HEADER TRANSFERASE 30-AUG-21 7S0H TITLE CRYSTAL STRUCTURE OF PENICILLIUM VERRUCULOSUM COPALYL DIPHOSPHATE TITLE 2 SYNTHASE (PVCPS) ALPHA PRENYLTRANSFERASE DOMAIN VARIANT, S723Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: TERPENE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PRENYLTRANSFERASE ALPHA DOMAIN, RESIDUES 659-963; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TALAROMYCES VERRUCULOSUS; SOURCE 3 ORGANISM_COMMON: PENICILLIUM VERRUCULOSUM; SOURCE 4 ORGANISM_TAXID: 198730; SOURCE 5 GENE: PVCPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PRENYLTRANSFERASE, ISOPRENOID SYNTHASE, GGPP SYNTHASE, BIFUNCTIONAL KEYWDS 2 TERPENE SYNTHASE, ASSEMBLY-LINE SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.A.RONNEBAUM,D.W.CHRISTIANSON REVDAT 4 18-OCT-23 7S0H 1 REMARK REVDAT 3 10-NOV-21 7S0H 1 JRNL REVDAT 2 20-OCT-21 7S0H 1 JRNL REVDAT 1 13-OCT-21 7S0H 0 JRNL AUTH T.A.RONNEBAUM,S.A.EATON,E.A.E.BRACKHAHN,D.W.CHRISTIANSON JRNL TITL ENGINEERING THE PRENYLTRANSFERASE DOMAIN OF A BIFUNCTIONAL JRNL TITL 2 ASSEMBLY-LINE TERPENE SYNTHASE. JRNL REF BIOCHEMISTRY V. 60 3162 2021 JRNL REFN ISSN 0006-2960 JRNL PMID 34609847 JRNL DOI 10.1021/ACS.BIOCHEM.1C00600 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 81.6400 - 9.5700 0.99 1233 143 0.1229 0.1391 REMARK 3 2 9.5500 - 7.5900 0.99 1251 137 0.1002 0.1263 REMARK 3 3 7.5900 - 6.6300 1.00 1245 148 0.1484 0.1701 REMARK 3 4 6.6300 - 6.0300 1.00 1254 128 0.1794 0.2229 REMARK 3 5 6.0200 - 5.6000 1.00 1233 138 0.1773 0.2355 REMARK 3 6 5.5900 - 5.2700 1.00 1245 143 0.1758 0.2238 REMARK 3 7 5.2600 - 5.0000 1.00 1270 148 0.1595 0.2254 REMARK 3 8 5.0000 - 4.7800 1.00 1218 132 0.1434 0.2026 REMARK 3 9 4.7800 - 4.6000 0.99 1252 140 0.1238 0.1790 REMARK 3 10 4.6000 - 4.4400 1.00 1259 136 0.1302 0.1580 REMARK 3 11 4.4400 - 4.3000 0.99 1215 138 0.1496 0.2124 REMARK 3 12 4.3000 - 4.1800 1.00 1262 146 0.1547 0.2062 REMARK 3 13 4.1800 - 4.0700 1.00 1242 136 0.1672 0.1986 REMARK 3 14 4.0700 - 3.9700 1.00 1256 145 0.1748 0.2027 REMARK 3 15 3.9700 - 3.8800 1.00 1250 134 0.1959 0.2663 REMARK 3 16 3.8800 - 3.8000 1.00 1216 132 0.1947 0.2716 REMARK 3 17 3.8000 - 3.7200 1.00 1247 134 0.2052 0.2688 REMARK 3 18 3.7200 - 3.6500 1.00 1274 146 0.2034 0.2562 REMARK 3 19 3.6500 - 3.5800 1.00 1248 140 0.2324 0.2902 REMARK 3 20 3.5800 - 3.5200 1.00 1220 136 0.2309 0.2766 REMARK 3 21 3.5200 - 3.4700 1.00 1278 133 0.2272 0.3357 REMARK 3 22 3.4700 - 3.4100 1.00 1266 140 0.2482 0.2676 REMARK 3 23 3.4100 - 3.3600 1.00 1220 136 0.2464 0.3134 REMARK 3 24 3.3600 - 3.3200 1.00 1219 136 0.2675 0.3006 REMARK 3 25 3.3200 - 3.2700 0.99 1295 141 0.2752 0.3221 REMARK 3 26 3.2700 - 3.2300 0.98 1196 128 0.2895 0.3320 REMARK 3 27 3.2300 - 3.1900 0.99 1256 141 0.3156 0.3392 REMARK 3 28 3.1900 - 3.1500 0.99 1206 137 0.3183 0.3722 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.407 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.992 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4871 REMARK 3 ANGLE : 1.369 6610 REMARK 3 CHIRALITY : 0.054 762 REMARK 3 PLANARITY : 0.008 849 REMARK 3 DIHEDRAL : 8.946 665 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 858 THROUGH 870 ) REMARK 3 ORIGIN FOR THE GROUP (A): -85.2636 41.1277 -2.0861 REMARK 3 T TENSOR REMARK 3 T11: 0.6964 T22: 0.7836 REMARK 3 T33: 0.6498 T12: -0.3990 REMARK 3 T13: -0.0953 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 4.2003 L22: 0.6374 REMARK 3 L33: -0.0013 L12: 1.6560 REMARK 3 L13: 0.4599 L23: 0.1564 REMARK 3 S TENSOR REMARK 3 S11: -0.8452 S12: 0.8486 S13: -0.8512 REMARK 3 S21: -0.9941 S22: -0.8124 S23: -0.1247 REMARK 3 S31: 2.0126 S32: -0.8267 S33: 0.3645 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 858 THROUGH 870 ) REMARK 3 ORIGIN FOR THE GROUP (A): -98.4131 39.1530 41.0925 REMARK 3 T TENSOR REMARK 3 T11: 0.5343 T22: 0.7289 REMARK 3 T33: 0.5770 T12: 0.0962 REMARK 3 T13: -0.1507 T23: 0.1315 REMARK 3 L TENSOR REMARK 3 L11: 4.8249 L22: 3.8311 REMARK 3 L33: 3.2134 L12: -2.1725 REMARK 3 L13: -0.7875 L23: -2.7581 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -1.0447 S13: -0.6940 REMARK 3 S21: 0.5253 S22: -0.0430 S23: -0.3393 REMARK 3 S31: 0.8703 S32: 2.4938 S33: 0.0147 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7S0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000259366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 143593 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 81.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6V0K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.6 2.5% REMARK 280 TACSIMATE PH 5.0 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -94.26700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 163.27523 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -188.53400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 659 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 663 CG CD OE1 NE2 REMARK 470 LYS A 688 CG CD CE NZ REMARK 470 ASN A 689 CG OD1 ND2 REMARK 470 MET A 690 CG SD CE REMARK 470 GLU A 707 CG CD OE1 OE2 REMARK 470 LYS A 714 CE NZ REMARK 470 LYS A 773 CD CE NZ REMARK 470 GLU A 805 CG CD OE1 OE2 REMARK 470 THR A 815 OG1 CG2 REMARK 470 ASP A 863 CG OD1 OD2 REMARK 470 LYS A 865 CG CD CE NZ REMARK 470 GLU A 873 CG CD OE1 OE2 REMARK 470 ARG A 902 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 921 CG CD OE1 OE2 REMARK 470 LYS A 929 CG CD CE NZ REMARK 470 LYS A 943 CG CD CE NZ REMARK 470 ARG A 958 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 659 CG OD1 OD2 REMARK 470 GLN B 663 CG CD OE1 NE2 REMARK 470 LYS B 688 CG CD CE NZ REMARK 470 ASN B 689 CG OD1 ND2 REMARK 470 MET B 690 CG SD CE REMARK 470 ARG B 691 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 693 CG CD OE1 NE2 REMARK 470 GLU B 707 CG CD OE1 OE2 REMARK 470 ILE B 734 CG1 CG2 CD1 REMARK 470 LYS B 865 CG CD CE NZ REMARK 470 LYS B 875 CG CD CE NZ REMARK 470 ARG B 902 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 918 CG OD1 ND2 REMARK 470 LYS B 943 CG CD CE NZ REMARK 470 LYS B 954 CG CD CE NZ REMARK 470 ARG B 958 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 961 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 807 OD2 ASP A 852 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 898 O ASP B 797 2565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 767 OE1 - CD - NE2 ANGL. DEV. = -16.8 DEGREES REMARK 500 GLN A 767 CG - CD - OE1 ANGL. DEV. = 28.7 DEGREES REMARK 500 GLN A 767 CG - CD - NE2 ANGL. DEV. = -38.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 736 111.26 -162.39 REMARK 500 THR A 815 48.84 -84.41 REMARK 500 LEU A 818 -60.30 -135.13 REMARK 500 GLN A 833 78.39 -102.06 REMARK 500 ASP A 863 0.71 -69.71 REMARK 500 ASN A 864 -52.80 -124.32 REMARK 500 ASN A 887 97.72 -160.08 REMARK 500 ARG A 891 34.21 -97.09 REMARK 500 SER A 916 -8.96 -57.70 REMARK 500 HIS A 944 40.43 -98.41 REMARK 500 SER A 960 38.48 -146.18 REMARK 500 LEU B 818 -68.07 -128.07 REMARK 500 LYS B 857 58.86 -142.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN A 767 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6V0K RELATED DB: PDB REMARK 900 WILD-TYPE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THE FULL-LENGTH ENZYME IS A CHIMERA, REMARK 999 CONSISTING OF 963 RESIDUES. HOWEVER, THE PROVIDED CRYSTAL STRUCTURE REMARK 999 WAS GENERATED FROM LIMITED PROTEOLYSIS EXPERIMENTS AND ONLY THE REMARK 999 PRENYLTRANSFERASE ALPHA DOMAIN OF THE CHIMERA WAS CRYSTALLIZED. THE REMARK 999 SEQUENCE OF THE FULL-LENGTH ENZYME IS: REMARK 999 MSPMDLQESAAALVRQLGERVEDRRGFGFMSPAIYDTAWVSMISKTIDDQKTWLFAECFQYILSHQLE REMARK 999 DGGWAMYASEID AILNTSASLLSLKRHLSNPYQITSITQEDLSARINRAQNALQKLLNEWNVDSTLH REMARK 999 VGFEILVPALLRYLEDEGIAFAFSG RERLLEIEKQKLSKFKAQYLYLPIKVTALHSLEAFIGAIEFD REMARK 999 KVSHHKVSGAFMASPSSTAAYMMHATQWDDECEDYLRH VIAHASGKGSGGVPSAFPSTIFESVWPLS REMARK 999 TLLKVGYDLNSAPFIEKIRSYLHDAYIAEKGILGFTPFVGADADDTATTIL VLNLLNQPVSVDAMLK REMARK 999 EFEEEHHFKTYSQERNPSFSANCNVLLALLYSQEPSLYSAQIEKAIRFLYKQFTDSEMDVRDKW NLS REMARK 999 PYYSWMLMTQAITRLTTLQKTSKLSTLRDDSISKGLISLLFRIASTVVKDQKPGGSWGTRASKEETAY REMARK 999 AVLILTYAF YLDEVTESLRHDIKIAIENGCSFLSERTMQSDSEWLWVEKVTYKSEVLSEAYILAALK REMARK 999 RAADLPDENAEAAPVINGISTN GFEHTDRINGKLKVNGTNGTNGSHETNGINGTHEIEQINGVNGTN REMARK 999 GHSDVPHDTNGWVEEPTAINETNGHYVNGTNHETP LTNGISNGDSVSVHTDHSDSYYQRSDWTADEE REMARK 999 QILLGPFDYLESLPGKNMRSQLIQSFNTWLKVPTESLDVIIKVISMLH TAYLLIDDIQDQSILRRGQ REMARK 999 REMARK 999 PVAHSIFGTAQAMNSGNYVYFLALREVQKLQNPKAISIYVDSLIDLHRGQGMELFWRDSLM CPTEEQ DBREF1 7S0H A 659 963 UNP A0A348FUE1_TALVE DBREF2 7S0H A A0A348FUE1 659 963 DBREF1 7S0H B 659 963 UNP A0A348FUE1_TALVE DBREF2 7S0H B A0A348FUE1 659 963 SEQADV 7S0H TYR A 723 UNP A0A348FUE SER 723 ENGINEERED MUTATION SEQADV 7S0H TYR B 723 UNP A0A348FUE SER 723 ENGINEERED MUTATION SEQRES 1 A 305 ASP SER TYR TYR GLN ARG SER ASP TRP THR ALA ASP GLU SEQRES 2 A 305 GLU GLN ILE LEU LEU GLY PRO PHE ASP TYR LEU GLU SER SEQRES 3 A 305 LEU PRO GLY LYS ASN MET ARG SER GLN LEU ILE GLN SER SEQRES 4 A 305 PHE ASN THR TRP LEU LYS VAL PRO THR GLU SER LEU ASP SEQRES 5 A 305 VAL ILE ILE LYS VAL ILE SER MET LEU HIS THR ALA TYR SEQRES 6 A 305 LEU LEU ILE ASP ASP ILE GLN ASP GLN SER ILE LEU ARG SEQRES 7 A 305 ARG GLY GLN PRO VAL ALA HIS SER ILE PHE GLY THR ALA SEQRES 8 A 305 GLN ALA MET ASN SER GLY ASN TYR VAL TYR PHE LEU ALA SEQRES 9 A 305 LEU ARG GLU VAL GLN LYS LEU GLN ASN PRO LYS ALA ILE SEQRES 10 A 305 SER ILE TYR VAL ASP SER LEU ILE ASP LEU HIS ARG GLY SEQRES 11 A 305 GLN GLY MET GLU LEU PHE TRP ARG ASP SER LEU MET CYS SEQRES 12 A 305 PRO THR GLU GLU GLN TYR LEU ASP MET VAL ALA ASN LYS SEQRES 13 A 305 THR GLY GLY LEU PHE CYS LEU ALA ILE GLN LEU MET GLN SEQRES 14 A 305 ALA GLU ALA THR ILE GLN VAL ASP PHE ILE PRO LEU VAL SEQRES 15 A 305 ARG LEU LEU GLY ILE ILE PHE GLN ILE CYS ASP ASP TYR SEQRES 16 A 305 LEU ASN LEU LYS SER THR ALA TYR THR ASP ASN LYS GLY SEQRES 17 A 305 LEU CYS GLU ASP LEU THR GLU GLY LYS PHE SER PHE PRO SEQRES 18 A 305 ILE ILE HIS SER ILE ARG SER ASN PRO GLY ASN ARG GLN SEQRES 19 A 305 LEU ILE ASN ILE LEU LYS GLN LYS PRO ARG GLU ASP ASP SEQRES 20 A 305 ILE LYS ARG TYR ALA LEU SER TYR MET GLU SER THR ASN SEQRES 21 A 305 SER PHE GLU TYR THR ARG GLY VAL VAL ARG LYS LEU LYS SEQRES 22 A 305 THR GLU ALA ILE ASP THR ILE GLN GLY LEU GLU LYS HIS SEQRES 23 A 305 GLY LEU GLU GLU ASN ILE GLY ILE ARG LYS ILE LEU ALA SEQRES 24 A 305 ARG MET SER LEU GLU LEU SEQRES 1 B 305 ASP SER TYR TYR GLN ARG SER ASP TRP THR ALA ASP GLU SEQRES 2 B 305 GLU GLN ILE LEU LEU GLY PRO PHE ASP TYR LEU GLU SER SEQRES 3 B 305 LEU PRO GLY LYS ASN MET ARG SER GLN LEU ILE GLN SER SEQRES 4 B 305 PHE ASN THR TRP LEU LYS VAL PRO THR GLU SER LEU ASP SEQRES 5 B 305 VAL ILE ILE LYS VAL ILE SER MET LEU HIS THR ALA TYR SEQRES 6 B 305 LEU LEU ILE ASP ASP ILE GLN ASP GLN SER ILE LEU ARG SEQRES 7 B 305 ARG GLY GLN PRO VAL ALA HIS SER ILE PHE GLY THR ALA SEQRES 8 B 305 GLN ALA MET ASN SER GLY ASN TYR VAL TYR PHE LEU ALA SEQRES 9 B 305 LEU ARG GLU VAL GLN LYS LEU GLN ASN PRO LYS ALA ILE SEQRES 10 B 305 SER ILE TYR VAL ASP SER LEU ILE ASP LEU HIS ARG GLY SEQRES 11 B 305 GLN GLY MET GLU LEU PHE TRP ARG ASP SER LEU MET CYS SEQRES 12 B 305 PRO THR GLU GLU GLN TYR LEU ASP MET VAL ALA ASN LYS SEQRES 13 B 305 THR GLY GLY LEU PHE CYS LEU ALA ILE GLN LEU MET GLN SEQRES 14 B 305 ALA GLU ALA THR ILE GLN VAL ASP PHE ILE PRO LEU VAL SEQRES 15 B 305 ARG LEU LEU GLY ILE ILE PHE GLN ILE CYS ASP ASP TYR SEQRES 16 B 305 LEU ASN LEU LYS SER THR ALA TYR THR ASP ASN LYS GLY SEQRES 17 B 305 LEU CYS GLU ASP LEU THR GLU GLY LYS PHE SER PHE PRO SEQRES 18 B 305 ILE ILE HIS SER ILE ARG SER ASN PRO GLY ASN ARG GLN SEQRES 19 B 305 LEU ILE ASN ILE LEU LYS GLN LYS PRO ARG GLU ASP ASP SEQRES 20 B 305 ILE LYS ARG TYR ALA LEU SER TYR MET GLU SER THR ASN SEQRES 21 B 305 SER PHE GLU TYR THR ARG GLY VAL VAL ARG LYS LEU LYS SEQRES 22 B 305 THR GLU ALA ILE ASP THR ILE GLN GLY LEU GLU LYS HIS SEQRES 23 B 305 GLY LEU GLU GLU ASN ILE GLY ILE ARG LYS ILE LEU ALA SEQRES 24 B 305 ARG MET SER LEU GLU LEU HELIX 1 AA1 THR A 668 LEU A 676 1 9 HELIX 2 AA2 LEU A 676 LEU A 685 1 10 HELIX 3 AA3 ASN A 689 LYS A 703 1 15 HELIX 4 AA4 PRO A 705 ASP A 731 1 27 HELIX 5 AA5 VAL A 741 GLY A 747 1 7 HELIX 6 AA6 GLY A 747 GLN A 767 1 21 HELIX 7 AA7 LYS A 768 GLN A 770 5 3 HELIX 8 AA8 ASN A 771 LEU A 799 1 29 HELIX 9 AA9 THR A 803 THR A 815 1 13 HELIX 10 AB1 LEU A 818 ALA A 830 1 13 HELIX 11 AB2 PHE A 836 SER A 858 1 23 HELIX 12 AB3 SER A 858 GLY A 866 1 9 HELIX 13 AB4 CYS A 868 GLU A 873 1 6 HELIX 14 AB5 SER A 877 ASN A 887 1 11 HELIX 15 AB6 ARG A 891 GLN A 899 1 9 HELIX 16 AB7 GLU A 903 SER A 916 1 14 HELIX 17 AB8 ASN A 918 HIS A 944 1 27 HELIX 18 AB9 ASN A 949 MET A 959 1 11 HELIX 19 AC1 THR B 668 LEU B 676 1 9 HELIX 20 AC2 LEU B 676 SER B 684 1 9 HELIX 21 AC3 ASN B 689 LYS B 703 1 15 HELIX 22 AC4 PRO B 705 GLN B 732 1 28 HELIX 23 AC5 ALA B 742 GLN B 767 1 26 HELIX 24 AC6 LYS B 768 GLN B 770 5 3 HELIX 25 AC7 PRO B 772 LEU B 799 1 28 HELIX 26 AC8 THR B 803 THR B 815 1 13 HELIX 27 AC9 LEU B 818 ALA B 830 1 13 HELIX 28 AD1 PHE B 836 LYS B 857 1 22 HELIX 29 AD2 CYS B 868 GLY B 874 1 7 HELIX 30 AD3 SER B 877 ASN B 887 1 11 HELIX 31 AD4 ARG B 891 LYS B 900 1 10 HELIX 32 AD5 GLU B 903 THR B 917 1 15 HELIX 33 AD6 ASN B 918 LYS B 943 1 26 HELIX 34 AD7 ASN B 949 MET B 959 1 11 SHEET 1 AA1 2 LEU A 735 ARG A 736 0 SHEET 2 AA1 2 GLN A 739 PRO A 740 -1 O GLN A 739 N ARG A 736 SHEET 1 AA2 2 LEU B 735 ARG B 736 0 SHEET 2 AA2 2 GLN B 739 PRO B 740 -1 O GLN B 739 N ARG B 736 CRYST1 188.534 188.534 56.442 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005304 0.003062 0.000000 0.00000 SCALE2 0.000000 0.006125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017717 0.00000