HEADER    HYDROLASE                               31-AUG-21   7S0Y              
TITLE     STRUCTURES OF TCDB IN COMPLEX WITH CDC42                              
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TOXIN B;                                                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 EC: 3.4.22.-;                                                        
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: CELL DIVISION CONTROL PROTEIN 42 HOMOLOG;                  
COMPND   8 CHAIN: B;                                                            
COMPND   9 SYNONYM: G25K GTP-BINDING PROTEIN;                                   
COMPND  10 EC: 3.6.5.2;                                                         
COMPND  11 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE;                       
SOURCE   3 ORGANISM_COMMON: PEPTOCLOSTRIDIUM DIFFICILE;                         
SOURCE   4 ORGANISM_TAXID: 1496;                                                
SOURCE   5 GENE: TCDB, TOXB;                                                    
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  10 ORGANISM_COMMON: HUMAN;                                              
SOURCE  11 ORGANISM_TAXID: 9606;                                                
SOURCE  12 GENE: CDC42;                                                         
SOURCE  13 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  14 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    TOXIN, SUBSTRATE, ENZYME, HYDROLASE                                   
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    L.ZHENG,J.RONGSHENG,C.PENG                                            
REVDAT   3   18-OCT-23 7S0Y    1       REMARK                                   
REVDAT   2   23-MAR-22 7S0Y    1       JRNL                                     
REVDAT   1   08-SEP-21 7S0Y    0                                                
JRNL        AUTH   Z.LIU,S.ZHANG,P.CHEN,S.TIAN,J.ZENG,K.PERRY,M.DONG,R.JIN      
JRNL        TITL   STRUCTURAL BASIS FOR SELECTIVE MODIFICATION OF RHO AND RAS   
JRNL        TITL 2 GTPASES BY CLOSTRIDIOIDES DIFFICILE TOXIN B.                 
JRNL        REF    SCI ADV                       V.   7 I4582 2021              
JRNL        REFN                   ESSN 2375-2548                               
JRNL        PMID   34678063                                                     
JRNL        DOI    10.1126/SCIADV.ABI4582                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.79 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.8.0258                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 92.40                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 23173                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.217                           
REMARK   3   R VALUE            (WORKING SET) : 0.214                           
REMARK   3   FREE R VALUE                     : 0.259                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1241                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.79                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.86                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1715                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 99.94                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2980                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 84                           
REMARK   3   BIN FREE R VALUE                    : 0.3720                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 5787                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 110                                     
REMARK   3   SOLVENT ATOMS            : 23                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 77.17                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -1.82000                                             
REMARK   3    B22 (A**2) : 4.68000                                              
REMARK   3    B33 (A**2) : -2.86000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): NULL          
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.372         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.329         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.558        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.947                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.935                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  5998 ; 0.004 ; 0.013       
REMARK   3   BOND LENGTHS OTHERS               (A):  5373 ; 0.001 ; 0.017       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  8136 ; 1.310 ; 1.656       
REMARK   3   BOND ANGLES OTHERS          (DEGREES): 12539 ; 1.159 ; 1.581       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   720 ; 6.350 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   314 ;34.721 ;24.809       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):  1058 ;14.801 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    20 ;15.100 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   790 ; 0.051 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  6599 ; 0.004 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):  1173 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  2886 ; 4.524 ; 8.255       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  2885 ; 4.512 ; 8.253       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  3604 ; 6.994 ;12.378       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  3605 ; 6.996 ;12.381       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  3112 ; 4.198 ; 8.573       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  3060 ; 4.124 ; 8.522       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  4454 ; 6.460 ;12.646       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  6627 ; 9.514 ;95.088       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  6621 ; 9.517 ;95.104       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 7S0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-21.                  
REMARK 100 THE DEPOSITION ID IS D_1000259391.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 12-JUL-18                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : NULL                               
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 24-ID-C                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97918                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS EIGER X 16M                
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XDS                                
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 24433                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.790                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 111.800                            
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY                : 6.700                              
REMARK 200  R MERGE                    (I) : 0.06300                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 16.9000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.94                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.900                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHENIX                                                
REMARK 200 STARTING MODEL: 2BVM                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 57.67                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE (PH 6.6), 2.4    
REMARK 280  M AMMONIUM SULFATE, AND 2.5% (V/V) JEFFAMINE M-600 (PH 7.0),        
REMARK 280  VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K                     
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -X,Y,-Z+1/2                                             
REMARK 290       4555   X,-Y,-Z                                                 
REMARK 290       5555   X+1/2,Y+1/2,Z                                           
REMARK 290       6555   -X+1/2,-Y+1/2,Z+1/2                                     
REMARK 290       7555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290       8555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       55.90150            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       55.90150            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000       61.17700            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       70.47400            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   6 -1.000000  0.000000  0.000000       61.17700            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       70.47400            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       55.90150            
REMARK 290   SMTRY1   7 -1.000000  0.000000  0.000000       61.17700            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       70.47400            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       55.90150            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000       61.17700            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000       70.47400            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 6750 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 31600 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -181.0 KCAL/MOL                       
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     ARG A   6    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LYS A   7    CG   CD   CE   NZ                                   
REMARK 470     LYS A  65    CG   CD   CE   NZ                                   
REMARK 470     GLU A 159    CG   CD   OE1  OE2                                  
REMARK 470     LEU A 161    CG   CD1  CD2                                       
REMARK 470     ASP A 163    CG   OD1  OD2                                       
REMARK 470     PHE A 539    CG   CD1  CD2  CE1  CE2  CZ                         
REMARK 470     LYS B   2    CG   CD   CE   NZ                                   
REMARK 470     LEU B   3    CG   CD1  CD2                                       
REMARK 470     ARG B 120    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LYS B 150    CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLN A  20       95.93    -66.43                                   
REMARK 500    ASN A  36       47.84    -91.74                                   
REMARK 500    ASN A  89      -64.52    -96.42                                   
REMARK 500    ASN A 122       48.36   -144.62                                   
REMARK 500    ALA A 135       29.28   -143.27                                   
REMARK 500    ASP A 163       82.48   -163.48                                   
REMARK 500    ARG A 165       35.62   -148.96                                   
REMARK 500    PHE A 166       60.66   -106.56                                   
REMARK 500    PHE A 298       -7.50     67.15                                   
REMARK 500    GLU A 299       44.19    -82.61                                   
REMARK 500    SER A 300      -40.08   -130.30                                   
REMARK 500    ILE A 359      -51.84   -126.27                                   
REMARK 500    ASN A 440     -165.96   -126.68                                   
REMARK 500    PHE A 484       52.88     36.26                                   
REMARK 500    MET A 489      -59.05   -120.88                                   
REMARK 500    ASP B  38      -70.16    -62.94                                   
REMARK 500    LYS B  96      -61.07   -120.28                                   
REMARK 500    LYS B 163      -71.46    -60.03                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MN A 601  MN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 288   OD2                                                    
REMARK 620 2 GLU A 515   OE1  84.0                                              
REMARK 620 3 UDP A 602   O1A  83.7 154.5                                        
REMARK 620 4 UDP A 602   O1B 170.0 105.0  86.3                                  
REMARK 620 5 HOH A 710   O    92.9  78.9  79.5  84.6                            
REMARK 620 6 HOH A 711   O    82.2  94.0 106.3 101.4 171.8                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG B 202  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR B  17   OG1                                                    
REMARK 620 2 GDP B 201   O2B  82.5                                              
REMARK 620 3 HOH B 303   O    79.6  90.1                                        
REMARK 620 4 HOH B 304   O   173.9  98.9 106.3                                  
REMARK 620 5 HOH B 305   O    93.0 100.6 166.2  80.9                            
REMARK 620 6 HOH B 306   O    76.2 158.4  89.6 101.9  77.3                      
REMARK 620 N                    1     2     3     4     5                       
DBREF  7S0Y A    1   540  UNP    P18177   TCDB_CLODI       1    540             
DBREF  7S0Y B    4   179  UNP    P60953   CDC42_HUMAN      4    179             
SEQADV 7S0Y GLY A   -1  UNP  P18177              EXPRESSION TAG                 
SEQADV 7S0Y GLY A    0  UNP  P18177              EXPRESSION TAG                 
SEQADV 7S0Y SER A  395  UNP  P18177    CYS   395 CONFLICT                       
SEQADV 7S0Y GLY B    0  UNP  P60953              EXPRESSION TAG                 
SEQADV 7S0Y SER B    1  UNP  P60953              EXPRESSION TAG                 
SEQADV 7S0Y LYS B    2  UNP  P60953              EXPRESSION TAG                 
SEQADV 7S0Y LEU B    3  UNP  P60953              EXPRESSION TAG                 
SEQADV 7S0Y ASN B   35  UNP  P60953    THR    35 CONFLICT                       
SEQRES   1 A  542  GLY GLY MET SER LEU VAL ASN ARG LYS GLN LEU GLU LYS          
SEQRES   2 A  542  MET ALA ASN VAL ARG PHE ARG THR GLN GLU ASP GLU TYR          
SEQRES   3 A  542  VAL ALA ILE LEU ASP ALA LEU GLU GLU TYR HIS ASN MET          
SEQRES   4 A  542  SER GLU ASN THR VAL VAL GLU LYS TYR LEU LYS LEU LYS          
SEQRES   5 A  542  ASP ILE ASN SER LEU THR ASP ILE TYR ILE ASP THR TYR          
SEQRES   6 A  542  LYS LYS SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS          
SEQRES   7 A  542  GLU TYR LEU VAL THR GLU VAL LEU GLU LEU LYS ASN ASN          
SEQRES   8 A  542  ASN LEU THR PRO VAL GLU LYS ASN LEU HIS PHE VAL TRP          
SEQRES   9 A  542  ILE GLY GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE          
SEQRES  10 A  542  ASN GLN TRP LYS ASP VAL ASN SER ASP TYR ASN VAL ASN          
SEQRES  11 A  542  VAL PHE TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU          
SEQRES  12 A  542  LYS LYS THR VAL VAL GLU SER ALA ILE ASN ASP THR LEU          
SEQRES  13 A  542  GLU SER PHE ARG GLU ASN LEU ASN ASP PRO ARG PHE ASP          
SEQRES  14 A  542  TYR ASN LYS PHE PHE ARG LYS ARG MET GLU ILE ILE TYR          
SEQRES  15 A  542  ASP LYS GLN LYS ASN PHE ILE ASN TYR TYR LYS ALA GLN          
SEQRES  16 A  542  ARG GLU GLU ASN PRO GLU LEU ILE ILE ASP ASP ILE VAL          
SEQRES  17 A  542  LYS THR TYR LEU SER ASN GLU TYR SER LYS GLU ILE ASP          
SEQRES  18 A  542  GLU LEU ASN THR TYR ILE GLU GLU SER LEU ASN LYS ILE          
SEQRES  19 A  542  THR GLN ASN SER GLY ASN ASP VAL ARG ASN PHE GLU GLU          
SEQRES  20 A  542  PHE LYS ASN GLY GLU SER PHE ASN LEU TYR GLU GLN GLU          
SEQRES  21 A  542  LEU VAL GLU ARG TRP ASN LEU ALA ALA ALA SER ASP ILE          
SEQRES  22 A  542  LEU ARG ILE SER ALA LEU LYS GLU ILE GLY GLY MET TYR          
SEQRES  23 A  542  LEU ASP VAL ASP MET LEU PRO GLY ILE GLN PRO ASP LEU          
SEQRES  24 A  542  PHE GLU SER ILE GLU LYS PRO SER SER VAL THR VAL ASP          
SEQRES  25 A  542  PHE TRP GLU MET THR LYS LEU GLU ALA ILE MET LYS TYR          
SEQRES  26 A  542  LYS GLU TYR ILE PRO GLU TYR THR SER GLU HIS PHE ASP          
SEQRES  27 A  542  MET LEU ASP GLU GLU VAL GLN SER SER PHE GLU SER VAL          
SEQRES  28 A  542  LEU ALA SER LYS SER ASP LYS SER GLU ILE PHE SER SER          
SEQRES  29 A  542  LEU GLY ASP MET GLU ALA SER PRO LEU GLU VAL LYS ILE          
SEQRES  30 A  542  ALA PHE ASN SER LYS GLY ILE ILE ASN GLN GLY LEU ILE          
SEQRES  31 A  542  SER VAL LYS ASP SER TYR SER SER ASN LEU ILE VAL LYS          
SEQRES  32 A  542  GLN ILE GLU ASN ARG TYR LYS ILE LEU ASN ASN SER LEU          
SEQRES  33 A  542  ASN PRO ALA ILE SER GLU ASP ASN ASP PHE ASN THR THR          
SEQRES  34 A  542  THR ASN THR PHE ILE ASP SER ILE MET ALA GLU ALA ASN          
SEQRES  35 A  542  ALA ASP ASN GLY ARG PHE MET MET GLU LEU GLY LYS TYR          
SEQRES  36 A  542  LEU ARG VAL GLY PHE PHE PRO ASP VAL LYS THR THR ILE          
SEQRES  37 A  542  ASN LEU SER GLY PRO GLU ALA TYR ALA ALA ALA TYR GLN          
SEQRES  38 A  542  ASP LEU LEU MET PHE LYS GLU GLY SER MET ASN ILE HIS          
SEQRES  39 A  542  LEU ILE GLU ALA ASP LEU ARG ASN PHE GLU ILE SER LYS          
SEQRES  40 A  542  THR ASN ILE SER GLN SER THR GLU GLN GLU MET ALA SER          
SEQRES  41 A  542  LEU TRP SER PHE ASP ASP ALA ARG ALA LYS ALA GLN PHE          
SEQRES  42 A  542  GLU GLU TYR LYS ARG ASN TYR PHE GLU                          
SEQRES   1 B  180  GLY SER LYS LEU ILE LYS CYS VAL VAL VAL GLY ASP GLY          
SEQRES   2 B  180  ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR          
SEQRES   3 B  180  ASN LYS PHE PRO SER GLU TYR VAL PRO ASN VAL PHE ASP          
SEQRES   4 B  180  ASN TYR ALA VAL THR VAL MET ILE GLY GLY GLU PRO TYR          
SEQRES   5 B  180  THR LEU GLY LEU PHE ASP THR ALA GLY GLN GLU ASP TYR          
SEQRES   6 B  180  ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL          
SEQRES   7 B  180  PHE LEU VAL CYS PHE SER VAL VAL SER PRO SER SER PHE          
SEQRES   8 B  180  GLU ASN VAL LYS GLU LYS TRP VAL PRO GLU ILE THR HIS          
SEQRES   9 B  180  HIS CYS PRO LYS THR PRO PHE LEU LEU VAL GLY THR GLN          
SEQRES  10 B  180  ILE ASP LEU ARG ASP ASP PRO SER THR ILE GLU LYS LEU          
SEQRES  11 B  180  ALA LYS ASN LYS GLN LYS PRO ILE THR PRO GLU THR ALA          
SEQRES  12 B  180  GLU LYS LEU ALA ARG ASP LEU LYS ALA VAL LYS TYR VAL          
SEQRES  13 B  180  GLU CYS SER ALA LEU THR GLN LYS GLY LEU LYS ASN VAL          
SEQRES  14 B  180  PHE ASP GLU ALA ILE LEU ALA ALA LEU GLU PRO                  
HET     MN  A 601       1                                                       
HET    UDP  A 602      25                                                       
HET    SO4  A 603       5                                                       
HET    SO4  A 604       5                                                       
HET    SO4  A 605       5                                                       
HET    SO4  A 606       5                                                       
HET    SO4  A 607       5                                                       
HET    SO4  A 608       5                                                       
HET    SO4  A 609       5                                                       
HET    SO4  A 610       5                                                       
HET    SO4  A 611       5                                                       
HET    GDP  B 201      28                                                       
HET     MG  B 202       1                                                       
HET    SO4  B 203       5                                                       
HET    SO4  B 204       5                                                       
HETNAM      MN MANGANESE (II) ION                                               
HETNAM     UDP URIDINE-5'-DIPHOSPHATE                                           
HETNAM     SO4 SULFATE ION                                                      
HETNAM     GDP GUANOSINE-5'-DIPHOSPHATE                                         
HETNAM      MG MAGNESIUM ION                                                    
FORMUL   3   MN    MN 2+                                                        
FORMUL   4  UDP    C9 H14 N2 O12 P2                                             
FORMUL   5  SO4    11(O4 S 2-)                                                  
FORMUL  14  GDP    C10 H15 N5 O11 P2                                            
FORMUL  15   MG    MG 2+                                                        
FORMUL  18  HOH   *23(H2 O)                                                     
HELIX    1 AA1 ASN A    5  ASN A   14  1                                  10    
HELIX    2 AA2 GLU A   21  ASN A   36  1                                  16    
HELIX    3 AA3 THR A   41  TYR A   63  1                                  23    
HELIX    4 AA4 ARG A   68  ASN A   90  1                                  23    
HELIX    5 AA5 ASN A  108  ASP A  120  1                                  13    
HELIX    6 AA6 LEU A  137  GLU A  159  1                                  23    
HELIX    7 AA7 ASP A  167  ASN A  197  1                                  31    
HELIX    8 AA8 ILE A  201  SER A  215  1                                  15    
HELIX    9 AA9 GLU A  217  THR A  233  1                                  17    
HELIX   10 AB1 PHE A  243  GLY A  249  1                                   7    
HELIX   11 AB2 SER A  251  GLU A  261  1                                  11    
HELIX   12 AB3 ASN A  264  GLY A  281  1                                  18    
HELIX   13 AB4 THR A  308  GLU A  325  1                                  18    
HELIX   14 AB5 HIS A  334  LEU A  338  5                                   5    
HELIX   15 AB6 ASP A  339  SER A  352  1                                  14    
HELIX   16 AB7 ASP A  355  ILE A  359  5                                   5    
HELIX   17 AB8 SER A  393  SER A  419  1                                  27    
HELIX   18 AB9 ASP A  423  ALA A  439  1                                  17    
HELIX   19 AC1 ASN A  443  GLY A  451  1                                   9    
HELIX   20 AC2 LYS A  452  VAL A  456  5                                   5    
HELIX   21 AC3 LYS A  463  SER A  469  1                                   7    
HELIX   22 AC4 GLY A  470  MET A  483  1                                  14    
HELIX   23 AC5 ILE A  494  ARG A  499  1                                   6    
HELIX   24 AC6 ASN A  500  GLU A  502  5                                   3    
HELIX   25 AC7 ASP A  523  GLU A  540  1                                  18    
HELIX   26 AC8 GLY B   15  ASN B   26  1                                  12    
HELIX   27 AC9 GLN B   61  ASP B   65  5                                   5    
HELIX   28 AD1 LEU B   67  TYR B   72  5                                   6    
HELIX   29 AD2 SER B   86  LYS B   96  1                                  11    
HELIX   30 AD3 LYS B   96  CYS B  105  1                                  10    
HELIX   31 AD4 GLN B  116  ARG B  120  5                                   5    
HELIX   32 AD5 ASP B  122  ALA B  130  1                                   9    
HELIX   33 AD6 THR B  138  LEU B  149  1                                  12    
HELIX   34 AD7 GLY B  164  ALA B  176  1                                  13    
SHEET    1 AA1 2 THR A  92  PRO A  93  0                                        
SHEET    2 AA1 2 GLU A 367  ALA A 368 -1  O  ALA A 368   N  THR A  92           
SHEET    1 AA2 6 GLY A 237  ASP A 239  0                                        
SHEET    2 AA2 6 ASN A 126  TYR A 131  1  N  VAL A 129   O  ASN A 238           
SHEET    3 AA2 6 ASN A  97  VAL A 101  1  N  PHE A 100   O  ASN A 128           
SHEET    4 AA2 6 GLY A 282  LEU A 285  1  O  MET A 283   N  ASN A  97           
SHEET    5 AA2 6 GLY A 381  SER A 389 -1  O  SER A 389   N  GLY A 282           
SHEET    6 AA2 6 VAL A 373  ASN A 378 -1  N  ASN A 378   O  GLY A 381           
SHEET    1 AA3 2 LEU A 290  PRO A 291  0                                        
SHEET    2 AA3 2 ILE A 508  SER A 509 -1  O  SER A 509   N  LEU A 290           
SHEET    1 AA4 6 ALA B  41  ILE B  46  0                                        
SHEET    2 AA4 6 GLU B  49  PHE B  56 -1  O  LEU B  53   N  VAL B  42           
SHEET    3 AA4 6 LYS B   2  GLY B  10  1  N  CYS B   6   O  GLY B  54           
SHEET    4 AA4 6 VAL B  77  SER B  83  1  O  LEU B  79   N  VAL B   9           
SHEET    5 AA4 6 PHE B 110  THR B 115  1  O  VAL B 113   N  VAL B  80           
SHEET    6 AA4 6 TYR B 154  GLU B 156  1  O  VAL B 155   N  GLY B 114           
LINK         OD2 ASP A 288                MN    MN A 601     1555   1555  2.10  
LINK         OE1 GLU A 515                MN    MN A 601     1555   1555  2.28  
LINK        MN    MN A 601                 O1A UDP A 602     1555   1555  1.98  
LINK        MN    MN A 601                 O1B UDP A 602     1555   1555  2.06  
LINK        MN    MN A 601                 O   HOH A 710     1555   1555  2.01  
LINK        MN    MN A 601                 O   HOH A 711     1555   1555  2.42  
LINK         OG1 THR B  17                MG    MG B 202     1555   1555  2.24  
LINK         O2B GDP B 201                MG    MG B 202     1555   1555  2.20  
LINK        MG    MG B 202                 O   HOH B 303     1555   1555  1.86  
LINK        MG    MG B 202                 O   HOH B 304     1555   1555  1.95  
LINK        MG    MG B 202                 O   HOH B 305     1555   1555  1.77  
LINK        MG    MG B 202                 O   HOH B 306     1555   1555  2.44  
CRYST1  122.354  140.948  111.803  90.00  90.00  90.00 C 2 2 21      8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.008173  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.007095  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.008944        0.00000