through 458 or REMARK 3 resid 460 through 601)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "F" and (resid 332 through 458 or REMARK 3 resid 460 through 601)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7S0B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000259346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34420 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.18700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7K8M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM CITRATE TRIBASIC REMARK 280 TETRAHYDRATE AND 20% W/V POLYETHYLENE GLYCOL 3,350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 51.14850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.82800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.14850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.82800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 136 REMARK 465 LYS A 137 REMARK 465 SER A 138 REMARK 465 THR A 139 REMARK 465 SER A 223 REMARK 465 CYS A 224 REMARK 465 ASP A 225 REMARK 465 LYS A 226 REMARK 465 THR A 227 REMARK 465 HIS A 228 REMARK 465 CYS B 214 REMARK 465 SER C 136 REMARK 465 LYS C 137 REMARK 465 SER C 138 REMARK 465 THR C 139 REMARK 465 CYS C 224 REMARK 465 ASP C 225 REMARK 465 LYS C 226 REMARK 465 THR C 227 REMARK 465 HIS C 228 REMARK 465 CYS D 214 REMARK 465 ARG E 319 REMARK 465 VAL E 320 REMARK 465 GLN E 321 REMARK 465 PRO E 322 REMARK 465 THR E 323 REMARK 465 GLU E 324 REMARK 465 SER E 325 REMARK 465 ILE E 326 REMARK 465 VAL E 327 REMARK 465 ARG E 328 REMARK 465 PHE E 329 REMARK 465 LYS E 529 REMARK 465 SER E 530 REMARK 465 THR E 531 REMARK 465 ASN E 532 REMARK 465 LEU E 533 REMARK 465 HIS E 534 REMARK 465 HIS E 535 REMARK 465 HIS E 536 REMARK 465 HIS E 537 REMARK 465 HIS E 538 REMARK 465 HIS E 539 REMARK 465 ARG F 319 REMARK 465 VAL F 320 REMARK 465 GLN F 321 REMARK 465 PRO F 322 REMARK 465 THR F 323 REMARK 465 GLU F 324 REMARK 465 SER F 325 REMARK 465 ILE F 326 REMARK 465 VAL F 327 REMARK 465 ARG F 328 REMARK 465 PHE F 329 REMARK 465 PRO F 330 REMARK 465 LYS F 529 REMARK 465 SER F 530 REMARK 465 THR F 531 REMARK 465 ASN F 532 REMARK 465 LEU F 533 REMARK 465 HIS F 534 REMARK 465 HIS F 535 REMARK 465 HIS F 536 REMARK 465 HIS F 537 REMARK 465 HIS F 538 REMARK 465 HIS F 539 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN F 331 CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 109 CA CB CG OD1 OD2 REMARK 480 GLN B 124 CA CB CG CD OE1 NE2 REMARK 480 GLN D 24 CA CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU D 105 OH TYR D 173 1.96 REMARK 500 OD1 ASP B 91 O HOH B 301 2.11 REMARK 500 OG SER B 182 OD2 ASP B 185 2.15 REMARK 500 NZ LYS B 42 O HOH B 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER D 26 ND2 ASN E 481 2455 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 132 CG1 - CB - CG2 ANGL. DEV. = 16.7 DEGREES REMARK 500 LYS F 444 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 TYR F 508 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 TYR F 508 CD1 - CG - CD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 143.36 -172.07 REMARK 500 PRO A 127 -165.03 -79.94 REMARK 500 ASP A 152 70.27 64.43 REMARK 500 PRO A 155 -159.67 -93.10 REMARK 500 SER A 181 2.83 -64.49 REMARK 500 LEU A 197 -72.32 -51.78 REMARK 500 SER B 30 -129.83 57.78 REMARK 500 ASP B 50 -136.20 48.67 REMARK 500 ASN B 138 78.80 55.91 REMARK 500 ASN B 158 13.77 -152.28 REMARK 500 LYS B 169 -70.03 -104.12 REMARK 500 LYS B 190 -50.65 -136.34 REMARK 500 LEU C 18 145.32 -171.11 REMARK 500 PRO C 127 -164.65 -79.34 REMARK 500 ASP C 152 72.75 63.26 REMARK 500 PRO C 155 -158.33 -93.28 REMARK 500 SER C 181 2.89 -64.60 REMARK 500 LEU C 197 -70.64 -48.25 REMARK 500 SER D 30 -129.74 57.92 REMARK 500 ASP D 50 -135.60 49.36 REMARK 500 ASN D 138 77.88 56.47 REMARK 500 PRO D 141 -179.25 -67.72 REMARK 500 SER D 156 149.01 -173.12 REMARK 500 ASN D 158 13.22 -149.95 REMARK 500 LYS D 169 -69.33 -106.80 REMARK 500 LYS D 190 -53.73 -137.41 REMARK 500 ASN E 331 38.45 -77.02 REMARK 500 ALA E 352 53.73 -103.18 REMARK 500 LEU E 368 -59.42 -123.19 REMARK 500 ASN E 370 68.08 -102.32 REMARK 500 LYS E 386 56.40 -97.59 REMARK 500 ASN E 422 -50.55 -131.87 REMARK 500 ASN E 481 -53.79 -127.24 REMARK 500 ILE F 332 144.10 -172.62 REMARK 500 ALA F 352 54.43 -103.15 REMARK 500 LEU F 368 -61.57 -123.60 REMARK 500 LYS F 386 56.91 -96.41 REMARK 500 ASN F 422 -50.64 -132.60 REMARK 500 ASN F 481 -55.82 -126.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS F 444 VAL F 445 135.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 142 0.18 SIDE CHAIN REMARK 500 TYR F 508 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG E 601 REMARK 615 NAG F 601 DBREF 7S0B A 1 228 PDB 7S0B 7S0B 1 228 DBREF 7S0B B 1 214 PDB 7S0B 7S0B 1 214 DBREF 7S0B C 1 228 PDB 7S0B 7S0B 1 228 DBREF 7S0B D 1 214 PDB 7S0B 7S0B 1 214 DBREF 7S0B E 319 533 UNP P0DTC2 SPIKE_SARS2 319 533 DBREF 7S0B F 319 533 UNP P0DTC2 SPIKE_SARS2 319 533 SEQADV 7S0B HIS E 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7S0B HIS E 535 UNP P0DTC2 EXPRESSION TAG SEQADV 7S0B HIS E 536 UNP P0DTC2 EXPRESSION TAG SEQADV 7S0B HIS E 537 UNP P0DTC2 EXPRESSION TAG SEQADV 7S0B HIS E 538 UNP P0DTC2 EXPRESSION TAG SEQADV 7S0B HIS E 539 UNP P0DTC2 EXPRESSION TAG SEQADV 7S0B HIS F 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7S0B HIS F 535 UNP P0DTC2 EXPRESSION TAG SEQADV 7S0B HIS F 536 UNP P0DTC2 EXPRESSION TAG SEQADV 7S0B HIS F 537 UNP P0DTC2 EXPRESSION TAG SEQADV 7S0B HIS F 538 UNP P0DTC2 EXPRESSION TAG SEQADV 7S0B HIS F 539 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 228 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 228 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 228 PHE THR PHE SER SER TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 A 228 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER LEU ILE SER SEQRES 5 A 228 GLY SER GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 228 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 A 228 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 228 ALA VAL TYR TYR CYS ALA ARG ASP LEU TRP GLY SER GLY SEQRES 9 A 228 PHE PHE ALA PHE ASP VAL TRP GLY GLN GLY THR LEU VAL SEQRES 10 A 228 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 A 228 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 A 228 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 A 228 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 A 228 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 A 228 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 A 228 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 A 228 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 A 228 LYS SER CYS ASP LYS THR HIS SEQRES 1 B 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 B 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER SEQRES 3 B 214 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 B 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 B 214 ASN LEU GLU THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 214 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER LEU SEQRES 7 B 214 GLN PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN ASP SEQRES 8 B 214 ALA GLY THR PRO LEU THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 B 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 B 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 B 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 B 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 B 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 B 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 B 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 B 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 B 214 PHE ASN ARG GLY GLU CYS SEQRES 1 C 228 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 228 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 228 PHE THR PHE SER SER TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 C 228 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER LEU ILE SER SEQRES 5 C 228 GLY SER GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 C 228 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 C 228 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 C 228 ALA VAL TYR TYR CYS ALA ARG ASP LEU TRP GLY SER GLY SEQRES 9 C 228 PHE PHE ALA PHE ASP VAL TRP GLY GLN GLY THR LEU VAL SEQRES 10 C 228 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 C 228 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 C 228 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 C 228 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 C 228 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 C 228 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 C 228 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 C 228 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 C 228 LYS SER CYS ASP LYS THR HIS SEQRES 1 D 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 D 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER SEQRES 3 D 214 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 D 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 D 214 ASN LEU GLU THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 D 214 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER LEU SEQRES 7 D 214 GLN PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN ASP SEQRES 8 D 214 ALA GLY THR PRO LEU THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 D 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 D 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 D 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 D 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 D 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 D 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 D 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 D 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 D 214 PHE ASN ARG GLY GLU CYS SEQRES 1 E 221 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 E 221 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 E 221 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 E 221 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 E 221 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 E 221 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 E 221 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 E 221 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 E 221 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 E 221 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 E 221 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 E 221 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 E 221 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 E 221 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 E 221 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 E 221 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 E 221 PRO LYS LYS SER THR ASN LEU HIS HIS HIS HIS HIS HIS SEQRES 1 F 221 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 F 221 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 F 221 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 F 221 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 F 221 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 F 221 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 F 221 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 F 221 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 F 221 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 F 221 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 F 221 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 F 221 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 F 221 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 F 221 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 F 221 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 F 221 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 F 221 PRO LYS LYS SER THR ASN LEU HIS HIS HIS HIS HIS HIS HET NAG E 601 14 HET NAG F 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 7 NAG 2(C8 H15 N O6) FORMUL 9 HOH *125(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 ASP A 62 LYS A 65 5 4 HELIX 3 AA3 ARG A 87 THR A 91 5 5 HELIX 4 AA4 SER A 164 ALA A 166 5 3 HELIX 5 AA5 GLN B 79 ILE B 83 5 5 HELIX 6 AA6 SER B 121 SER B 127 1 7 HELIX 7 AA7 LYS B 183 HIS B 189 1 7 HELIX 8 AA8 THR C 28 TYR C 32 5 5 HELIX 9 AA9 ASP C 62 LYS C 65 5 4 HELIX 10 AB1 ARG C 87 THR C 91 5 5 HELIX 11 AB2 SER C 164 ALA C 166 5 3 HELIX 12 AB3 LYS C 209 ASN C 212 5 4 HELIX 13 AB4 GLN D 79 ILE D 83 5 5 HELIX 14 AB5 SER D 121 GLY D 128 1 8 HELIX 15 AB6 LYS D 183 HIS D 189 1 7 HELIX 16 AB7 PRO E 337 ASN E 343 1 7 HELIX 17 AB8 SER E 349 TRP E 353 5 5 HELIX 18 AB9 TYR E 365 ASN E 370 1 6 HELIX 19 AC1 PRO E 384 ASN E 388 5 5 HELIX 20 AC2 ASP E 405 ILE E 410 5 6 HELIX 21 AC3 GLY E 416 ASN E 422 1 7 HELIX 22 AC4 SER E 438 SER E 443 1 6 HELIX 23 AC5 GLY E 502 TYR E 505 5 4 HELIX 24 AC6 PRO F 337 ASN F 343 1 7 HELIX 25 AC7 SER F 349 TRP F 353 5 5 HELIX 26 AC8 TYR F 365 ASN F 370 1 6 HELIX 27 AC9 PRO F 384 ASN F 388 5 5 HELIX 28 AD1 ASP F 405 ILE F 410 5 6 HELIX 29 AD2 GLY F 416 ASN F 422 1 7 HELIX 30 AD3 SER F 438 SER F 443 1 6 HELIX 31 AD4 GLY F 502 TYR F 505 5 4 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 SER A 17 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AA1 4 THR A 78 ASN A 84 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N SER A 71 O TYR A 80 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 115 VAL A 119 1 O THR A 118 N VAL A 12 SHEET 3 AA2 6 ALA A 92 ASP A 99 -1 N TYR A 94 O THR A 115 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N SER A 35 O ALA A 97 SHEET 5 AA2 6 GLU A 46 ILE A 51 -1 O VAL A 48 N TRP A 36 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O TYR A 59 N LEU A 50 SHEET 1 AA3 4 LEU A 11 VAL A 12 0 SHEET 2 AA3 4 THR A 115 VAL A 119 1 O THR A 118 N VAL A 12 SHEET 3 AA3 4 ALA A 92 ASP A 99 -1 N TYR A 94 O THR A 115 SHEET 4 AA3 4 PHE A 108 TRP A 111 -1 O VAL A 110 N ARG A 98 SHEET 1 AA4 4 SER A 128 LEU A 132 0 SHEET 2 AA4 4 THR A 143 TYR A 153 -1 O GLY A 147 N LEU A 132 SHEET 3 AA4 4 TYR A 184 PRO A 193 -1 O LEU A 186 N VAL A 150 SHEET 4 AA4 4 VAL A 171 THR A 173 -1 N HIS A 172 O VAL A 189 SHEET 1 AA5 4 SER A 128 LEU A 132 0 SHEET 2 AA5 4 THR A 143 TYR A 153 -1 O GLY A 147 N LEU A 132 SHEET 3 AA5 4 TYR A 184 PRO A 193 -1 O LEU A 186 N VAL A 150 SHEET 4 AA5 4 VAL A 177 LEU A 178 -1 N VAL A 177 O SER A 185 SHEET 1 AA6 3 THR A 159 TRP A 162 0 SHEET 2 AA6 3 TYR A 202 HIS A 208 -1 O ASN A 207 N THR A 159 SHEET 3 AA6 3 THR A 213 VAL A 219 -1 O LYS A 217 N CYS A 204 SHEET 1 AA7 4 THR B 5 SER B 7 0 SHEET 2 AA7 4 VAL B 19 GLN B 24 -1 O GLN B 24 N THR B 5 SHEET 3 AA7 4 ASP B 70 ILE B 75 -1 O PHE B 73 N ILE B 21 SHEET 4 AA7 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 AA8 6 SER B 10 SER B 14 0 SHEET 2 AA8 6 THR B 102 LYS B 107 1 O LYS B 107 N ALA B 13 SHEET 3 AA8 6 THR B 85 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AA8 6 LEU B 33 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 AA8 6 LYS B 45 TYR B 49 -1 O ILE B 48 N TRP B 35 SHEET 6 AA8 6 ASN B 53 LEU B 54 -1 O ASN B 53 N TYR B 49 SHEET 1 AA9 4 SER B 114 PHE B 118 0 SHEET 2 AA9 4 THR B 129 PHE B 139 -1 O LEU B 135 N PHE B 116 SHEET 3 AA9 4 TYR B 173 SER B 182 -1 O LEU B 179 N VAL B 132 SHEET 4 AA9 4 SER B 159 VAL B 163 -1 N GLN B 160 O THR B 178 SHEET 1 AB1 4 ALA B 153 LEU B 154 0 SHEET 2 AB1 4 LYS B 145 VAL B 150 -1 N VAL B 150 O ALA B 153 SHEET 3 AB1 4 VAL B 191 THR B 197 -1 O GLU B 195 N GLN B 147 SHEET 4 AB1 4 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SHEET 1 AB2 4 GLN C 3 SER C 7 0 SHEET 2 AB2 4 SER C 17 SER C 25 -1 O ALA C 23 N VAL C 5 SHEET 3 AB2 4 THR C 78 ASN C 84 -1 O LEU C 81 N LEU C 20 SHEET 4 AB2 4 PHE C 68 ASP C 73 -1 N SER C 71 O TYR C 80 SHEET 1 AB3 6 LEU C 11 VAL C 12 0 SHEET 2 AB3 6 THR C 115 VAL C 119 1 O THR C 118 N VAL C 12 SHEET 3 AB3 6 ALA C 92 ASP C 99 -1 N TYR C 94 O THR C 115 SHEET 4 AB3 6 MET C 34 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 AB3 6 GLU C 46 ILE C 51 -1 O VAL C 48 N TRP C 36 SHEET 6 AB3 6 THR C 58 TYR C 60 -1 O TYR C 59 N LEU C 50 SHEET 1 AB4 4 LEU C 11 VAL C 12 0 SHEET 2 AB4 4 THR C 115 VAL C 119 1 O THR C 118 N VAL C 12 SHEET 3 AB4 4 ALA C 92 ASP C 99 -1 N TYR C 94 O THR C 115 SHEET 4 AB4 4 PHE C 108 TRP C 111 -1 O VAL C 110 N ARG C 98 SHEET 1 AB5 4 SER C 128 LEU C 132 0 SHEET 2 AB5 4 THR C 143 TYR C 153 -1 O GLY C 147 N LEU C 132 SHEET 3 AB5 4 TYR C 184 PRO C 193 -1 O SER C 188 N CYS C 148 SHEET 4 AB5 4 VAL C 171 THR C 173 -1 N HIS C 172 O VAL C 189 SHEET 1 AB6 4 SER C 128 LEU C 132 0 SHEET 2 AB6 4 THR C 143 TYR C 153 -1 O GLY C 147 N LEU C 132 SHEET 3 AB6 4 TYR C 184 PRO C 193 -1 O SER C 188 N CYS C 148 SHEET 4 AB6 4 VAL C 177 LEU C 178 -1 N VAL C 177 O SER C 185 SHEET 1 AB7 3 THR C 159 TRP C 162 0 SHEET 2 AB7 3 TYR C 202 HIS C 208 -1 O ASN C 205 N SER C 161 SHEET 3 AB7 3 THR C 213 VAL C 219 -1 O VAL C 215 N VAL C 206 SHEET 1 AB8 4 THR D 5 SER D 7 0 SHEET 2 AB8 4 VAL D 19 GLN D 24 -1 O THR D 22 N SER D 7 SHEET 3 AB8 4 ASP D 70 ILE D 75 -1 O PHE D 73 N ILE D 21 SHEET 4 AB8 4 PHE D 62 SER D 67 -1 N SER D 63 O THR D 74 SHEET 1 AB9 6 SER D 10 SER D 14 0 SHEET 2 AB9 6 THR D 102 LYS D 107 1 O LYS D 107 N ALA D 13 SHEET 3 AB9 6 THR D 85 GLN D 90 -1 N TYR D 86 O THR D 102 SHEET 4 AB9 6 LEU D 33 GLN D 38 -1 N TYR D 36 O TYR D 87 SHEET 5 AB9 6 LYS D 45 TYR D 49 -1 O ILE D 48 N TRP D 35 SHEET 6 AB9 6 ASN D 53 LEU D 54 -1 O ASN D 53 N TYR D 49 SHEET 1 AC1 4 SER D 10 SER D 14 0 SHEET 2 AC1 4 THR D 102 LYS D 107 1 O LYS D 107 N ALA D 13 SHEET 3 AC1 4 THR D 85 GLN D 90 -1 N TYR D 86 O THR D 102 SHEET 4 AC1 4 THR D 97 PHE D 98 -1 O THR D 97 N GLN D 90 SHEET 1 AC2 4 SER D 114 PHE D 118 0 SHEET 2 AC2 4 THR D 129 PHE D 139 -1 O ASN D 137 N SER D 114 SHEET 3 AC2 4 TYR D 173 SER D 182 -1 O LEU D 181 N ALA D 130 SHEET 4 AC2 4 SER D 159 VAL D 163 -1 N GLN D 160 O THR D 178 SHEET 1 AC3 4 ALA D 153 LEU D 154 0 SHEET 2 AC3 4 LYS D 145 VAL D 150 -1 N VAL D 150 O ALA D 153 SHEET 3 AC3 4 VAL D 191 THR D 197 -1 O GLU D 195 N GLN D 147 SHEET 4 AC3 4 VAL D 205 ASN D 210 -1 O VAL D 205 N VAL D 196 SHEET 1 AC4 5 ASN E 354 ILE E 358 0 SHEET 2 AC4 5 ASN E 394 ARG E 403 -1 O VAL E 395 N ILE E 358 SHEET 3 AC4 5 PRO E 507 GLU E 516 -1 O TYR E 508 N ILE E 402 SHEET 4 AC4 5 GLY E 431 ASN E 437 -1 N ILE E 434 O VAL E 511 SHEET 5 AC4 5 THR E 376 TYR E 380 -1 N TYR E 380 O GLY E 431 SHEET 1 AC5 3 CYS E 361 VAL E 362 0 SHEET 2 AC5 3 VAL E 524 CYS E 525 1 O CYS E 525 N CYS E 361 SHEET 3 AC5 3 CYS E 391 PHE E 392 -1 N PHE E 392 O VAL E 524 SHEET 1 AC6 2 LEU E 452 ARG E 454 0 SHEET 2 AC6 2 LEU E 492 SER E 494 -1 O GLN E 493 N TYR E 453 SHEET 1 AC7 2 TYR E 473 GLN E 474 0 SHEET 2 AC7 2 CYS E 488 TYR E 489 -1 O TYR E 489 N TYR E 473 SHEET 1 AC8 5 ASN F 354 ILE F 358 0 SHEET 2 AC8 5 ASN F 394 ARG F 403 -1 O VAL F 395 N ILE F 358 SHEET 3 AC8 5 PRO F 507 GLU F 516 -1 O VAL F 510 N PHE F 400 SHEET 4 AC8 5 GLY F 431 ASN F 437 -1 N ILE F 434 O VAL F 511 SHEET 5 AC8 5 THR F 376 TYR F 380 -1 N TYR F 380 O GLY F 431 SHEET 1 AC9 3 CYS F 361 VAL F 362 0 SHEET 2 AC9 3 VAL F 524 CYS F 525 1 O CYS F 525 N CYS F 361 SHEET 3 AC9 3 CYS F 391 PHE F 392 -1 N PHE F 392 O VAL F 524 SHEET 1 AD1 2 LEU F 452 ARG F 454 0 SHEET 2 AD1 2 LEU F 492 SER F 494 -1 O GLN F 493 N TYR F 453 SHEET 1 AD2 2 TYR F 473 GLN F 474 0 SHEET 2 AD2 2 CYS F 488 TYR F 489 -1 O TYR F 489 N TYR F 473 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 2 CYS A 148 CYS A 204 1555 1555 2.03 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.04 SSBOND 4 CYS B 134 CYS B 194 1555 1555 2.04 SSBOND 5 CYS C 22 CYS C 96 1555 1555 2.04 SSBOND 6 CYS C 148 CYS C 204 1555 1555 2.02 SSBOND 7 CYS D 23 CYS D 88 1555 1555 2.04 SSBOND 8 CYS D 134 CYS D 194 1555 1555 2.04 SSBOND 9 CYS E 336 CYS E 361 1555 1555 2.03 SSBOND 10 CYS E 379 CYS E 432 1555 1555 2.04 SSBOND 11 CYS E 391 CYS E 525 1555 1555 2.04 SSBOND 12 CYS E 480 CYS E 488 1555 1555 2.04 SSBOND 13 CYS F 336 CYS F 361 1555 1555 2.03 SSBOND 14 CYS F 379 CYS F 432 1555 1555 2.04 SSBOND 15 CYS F 391 CYS F 525 1555 1555 2.03 SSBOND 16 CYS F 480 CYS F 488 1555 1555 2.04 LINK ND2 ASN E 343 C1 NAG E 601 1555 1555 1.44 LINK ND2 ASN F 343 C1 NAG F 601 1555 1555 1.45 CISPEP 1 PHE A 154 PRO A 155 0 -0.31 CISPEP 2 GLU A 156 PRO A 157 0 1.59 CISPEP 3 SER B 7 PRO B 8 0 -2.12 CISPEP 4 THR B 94 PRO B 95 0 -1.79 CISPEP 5 TYR B 140 PRO B 141 0 2.88 CISPEP 6 PHE C 154 PRO C 155 0 -1.34 CISPEP 7 GLU C 156 PRO C 157 0 -0.32 CISPEP 8 SER D 7 PRO D 8 0 -1.62 CISPEP 9 THR D 94 PRO D 95 0 -2.27 CISPEP 10 TYR D 140 PRO D 141 0 6.22 CRYST1 102.297 153.656 96.590 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009775 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010353 0.00000 MTRIX1 1 -0.999984 -0.004882 0.002814 -51.15455 1 MTRIX2 1 0.004881 -0.999988 -0.000425 -0.04809 1 MTRIX3 1 0.002816 -0.000411 0.999996 6.80410 1 MTRIX1 2 -0.999988 -0.004830 -0.000993 -51.23714 1 MTRIX2 2 0.004827 -0.999984 0.002918 0.01898 1 MTRIX3 2 -0.001007 0.002914 0.999995 6.85709 1 MTRIX1 3 -1.000000 0.000265 -0.000558 -51.14122 1 MTRIX2 3 -0.000264 -0.999998 -0.001730 -0.05467 1 MTRIX3 3 -0.000558 -0.001730 0.999998 -6.80722 1