data_7SAM # _entry.id 7SAM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.393 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7SAM pdb_00007sam 10.2210/pdb7sam/pdb WWPDB D_1000259927 ? ? EMDB EMD-24952 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-12-01 2 'Structure model' 1 1 2024-06-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7SAM _pdbx_database_status.recvd_initial_deposition_date 2021-09-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'tRNA-like Structure from Brome Mosaic Virus' _pdbx_database_related.db_id EMD-24952 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kieft, J.S.' 1 0000-0002-3718-1891 'Bonilla, S.L.' 2 0000-0002-6526-7158 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 374 _citation.language ? _citation.page_first 955 _citation.page_last 960 _citation.title 'A viral RNA hijacks host machinery using dynamic conformational changes of a tRNA-like structure.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.abe8526 _citation.pdbx_database_id_PubMed 34793227 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bonilla, S.L.' 1 0000-0002-6526-7158 primary 'Sherlock, M.E.' 2 0000-0002-6471-4243 primary 'MacFadden, A.' 3 0000-0002-5960-6109 primary 'Kieft, J.S.' 4 0000-0002-3718-1891 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Viral RNA' _entity.formula_weight 55044.559 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGCGUGGUUGACACGCAGACCUCUUACAAGAGUGUCUAGGUGCCUUUGAGAGUUACUCUUUGCUCUCUUCGGAAGAACCC UUAGGGGUUCGUGCAUGGGCUUGCAUAGCAAGUCUUAGAAUGCGGGUACCGUACAGUGUUGAAAAACACUGUAAAUCUCU AAAAGAGACCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GGCGUGGUUGACACGCAGACCUCUUACAAGAGUGUCUAGGUGCCUUUGAGAGUUACUCUUUGCUCUCUUCGGAAGAACCC UUAGGGGUUCGUGCAUGGGCUUGCAUAGCAAGUCUUAGAAUGCGGGUACCGUACAGUGUUGAAAAACACUGUAAAUCUCU AAAAGAGACCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 U n 1 6 G n 1 7 G n 1 8 U n 1 9 U n 1 10 G n 1 11 A n 1 12 C n 1 13 A n 1 14 C n 1 15 G n 1 16 C n 1 17 A n 1 18 G n 1 19 A n 1 20 C n 1 21 C n 1 22 U n 1 23 C n 1 24 U n 1 25 U n 1 26 A n 1 27 C n 1 28 A n 1 29 A n 1 30 G n 1 31 A n 1 32 G n 1 33 U n 1 34 G n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 G n 1 40 G n 1 41 U n 1 42 G n 1 43 C n 1 44 C n 1 45 U n 1 46 U n 1 47 U n 1 48 G n 1 49 A n 1 50 G n 1 51 A n 1 52 G n 1 53 U n 1 54 U n 1 55 A n 1 56 C n 1 57 U n 1 58 C n 1 59 U n 1 60 U n 1 61 U n 1 62 G n 1 63 C n 1 64 U n 1 65 C n 1 66 U n 1 67 C n 1 68 U n 1 69 U n 1 70 C n 1 71 G n 1 72 G n 1 73 A n 1 74 A n 1 75 G n 1 76 A n 1 77 A n 1 78 C n 1 79 C n 1 80 C n 1 81 U n 1 82 U n 1 83 A n 1 84 G n 1 85 G n 1 86 G n 1 87 G n 1 88 U n 1 89 U n 1 90 C n 1 91 G n 1 92 U n 1 93 G n 1 94 C n 1 95 A n 1 96 U n 1 97 G n 1 98 G n 1 99 G n 1 100 C n 1 101 U n 1 102 U n 1 103 G n 1 104 C n 1 105 A n 1 106 U n 1 107 A n 1 108 G n 1 109 C n 1 110 A n 1 111 A n 1 112 G n 1 113 U n 1 114 C n 1 115 U n 1 116 U n 1 117 A n 1 118 G n 1 119 A n 1 120 A n 1 121 U n 1 122 G n 1 123 C n 1 124 G n 1 125 G n 1 126 G n 1 127 U n 1 128 A n 1 129 C n 1 130 C n 1 131 G n 1 132 U n 1 133 A n 1 134 C n 1 135 A n 1 136 G n 1 137 U n 1 138 G n 1 139 U n 1 140 U n 1 141 G n 1 142 A n 1 143 A n 1 144 A n 1 145 A n 1 146 A n 1 147 C n 1 148 A n 1 149 C n 1 150 U n 1 151 G n 1 152 U n 1 153 A n 1 154 A n 1 155 A n 1 156 U n 1 157 C n 1 158 U n 1 159 C n 1 160 U n 1 161 A n 1 162 A n 1 163 A n 1 164 A n 1 165 G n 1 166 A n 1 167 G n 1 168 A n 1 169 C n 1 170 C n 1 171 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 171 _pdbx_entity_src_syn.organism_scientific 'Brome mosaic virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 12302 _pdbx_entity_src_syn.details 'In vitro transcribed' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 -1 ? ? ? A . n A 1 2 G 2 0 ? ? ? A . n A 1 3 C 3 1 1 C C A . n A 1 4 G 4 2 2 G G A . n A 1 5 U 5 3 3 U U A . n A 1 6 G 6 4 4 G G A . n A 1 7 G 7 5 5 G G A . n A 1 8 U 8 6 6 U U A . n A 1 9 U 9 7 7 U U A . n A 1 10 G 10 8 8 G G A . n A 1 11 A 11 9 9 A A A . n A 1 12 C 12 10 10 C C A . n A 1 13 A 13 11 11 A A A . n A 1 14 C 14 12 12 C C A . n A 1 15 G 15 13 13 G G A . n A 1 16 C 16 14 14 C C A . n A 1 17 A 17 15 15 A A A . n A 1 18 G 18 16 16 G G A . n A 1 19 A 19 17 17 A A A . n A 1 20 C 20 18 18 C C A . n A 1 21 C 21 19 19 C C A . n A 1 22 U 22 20 20 U U A . n A 1 23 C 23 21 21 C C A . n A 1 24 U 24 22 22 U U A . n A 1 25 U 25 23 23 U U A . n A 1 26 A 26 24 24 A A A . n A 1 27 C 27 25 25 C C A . n A 1 28 A 28 26 26 A A A . n A 1 29 A 29 27 27 A A A . n A 1 30 G 30 28 28 G G A . n A 1 31 A 31 29 29 A A A . n A 1 32 G 32 30 30 G G A . n A 1 33 U 33 31 31 U U A . n A 1 34 G 34 32 32 G G A . n A 1 35 U 35 33 33 U U A . n A 1 36 C 36 34 34 C C A . n A 1 37 U 37 35 35 U U A . n A 1 38 A 38 36 36 A A A . n A 1 39 G 39 37 37 G G A . n A 1 40 G 40 38 38 G G A . n A 1 41 U 41 39 39 U U A . n A 1 42 G 42 40 40 G G A . n A 1 43 C 43 41 41 C C A . n A 1 44 C 44 42 42 C C A . n A 1 45 U 45 43 43 U U A . n A 1 46 U 46 44 44 U U A . n A 1 47 U 47 45 45 U U A . n A 1 48 G 48 46 46 G G A . n A 1 49 A 49 47 47 A A A . n A 1 50 G 50 48 48 G G A . n A 1 51 A 51 49 49 A A A . n A 1 52 G 52 50 50 G G A . n A 1 53 U 53 51 51 U U A . n A 1 54 U 54 52 52 U U A . n A 1 55 A 55 53 53 A A A . n A 1 56 C 56 54 54 C C A . n A 1 57 U 57 55 55 U U A . n A 1 58 C 58 56 56 C C A . n A 1 59 U 59 57 57 U U A . n A 1 60 U 60 58 58 U U A . n A 1 61 U 61 59 59 U U A . n A 1 62 G 62 60 60 G G A . n A 1 63 C 63 61 61 C C A . n A 1 64 U 64 62 62 U U A . n A 1 65 C 65 63 63 C C A . n A 1 66 U 66 64 64 U U A . n A 1 67 C 67 65 65 C C A . n A 1 68 U 68 66 66 U U A . n A 1 69 U 69 67 67 U U A . n A 1 70 C 70 68 68 C C A . n A 1 71 G 71 69 69 G G A . n A 1 72 G 72 70 70 G G A . n A 1 73 A 73 71 71 A A A . n A 1 74 A 74 72 72 A A A . n A 1 75 G 75 73 73 G G A . n A 1 76 A 76 74 74 A A A . n A 1 77 A 77 75 75 A A A . n A 1 78 C 78 76 76 C C A . n A 1 79 C 79 77 77 C C A . n A 1 80 C 80 78 78 C C A . n A 1 81 U 81 79 79 U U A . n A 1 82 U 82 80 80 U U A . n A 1 83 A 83 81 81 A A A . n A 1 84 G 84 82 82 G G A . n A 1 85 G 85 83 83 G G A . n A 1 86 G 86 84 84 G G A . n A 1 87 G 87 85 85 G G A . n A 1 88 U 88 86 86 U U A . n A 1 89 U 89 87 87 U U A . n A 1 90 C 90 88 88 C C A . n A 1 91 G 91 89 89 G G A . n A 1 92 U 92 90 90 U U A . n A 1 93 G 93 91 91 G G A . n A 1 94 C 94 92 92 C C A . n A 1 95 A 95 93 93 A A A . n A 1 96 U 96 94 94 U U A . n A 1 97 G 97 95 95 G G A . n A 1 98 G 98 96 96 G G A . n A 1 99 G 99 97 97 G G A . n A 1 100 C 100 98 98 C C A . n A 1 101 U 101 99 99 U U A . n A 1 102 U 102 100 100 U U A . n A 1 103 G 103 101 101 G G A . n A 1 104 C 104 102 102 C C A . n A 1 105 A 105 103 103 A A A . n A 1 106 U 106 104 104 U U A . n A 1 107 A 107 105 105 A A A . n A 1 108 G 108 106 106 G G A . n A 1 109 C 109 107 107 C C A . n A 1 110 A 110 108 108 A A A . n A 1 111 A 111 109 109 A A A . n A 1 112 G 112 110 110 G G A . n A 1 113 U 113 111 111 U U A . n A 1 114 C 114 112 112 C C A . n A 1 115 U 115 113 113 U U A . n A 1 116 U 116 114 114 U U A . n A 1 117 A 117 115 115 A A A . n A 1 118 G 118 116 116 G G A . n A 1 119 A 119 117 117 A A A . n A 1 120 A 120 118 118 A A A . n A 1 121 U 121 119 119 U U A . n A 1 122 G 122 120 120 G G A . n A 1 123 C 123 121 121 C C A . n A 1 124 G 124 122 122 G G A . n A 1 125 G 125 123 123 G G A . n A 1 126 G 126 124 124 G G A . n A 1 127 U 127 125 125 U U A . n A 1 128 A 128 126 126 A A A . n A 1 129 C 129 127 127 C C A . n A 1 130 C 130 128 128 C C A . n A 1 131 G 131 129 129 G G A . n A 1 132 U 132 130 130 U U A . n A 1 133 A 133 131 131 A A A . n A 1 134 C 134 132 132 C C A . n A 1 135 A 135 133 133 A A A . n A 1 136 G 136 134 134 G G A . n A 1 137 U 137 135 135 U U A . n A 1 138 G 138 136 136 G G A . n A 1 139 U 139 137 137 U U A . n A 1 140 U 140 138 138 U U A . n A 1 141 G 141 139 139 G G A . n A 1 142 A 142 140 140 A A A . n A 1 143 A 143 141 141 A A A . n A 1 144 A 144 142 142 A A A . n A 1 145 A 145 143 143 A A A . n A 1 146 A 146 144 144 A A A . n A 1 147 C 147 145 145 C C A . n A 1 148 A 148 146 146 A A A . n A 1 149 C 149 147 147 C C A . n A 1 150 U 150 148 148 U U A . n A 1 151 G 151 149 149 G G A . n A 1 152 U 152 150 150 U U A . n A 1 153 A 153 151 151 A A A . n A 1 154 A 154 152 152 A A A . n A 1 155 A 155 153 153 A A A . n A 1 156 U 156 154 154 U U A . n A 1 157 C 157 155 155 C C A . n A 1 158 U 158 156 156 U U A . n A 1 159 C 159 157 157 C C A . n A 1 160 U 160 158 158 U U A . n A 1 161 A 161 159 159 A A A . n A 1 162 A 162 160 160 A A A . n A 1 163 A 163 161 161 A A A . n A 1 164 A 164 162 162 A A A . n A 1 165 G 165 163 163 G G A . n A 1 166 A 166 164 164 A A A . n A 1 167 G 167 165 165 G G A . n A 1 168 A 168 166 166 A A A . n A 1 169 C 169 167 167 C C A . n A 1 170 C 170 168 168 C C A . n A 1 171 A 171 169 169 A A A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7SAM _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7SAM _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 103.85 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7SAM _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0013 ? 4021 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.3900 ? 6263 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.0216 ? 845 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0029 ? 169 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 13.2825 ? 2025 ? f_dihedral_angle_d ? ? # _struct.entry_id 7SAM _struct.title 'tRNA-like Structure from Brome Mosaic Virus' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7SAM _struct_keywords.text ;Viral RNA, 3' UTR, RNA ; _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7SAM _struct_ref.pdbx_db_accession 7SAM _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7SAM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 171 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7SAM _struct_ref_seq.db_align_beg -1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 169 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 169 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details 'Conformational heterogeneity was assessed using gel electrophoresis under native conditions.' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 1 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 1 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 1 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 2 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 2 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 2 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 13 N1 ? ? A U 3 A A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 13 N6 ? ? A U 3 A A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 12 N3 ? ? A G 4 A C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 12 O2 ? ? A G 4 A C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 12 N4 ? ? A G 4 A C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N7 ? ? ? 1_555 A A 155 N6 ? ? A G 4 A A 153 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog13 hydrog ? ? A G 7 N2 ? ? ? 1_555 A A 11 N7 ? ? A G 5 A A 9 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? A G 7 N3 ? ? ? 1_555 A A 11 N6 ? ? A G 5 A A 9 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 A U 156 O4 ? ? A G 5 A U 154 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 A U 156 N3 ? ? A G 5 A U 154 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog17 hydrog ? ? A A 13 N6 ? ? ? 1_555 A A 155 N7 ? ? A A 11 A A 153 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog18 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 37 N3 ? ? A A 15 A U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 37 O4 ? ? A A 15 A U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 16 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 16 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 16 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 19 N1 ? ? ? 1_555 A U 35 N3 ? ? A A 17 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 19 N6 ? ? ? 1_555 A U 35 O4 ? ? A A 17 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 18 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 18 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 18 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 19 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 19 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 19 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 20 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 20 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 21 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 21 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 21 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 24 N3 ? ? ? 1_555 A A 29 N1 ? ? A U 22 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 24 O4 ? ? ? 1_555 A A 29 N6 ? ? A U 22 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 25 O2 ? ? ? 1_555 A A 28 N6 ? ? A U 23 A A 26 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog39 hydrog ? ? A U 25 O2 ? ? ? 1_555 A A 29 N6 ? ? A U 23 A A 27 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog40 hydrog ? ? A G 39 N1 ? ? ? 1_555 A C 130 N3 ? ? A G 37 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 39 N2 ? ? ? 1_555 A C 130 O2 ? ? A G 37 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 39 O6 ? ? ? 1_555 A C 130 N4 ? ? A G 37 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 40 N1 ? ? ? 1_555 A C 129 N3 ? ? A G 38 A C 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 40 N2 ? ? ? 1_555 A C 129 O2 ? ? A G 38 A C 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 40 O6 ? ? ? 1_555 A C 129 N4 ? ? A G 38 A C 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 41 N3 ? ? ? 1_555 A A 128 N1 ? ? A U 39 A A 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 41 O4 ? ? ? 1_555 A A 128 N6 ? ? A U 39 A A 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 42 N1 ? ? ? 1_555 A U 127 O2 ? ? A G 40 A U 125 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? A G 42 O6 ? ? ? 1_555 A U 127 N3 ? ? A G 40 A U 125 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? A C 43 N3 ? ? ? 1_555 A G 126 N1 ? ? A C 41 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 43 N4 ? ? ? 1_555 A G 126 O6 ? ? A C 41 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 43 O2 ? ? ? 1_555 A G 126 N2 ? ? A C 41 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 125 N1 ? ? A C 42 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 125 O6 ? ? A C 42 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 125 N2 ? ? A C 42 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 126 N1 ? ? A C 42 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 126 O6 ? ? A C 42 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 126 N2 ? ? A C 42 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 45 O2 ? ? ? 1_555 A G 125 N2 ? ? A U 43 A G 123 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog60 hydrog ? ? A U 46 O2 ? ? ? 1_555 A A 95 N6 ? ? A U 44 A A 93 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog61 hydrog ? ? A U 46 N3 ? ? ? 1_555 A U 121 O4 ? ? A U 44 A U 119 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog62 hydrog ? ? A G 48 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 46 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 48 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 46 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 48 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 46 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 47 A U 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 47 A U 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 48 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 48 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 48 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 51 N1 ? ? ? 1_555 A U 64 N3 ? ? A A 49 A U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 51 N6 ? ? ? 1_555 A U 64 O4 ? ? A A 49 A U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 50 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 50 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 50 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 53 N3 ? ? ? 1_555 A G 62 O6 ? ? A U 51 A G 60 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog76 hydrog ? ? A U 53 O2 ? ? ? 1_555 A G 62 N1 ? ? A U 51 A G 60 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog77 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 167 N1 ? ? A C 54 A G 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 167 O6 ? ? A C 54 A G 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 167 N2 ? ? A C 54 A G 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A U 57 N3 ? ? ? 1_555 A A 166 N1 ? ? A U 55 A A 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 57 O4 ? ? ? 1_555 A A 166 N6 ? ? A U 55 A A 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 165 N1 ? ? A C 56 A G 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 165 O6 ? ? A C 56 A G 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 165 N2 ? ? A C 56 A G 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A U 59 N3 ? ? ? 1_555 A A 164 N1 ? ? A U 57 A A 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A U 59 O4 ? ? ? 1_555 A A 164 N6 ? ? A U 57 A A 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A U 60 N3 ? ? ? 1_555 A A 164 N1 ? ? A U 58 A A 162 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog88 hydrog ? ? A G 75 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 73 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 75 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 73 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 75 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 73 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A A 76 N1 ? ? ? 1_555 A U 89 N3 ? ? A A 74 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A A 76 N6 ? ? ? 1_555 A U 89 O4 ? ? A A 74 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A A 77 N1 ? ? ? 1_555 A U 88 N3 ? ? A A 75 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A A 77 N6 ? ? ? 1_555 A U 88 O4 ? ? A A 75 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 78 N3 ? ? ? 1_555 A G 87 N1 ? ? A C 76 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 78 N4 ? ? ? 1_555 A G 87 O6 ? ? A C 76 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A C 78 O2 ? ? ? 1_555 A G 87 N2 ? ? A C 76 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A C 79 N3 ? ? ? 1_555 A G 86 N1 ? ? A C 77 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A C 79 N4 ? ? ? 1_555 A G 86 O6 ? ? A C 77 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A C 79 O2 ? ? ? 1_555 A G 86 N2 ? ? A C 77 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A C 80 N3 ? ? ? 1_555 A G 85 N1 ? ? A C 78 A G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 80 N4 ? ? ? 1_555 A G 85 O6 ? ? A C 78 A G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 80 O2 ? ? ? 1_555 A G 85 N2 ? ? A C 78 A G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A U 81 O2 ? ? ? 1_555 A G 85 N2 ? ? A U 79 A G 83 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog105 hydrog ? ? A G 93 N1 ? ? ? 1_555 A C 123 N3 ? ? A G 91 A C 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A G 93 N2 ? ? ? 1_555 A C 123 O2 ? ? A G 91 A C 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A G 93 O6 ? ? ? 1_555 A C 123 N4 ? ? A G 91 A C 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A C 94 N3 ? ? ? 1_555 A G 122 N1 ? ? A C 92 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A C 94 N4 ? ? ? 1_555 A G 122 O6 ? ? A C 92 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A C 94 O2 ? ? ? 1_555 A G 122 N2 ? ? A C 92 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A A 95 N1 ? ? ? 1_555 A U 121 N3 ? ? A A 93 A U 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A A 95 N6 ? ? ? 1_555 A U 121 O4 ? ? A A 93 A U 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A U 96 N3 ? ? ? 1_555 A A 120 N1 ? ? A U 94 A A 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A U 96 O4 ? ? ? 1_555 A A 120 N6 ? ? A U 94 A A 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A G 98 N1 ? ? ? 1_555 A C 114 N3 ? ? A G 96 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A G 98 N2 ? ? ? 1_555 A C 114 O2 ? ? A G 96 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A G 98 O6 ? ? ? 1_555 A C 114 N4 ? ? A G 96 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A G 99 N1 ? ? ? 1_555 A U 113 O2 ? ? A G 97 A U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog119 hydrog ? ? A G 99 O6 ? ? ? 1_555 A U 113 N3 ? ? A G 97 A U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog120 hydrog ? ? A C 100 N3 ? ? ? 1_555 A G 112 N1 ? ? A C 98 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? A C 100 N4 ? ? ? 1_555 A G 112 O6 ? ? A C 98 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? A C 100 O2 ? ? ? 1_555 A G 112 N2 ? ? A C 98 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A U 101 N3 ? ? ? 1_555 A A 111 N1 ? ? A U 99 A A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A U 101 O4 ? ? ? 1_555 A A 111 N6 ? ? A U 99 A A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? A U 102 N3 ? ? ? 1_555 A A 110 N1 ? ? A U 100 A A 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? A U 102 O4 ? ? ? 1_555 A A 110 N6 ? ? A U 100 A A 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? A G 103 N1 ? ? ? 1_555 A C 109 N3 ? ? A G 101 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? A G 103 N2 ? ? ? 1_555 A C 109 O2 ? ? A G 101 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? A G 103 O6 ? ? ? 1_555 A C 109 N4 ? ? A G 101 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? A C 104 O2 ? ? ? 1_555 A G 108 N1 ? ? A C 102 A G 106 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog131 hydrog ? ? A U 132 N3 ? ? ? 1_555 A A 153 N1 ? ? A U 130 A A 151 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? A U 132 O4 ? ? ? 1_555 A A 153 N6 ? ? A U 130 A A 151 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? A A 133 N1 ? ? ? 1_555 A U 152 N3 ? ? A A 131 A U 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? A A 133 N6 ? ? ? 1_555 A U 152 O4 ? ? A A 131 A U 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? A C 134 N3 ? ? ? 1_555 A G 151 N1 ? ? A C 132 A G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? A C 134 N4 ? ? ? 1_555 A G 151 O6 ? ? A C 132 A G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? A C 134 O2 ? ? ? 1_555 A G 151 N2 ? ? A C 132 A G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? A A 135 N1 ? ? ? 1_555 A U 150 N3 ? ? A A 133 A U 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? A A 135 N6 ? ? ? 1_555 A U 150 O4 ? ? A A 133 A U 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? A G 136 N1 ? ? ? 1_555 A C 149 N3 ? ? A G 134 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? A G 136 N2 ? ? ? 1_555 A C 149 O2 ? ? A G 134 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? A G 136 O6 ? ? ? 1_555 A C 149 N4 ? ? A G 134 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? A U 137 N3 ? ? ? 1_555 A A 148 N1 ? ? A U 135 A A 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? A U 137 O4 ? ? ? 1_555 A A 148 N6 ? ? A U 135 A A 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? A G 138 N1 ? ? ? 1_555 A C 147 N3 ? ? A G 136 A C 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? A G 138 N2 ? ? ? 1_555 A C 147 O2 ? ? A G 136 A C 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? A G 138 O6 ? ? ? 1_555 A C 147 N4 ? ? A G 136 A C 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? A U 139 N3 ? ? ? 1_555 A A 146 N1 ? ? A U 137 A A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? A U 139 O4 ? ? ? 1_555 A A 146 N6 ? ? A U 137 A A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? A U 140 N3 ? ? ? 1_555 A A 145 N1 ? ? A U 138 A A 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? A U 140 O4 ? ? ? 1_555 A A 145 N6 ? ? A U 138 A A 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? A G 141 N2 ? ? ? 1_555 A A 144 N7 ? ? A G 139 A A 142 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog153 hydrog ? ? A G 141 N3 ? ? ? 1_555 A A 144 N6 ? ? A G 139 A A 142 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.entry_id 7SAM _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7SAM _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 128226 _em_3d_reconstruction.resolution 4.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details 'Solution contained 10 mM magnesium chloride.' _em_buffer.pH 7.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'RNA was generated by in vitro transcription of sequence-verified linear DNA template' _em_entity_assembly.name ;tRNA-like structure at the 3' UTR of the brome mosaic virus (BMV) genome ; _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7SAM _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max -800 _em_imaging.nominal_defocus_min -2000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type C-flat-1.2/1.3 _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 278 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7SAM _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7SAM _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7SAM _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G -1 ? A G 1 2 1 Y 1 A G 0 ? A G 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_buffer_component.buffer_id 1 _em_buffer_component.id 1 _em_buffer_component.concentration 50 _em_buffer_component.concentration_units mM _em_buffer_component.formula ? _em_buffer_component.name NaMOPS # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.05456 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 12302 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Brome mosaic virus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 30 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'MODEL REFINEMENT' ? ? ? ? 1 ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? cryoSPARC ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details 'This sample was monodisperse as determined by native gel electrophoresis.' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7SAM 'double helix' 7SAM 'a-form double helix' 7SAM 'hairpin loop' 7SAM tetraloop 7SAM 'bulge loop' 7SAM 'mismatched base pair' 7SAM 'internal loop' 7SAM 'triple helix' 7SAM 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 28 1_555 A U 25 1_555 -6.522 -5.238 -0.757 -40.467 0.253 -23.629 1 A_A26:U23_A A 26 ? A 23 ? ? 6 1 A A 29 1_555 A U 24 1_555 0.151 -0.163 -0.569 -10.668 20.218 -2.833 2 A_A27:U22_A A 27 ? A 22 ? 20 1 1 A G 30 1_555 A C 23 1_555 -0.178 -0.175 -0.226 -0.603 17.978 -1.150 3 A_G28:C21_A A 28 ? A 21 ? 19 1 1 A A 31 1_555 A U 22 1_555 0.065 -0.120 -0.422 -0.199 -1.063 -0.001 4 A_A29:U20_A A 29 ? A 20 ? 20 1 1 A G 32 1_555 A C 21 1_555 -0.195 -0.123 -0.119 1.444 -4.531 0.653 5 A_G30:C19_A A 30 ? A 19 ? 19 1 1 A G 34 1_555 A C 20 1_555 -0.208 -0.159 -0.358 -2.761 9.952 1.131 6 A_G32:C18_A A 32 ? A 18 ? 19 1 1 A U 35 1_555 A A 19 1_555 -0.087 -0.135 -0.533 2.818 6.592 0.041 7 A_U33:A17_A A 33 ? A 17 ? 20 1 1 A C 36 1_555 A G 18 1_555 0.179 -0.179 -0.486 4.200 6.703 -0.890 8 A_C34:G16_A A 34 ? A 16 ? 19 1 1 A U 37 1_555 A A 17 1_555 -0.049 -0.049 0.141 -1.495 -3.938 1.183 9 A_U35:A15_A A 35 ? A 15 ? 20 1 1 A C 3 1_555 A G 15 1_555 0.174 -0.182 -0.644 -0.600 -2.384 1.694 10 A_C1:G13_A A 1 ? A 13 ? 19 1 1 A G 4 1_555 A C 14 1_555 -0.199 -0.162 -0.612 -6.471 -4.592 1.240 11 A_G2:C12_A A 2 ? A 12 ? 19 1 1 A U 5 1_555 A A 13 1_555 -0.119 -0.258 -0.998 -0.887 -1.368 -2.390 12 A_U3:A11_A A 3 ? A 11 ? 20 1 1 A G 6 1_555 A C 12 1_555 -0.181 -0.194 0.581 -5.583 -1.641 -0.081 13 A_G4:C10_A A 4 ? A 10 ? 19 1 1 A G 7 1_555 A U 156 1_555 0.079 -0.722 1.142 -37.120 -5.980 152.751 14 A_G5:U154_A A 5 ? A 154 ? 27 2 1 A G 125 1_555 A C 44 1_555 -0.104 -0.217 -1.243 -21.047 -2.774 -0.916 15 A_G123:C42_A A 123 ? A 42 ? 19 1 1 A G 126 1_555 A C 43 1_555 -0.107 -0.239 -0.973 -7.126 1.808 -2.711 16 A_G124:C41_A A 124 ? A 41 ? 19 1 1 A U 127 1_555 A G 42 1_555 2.240 -0.403 -0.732 4.356 -0.167 -0.758 17 A_U125:G40_A A 125 ? A 40 ? 28 1 1 A A 128 1_555 A U 41 1_555 -0.009 -0.101 0.038 -2.809 2.052 1.829 18 A_A126:U39_A A 126 ? A 39 ? 20 1 1 A C 129 1_555 A G 40 1_555 0.157 -0.177 -0.586 5.879 2.262 -1.283 19 A_C127:G38_A A 127 ? A 38 ? 19 1 1 A C 130 1_555 A G 39 1_555 0.191 -0.156 -0.598 6.235 -6.319 0.454 20 A_C128:G37_A A 128 ? A 37 ? 19 1 1 A U 132 1_555 A A 153 1_555 -0.073 -0.040 -0.127 -15.589 4.695 -1.797 21 A_U130:A151_A A 130 ? A 151 ? 20 1 1 A A 133 1_555 A U 152 1_555 0.044 -0.126 -0.208 -2.463 10.757 -0.087 22 A_A131:U150_A A 131 ? A 150 ? 20 1 1 A C 134 1_555 A G 151 1_555 0.233 -0.146 0.314 8.626 9.656 2.560 23 A_C132:G149_A A 132 ? A 149 ? 19 1 1 A A 135 1_555 A U 150 1_555 0.003 -0.073 -0.128 -4.446 -6.398 0.799 24 A_A133:U148_A A 133 ? A 148 ? 20 1 1 A G 136 1_555 A C 149 1_555 -0.159 -0.235 -0.914 -4.587 0.017 -0.042 25 A_G134:C147_A A 134 ? A 147 ? 19 1 1 A U 137 1_555 A A 148 1_555 -0.080 -0.132 -0.506 0.774 1.364 -0.164 26 A_U135:A146_A A 135 ? A 146 ? 20 1 1 A G 138 1_555 A C 147 1_555 -0.189 -0.147 -0.536 -6.827 -4.946 0.683 27 A_G136:C145_A A 136 ? A 145 ? 19 1 1 A U 139 1_555 A A 146 1_555 -0.044 -0.185 -0.711 -4.512 -2.253 0.461 28 A_U137:A144_A A 137 ? A 144 ? 20 1 1 A U 140 1_555 A A 145 1_555 0.001 -0.125 0.245 2.428 2.404 4.166 29 A_U138:A143_A A 138 ? A 143 ? 20 1 1 A G 141 1_555 A A 144 1_555 6.708 -4.716 0.028 10.839 3.602 -2.606 30 A_G139:A142_A A 139 ? A 142 ? 11 6 1 A G 48 1_555 A C 67 1_555 -0.042 -0.258 -1.207 -18.120 7.753 -3.920 31 A_G46:C65_A A 46 ? A 65 ? 19 1 1 A A 49 1_555 A U 66 1_555 0.208 -0.139 -0.600 -8.090 21.387 -4.181 32 A_A47:U64_A A 47 ? A 64 ? 20 1 1 A G 50 1_555 A C 65 1_555 -0.132 -0.166 -0.817 -11.043 0.907 0.053 33 A_G48:C63_A A 48 ? A 63 ? 19 1 1 A A 51 1_555 A U 64 1_555 0.076 -0.079 -0.202 -5.735 4.176 2.520 34 A_A49:U62_A A 49 ? A 62 ? 20 1 1 A G 52 1_555 A C 63 1_555 -0.191 -0.225 0.656 -4.320 -0.738 1.484 35 A_G50:C61_A A 50 ? A 61 ? 19 1 1 A U 53 1_555 A G 62 1_555 2.508 -0.826 1.352 0.468 0.535 4.005 36 A_U51:G60_A A 51 ? A 60 ? 28 1 1 A C 56 1_555 A G 167 1_555 0.192 -0.156 -0.195 0.127 -1.594 1.078 37 A_C54:G165_A A 54 ? A 165 ? 19 1 1 A U 57 1_555 A A 166 1_555 -0.036 -0.102 0.110 -0.581 10.916 0.862 38 A_U55:A164_A A 55 ? A 164 ? 20 1 1 A C 58 1_555 A G 165 1_555 0.139 -0.177 -0.274 6.658 11.215 -2.047 39 A_C56:G163_A A 56 ? A 163 ? 19 1 1 A U 59 1_555 A A 164 1_555 -0.411 -0.159 -1.153 18.543 13.211 -9.423 40 A_U57:A162_A A 57 ? A 162 ? 20 1 1 A G 75 1_555 A C 90 1_555 -0.214 -0.183 -0.641 -6.859 -6.493 1.217 41 A_G73:C88_A A 73 ? A 88 ? 19 1 1 A A 76 1_555 A U 89 1_555 0.089 -0.156 -0.869 -6.476 -4.120 0.072 42 A_A74:U87_A A 74 ? A 87 ? 20 1 1 A A 77 1_555 A U 88 1_555 0.082 -0.119 -0.427 -2.757 4.208 -0.596 43 A_A75:U86_A A 75 ? A 86 ? 20 1 1 A C 78 1_555 A G 87 1_555 0.220 -0.124 -0.036 2.757 2.716 1.597 44 A_C76:G85_A A 76 ? A 85 ? 19 1 1 A C 79 1_555 A G 86 1_555 0.145 -0.164 -0.637 7.807 5.640 -1.053 45 A_C77:G84_A A 77 ? A 84 ? 19 1 1 A C 80 1_555 A G 85 1_555 0.059 -0.247 -1.252 17.806 4.581 -2.435 46 A_C78:G83_A A 78 ? A 83 ? 19 1 1 A G 93 1_555 A C 123 1_555 -0.186 -0.131 0.003 2.279 3.076 1.528 47 A_G91:C121_A A 91 ? A 121 ? 19 1 1 A C 94 1_555 A G 122 1_555 0.196 -0.139 -0.002 2.358 -0.459 -0.707 48 A_C92:G120_A A 92 ? A 120 ? 19 1 1 A A 95 1_555 A U 121 1_555 0.050 -0.087 0.316 2.804 -2.765 1.651 49 A_A93:U119_A A 93 ? A 119 ? 20 1 1 A U 96 1_555 A A 120 1_555 -0.045 -0.084 -0.220 7.039 -4.912 0.392 50 A_U94:A118_A A 94 ? A 118 ? 20 1 1 A G 98 1_555 A C 114 1_555 -0.198 -0.186 0.307 -9.903 -2.889 -1.163 51 A_G96:C112_A A 96 ? A 112 ? 19 1 1 A G 99 1_555 A U 113 1_555 -3.645 -1.271 -0.874 -12.843 1.508 -8.111 52 A_G97:U111_A A 97 ? A 111 ? 28 1 1 A C 100 1_555 A G 112 1_555 0.193 -0.295 -0.759 -8.849 14.076 -4.750 53 A_C98:G110_A A 98 ? A 110 ? 19 1 1 A U 101 1_555 A A 111 1_555 -0.035 -0.080 -0.014 -4.006 16.232 0.467 54 A_U99:A109_A A 99 ? A 109 ? 20 1 1 A U 102 1_555 A A 110 1_555 0.001 -0.155 -0.439 -0.344 -1.901 2.667 55 A_U100:A108_A A 100 ? A 108 ? 20 1 1 A G 103 1_555 A C 109 1_555 -0.218 -0.128 0.167 3.236 19.676 2.620 56 A_G101:C107_A A 101 ? A 107 ? 19 1 1 A C 104 1_555 A G 108 1_555 1.461 -4.660 -0.183 25.405 -8.237 -97.007 57 A_C102:G106_A A 102 ? A 106 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 28 1_555 A U 25 1_555 A A 29 1_555 A U 24 1_555 0.680 -0.826 2.477 -6.516 5.476 62.348 -0.973 -0.867 2.330 5.264 6.263 62.868 1 AA_A26A27:U22U23_AA A 26 ? A 23 ? A 27 ? A 22 ? 1 A A 29 1_555 A U 24 1_555 A G 30 1_555 A C 23 1_555 -0.020 -1.860 3.107 -1.512 11.275 27.205 -5.688 -0.233 2.177 22.750 3.052 29.447 2 AA_A27G28:C21U22_AA A 27 ? A 22 ? A 28 ? A 21 ? 1 A G 30 1_555 A C 23 1_555 A A 31 1_555 A U 22 1_555 0.477 -1.626 3.370 3.117 11.797 33.993 -4.230 -0.347 2.707 19.418 -5.131 36.055 3 AA_G28A29:U20C21_AA A 28 ? A 21 ? A 29 ? A 20 ? 1 A A 31 1_555 A U 22 1_555 A G 32 1_555 A C 21 1_555 0.129 -1.707 3.310 -0.448 2.331 31.765 -3.533 -0.315 3.178 4.251 0.817 31.852 4 AA_A29G30:C19U20_AA A 29 ? A 20 ? A 30 ? A 19 ? 1 A G 32 1_555 A C 21 1_555 A G 34 1_555 A C 20 1_555 -2.132 -1.743 2.865 -5.557 11.102 48.845 -2.731 2.167 2.647 13.180 6.597 50.304 5 AA_G30G32:C18C19_AA A 30 ? A 19 ? A 32 ? A 18 ? 1 A G 34 1_555 A C 20 1_555 A U 35 1_555 A A 19 1_555 -0.534 -2.002 3.204 2.242 2.651 31.815 -4.086 1.354 2.988 4.817 -4.076 31.999 6 AA_G32U33:A17C18_AA A 32 ? A 18 ? A 33 ? A 17 ? 1 A U 35 1_555 A A 19 1_555 A C 36 1_555 A G 18 1_555 -0.029 -1.848 3.187 1.847 8.458 31.684 -4.583 0.338 2.614 15.141 -3.306 32.816 7 AA_U33C34:G16A17_AA A 33 ? A 17 ? A 34 ? A 16 ? 1 A C 36 1_555 A G 18 1_555 A U 37 1_555 A A 17 1_555 0.790 -2.092 3.560 2.798 5.110 31.367 -4.782 -0.904 3.244 9.350 -5.121 31.890 8 AA_C34U35:A15G16_AA A 34 ? A 16 ? A 35 ? A 15 ? 1 A U 37 1_555 A A 17 1_555 A C 3 1_555 A G 15 1_555 -1.604 -1.731 5.015 4.621 26.715 79.482 -2.257 1.373 4.290 20.361 -3.522 83.248 9 AA_U35C1:G13A15_AA A 35 ? A 15 ? A 1 ? A 13 ? 1 A C 3 1_555 A G 15 1_555 A G 4 1_555 A C 14 1_555 -0.484 -1.708 3.587 -1.399 9.091 28.461 -5.241 0.643 2.933 17.910 2.757 29.881 10 AA_C1G2:C12G13_AA A 1 ? A 13 ? A 2 ? A 12 ? 1 A G 4 1_555 A C 14 1_555 A U 5 1_555 A A 13 1_555 -0.685 -1.428 3.260 -0.973 1.848 35.922 -2.572 0.971 3.202 2.994 1.576 35.980 11 AA_G2U3:A11C12_AA A 2 ? A 12 ? A 3 ? A 11 ? 1 A U 5 1_555 A A 13 1_555 A G 6 1_555 A C 12 1_555 -0.168 -1.904 3.321 -10.759 21.100 30.775 -5.115 -0.888 1.694 34.135 17.405 38.659 12 AA_U3G4:C10A11_AA A 3 ? A 11 ? A 4 ? A 10 ? 1 A G 6 1_555 A C 12 1_555 A G 7 1_555 A U 156 1_555 2.260 1.956 3.346 15.709 -1.118 -28.145 -3.357 6.500 1.922 2.103 29.557 -32.173 13 AA_G4G5:U154C10_AA A 4 ? A 10 ? A 5 ? A 154 ? 1 A G 125 1_555 A C 44 1_555 A G 126 1_555 A C 43 1_555 0.028 -1.021 3.073 -3.605 3.978 29.031 -2.782 -0.760 2.886 7.850 7.115 29.513 14 AA_G123G124:C41C42_AA A 123 ? A 42 ? A 124 ? A 41 ? 1 A G 126 1_555 A C 43 1_555 A U 127 1_555 A G 42 1_555 0.875 -1.181 2.981 -0.245 2.572 41.935 -1.887 -1.243 2.902 3.589 0.341 42.011 15 AA_G124U125:G40C41_AA A 124 ? A 41 ? A 125 ? A 40 ? 1 A U 127 1_555 A G 42 1_555 A A 128 1_555 A U 41 1_555 -0.289 -1.893 3.213 -0.099 20.791 26.477 -5.990 0.488 1.398 38.698 0.184 33.550 16 AA_U125A126:U39G40_AA A 125 ? A 40 ? A 126 ? A 39 ? 1 A A 128 1_555 A U 41 1_555 A C 129 1_555 A G 40 1_555 -0.333 -1.406 3.194 3.242 3.783 27.671 -3.733 1.403 2.922 7.830 -6.709 28.107 17 AA_A126C127:G38U39_AA A 126 ? A 39 ? A 127 ? A 38 ? 1 A C 129 1_555 A G 40 1_555 A C 130 1_555 A G 39 1_555 0.634 -1.623 3.156 2.048 5.082 33.970 -3.485 -0.773 2.922 8.629 -3.477 34.396 18 AA_C127C128:G37G38_AA A 127 ? A 38 ? A 128 ? A 37 ? 1 A C 130 1_555 A G 39 1_555 A U 132 1_555 A A 153 1_555 1.414 -2.739 6.397 5.781 21.012 76.882 -3.214 -0.812 5.698 16.588 -4.564 79.449 19 AA_C128U130:A151G37_AA A 128 ? A 37 ? A 130 ? A 151 ? 1 A U 132 1_555 A A 153 1_555 A A 133 1_555 A U 152 1_555 -0.019 -0.988 3.293 -3.477 7.781 30.361 -3.228 -0.595 2.940 14.502 6.479 31.508 20 AA_U130A131:U150A151_AA A 130 ? A 151 ? A 131 ? A 150 ? 1 A A 133 1_555 A U 152 1_555 A C 134 1_555 A G 151 1_555 0.836 -1.391 3.158 -2.145 7.703 29.710 -3.989 -1.957 2.657 14.690 4.092 30.744 21 AA_A131C132:G149U150_AA A 131 ? A 150 ? A 132 ? A 149 ? 1 A C 134 1_555 A G 151 1_555 A A 135 1_555 A U 150 1_555 0.229 -1.832 3.009 7.158 34.799 36.583 -3.953 0.104 1.025 44.654 -9.186 50.568 22 AA_C132A133:U148G149_AA A 132 ? A 149 ? A 133 ? A 148 ? 1 A A 135 1_555 A U 150 1_555 A G 136 1_555 A C 149 1_555 -0.205 -1.829 3.451 0.538 2.023 27.887 -4.281 0.557 3.309 4.190 -1.115 27.964 23 AA_A133G134:C147U148_AA A 133 ? A 148 ? A 134 ? A 147 ? 1 A G 136 1_555 A C 149 1_555 A U 137 1_555 A A 148 1_555 -0.429 -1.630 3.314 -1.891 2.586 31.902 -3.416 0.438 3.194 4.691 3.430 32.059 24 AA_G134U135:A146C147_AA A 134 ? A 147 ? A 135 ? A 146 ? 1 A U 137 1_555 A A 148 1_555 A G 138 1_555 A C 147 1_555 0.495 -1.233 3.348 0.148 30.578 32.503 -4.188 -0.644 1.658 44.328 -0.214 44.341 25 AA_U135G136:C145A146_AA A 135 ? A 146 ? A 136 ? A 145 ? 1 A G 138 1_555 A C 147 1_555 A U 139 1_555 A A 146 1_555 -0.003 -1.387 3.569 -0.845 0.999 29.922 -2.908 -0.184 3.520 1.933 1.635 29.950 26 AA_G136U137:A144C145_AA A 136 ? A 145 ? A 137 ? A 144 ? 1 A U 139 1_555 A A 146 1_555 A U 140 1_555 A A 145 1_555 0.729 -1.511 3.494 -6.570 -2.160 29.957 -2.402 -2.744 3.359 -4.110 12.500 30.727 27 AA_U137U138:A143A144_AA A 137 ? A 144 ? A 138 ? A 143 ? 1 A U 140 1_555 A A 145 1_555 A G 141 1_555 A A 144 1_555 0.243 -1.551 3.022 0.799 3.824 52.207 -1.987 -0.227 2.912 4.339 -0.906 52.343 28 AA_U138G139:A142A143_AA A 138 ? A 143 ? A 139 ? A 142 ? 1 A G 48 1_555 A C 67 1_555 A A 49 1_555 A U 66 1_555 0.334 -1.452 3.288 -6.159 7.682 36.957 -3.144 -1.252 2.851 11.862 9.510 38.202 29 AA_G46A47:U64C65_AA A 46 ? A 65 ? A 47 ? A 64 ? 1 A A 49 1_555 A U 66 1_555 A G 50 1_555 A C 65 1_555 0.646 -1.837 3.297 2.286 27.338 29.984 -5.166 -0.726 1.291 43.186 -3.612 40.427 30 AA_A47G48:C63U64_AA A 47 ? A 64 ? A 48 ? A 63 ? 1 A G 50 1_555 A C 65 1_555 A A 51 1_555 A U 64 1_555 0.827 -1.378 3.682 -2.714 4.443 34.568 -3.027 -1.825 3.411 7.425 4.535 34.946 31 AA_G48A49:U62C63_AA A 48 ? A 63 ? A 49 ? A 62 ? 1 A A 51 1_555 A U 64 1_555 A G 52 1_555 A C 63 1_555 0.287 -1.843 3.423 -2.801 5.791 27.176 -5.178 -1.253 2.931 12.110 5.856 27.913 32 AA_A49G50:C61U62_AA A 49 ? A 62 ? A 50 ? A 61 ? 1 A G 52 1_555 A C 63 1_555 A U 53 1_555 A G 62 1_555 0.859 -1.603 3.186 -3.138 0.321 44.437 -2.143 -1.411 3.110 0.424 4.143 44.543 33 AA_G50U51:G60C61_AA A 50 ? A 61 ? A 51 ? A 60 ? 1 A C 56 1_555 A G 167 1_555 A U 57 1_555 A A 166 1_555 -0.274 -1.734 3.120 -1.970 11.585 36.230 -3.957 0.200 2.481 18.055 3.071 38.028 34 AA_C54U55:A164G165_AA A 54 ? A 165 ? A 55 ? A 164 ? 1 A U 57 1_555 A A 166 1_555 A C 58 1_555 A G 165 1_555 -0.166 -1.914 2.990 3.848 4.281 32.663 -3.984 0.857 2.688 7.539 -6.777 33.152 35 AA_U55C56:G163A164_AA A 55 ? A 164 ? A 56 ? A 163 ? 1 A C 58 1_555 A G 165 1_555 A U 59 1_555 A A 164 1_555 -0.953 -1.660 2.961 5.777 4.138 30.372 -3.755 2.703 2.499 7.766 -10.840 31.173 36 AA_C56U57:A162G163_AA A 56 ? A 163 ? A 57 ? A 162 ? 1 A G 75 1_555 A C 90 1_555 A A 76 1_555 A U 89 1_555 -0.235 -1.334 3.453 -0.587 1.639 31.434 -2.778 0.319 3.384 3.022 1.083 31.481 37 AA_G73A74:U87C88_AA A 73 ? A 88 ? A 74 ? A 87 ? 1 A A 76 1_555 A U 89 1_555 A A 77 1_555 A U 88 1_555 -0.341 -1.416 3.200 -3.100 7.840 31.868 -3.745 0.109 2.802 13.975 5.526 32.936 38 AA_A74A75:U86U87_AA A 74 ? A 87 ? A 75 ? A 86 ? 1 A A 77 1_555 A U 88 1_555 A C 78 1_555 A G 87 1_555 1.016 -1.634 3.130 -1.427 4.283 33.387 -3.461 -1.967 2.859 7.412 2.469 33.682 39 AA_A75C76:G85U86_AA A 75 ? A 86 ? A 76 ? A 85 ? 1 A C 78 1_555 A G 87 1_555 A C 79 1_555 A G 86 1_555 -0.202 -1.955 2.868 5.796 11.860 33.030 -4.550 0.989 2.007 19.899 -9.724 35.501 40 AA_C76C77:G84G85_AA A 76 ? A 85 ? A 77 ? A 84 ? 1 A C 79 1_555 A G 86 1_555 A C 80 1_555 A G 85 1_555 -0.042 -1.678 3.056 4.123 2.479 27.206 -4.064 1.001 2.858 5.218 -8.678 27.621 41 AA_C77C78:G83G84_AA A 77 ? A 84 ? A 78 ? A 83 ? 1 A G 93 1_555 A C 123 1_555 A C 94 1_555 A G 122 1_555 -0.450 -1.406 3.222 -1.312 0.771 37.073 -2.310 0.534 3.207 1.212 2.062 37.104 42 AA_G91C92:G120C121_AA A 91 ? A 121 ? A 92 ? A 120 ? 1 A C 94 1_555 A G 122 1_555 A A 95 1_555 A U 121 1_555 0.285 -1.849 2.842 -2.593 15.254 31.028 -4.855 -0.776 1.741 26.546 4.513 34.587 43 AA_C92A93:U119G120_AA A 92 ? A 120 ? A 93 ? A 119 ? 1 A A 95 1_555 A U 121 1_555 A U 96 1_555 A A 120 1_555 -0.287 -1.825 3.127 2.096 0.424 33.185 -3.257 0.833 3.081 0.741 -3.666 33.252 44 AA_A93U94:A118U119_AA A 93 ? A 119 ? A 94 ? A 118 ? 1 A G 98 1_555 A C 114 1_555 A G 99 1_555 A U 113 1_555 -0.473 -0.589 4.423 -2.073 1.525 13.692 -4.417 -0.751 4.354 6.324 8.597 13.930 45 AA_G96G97:U111C112_AA A 96 ? A 112 ? A 97 ? A 111 ? 1 A G 99 1_555 A U 113 1_555 A C 100 1_555 A G 112 1_555 -0.116 -0.927 3.731 -5.406 4.620 42.942 -1.755 -0.433 3.605 6.259 7.325 43.500 46 AA_G97C98:G110U111_AA A 97 ? A 111 ? A 98 ? A 110 ? 1 A C 100 1_555 A G 112 1_555 A U 101 1_555 A A 111 1_555 0.868 -1.822 3.464 -0.411 12.838 30.410 -5.290 -1.597 2.499 23.216 0.743 32.953 47 AA_C98U99:A109G110_AA A 98 ? A 110 ? A 99 ? A 109 ? 1 A U 101 1_555 A A 111 1_555 A U 102 1_555 A A 110 1_555 0.506 -1.421 3.326 1.540 21.328 29.272 -4.982 -0.621 1.912 36.673 -2.647 36.112 48 AA_U99U100:A108A109_AA A 99 ? A 109 ? A 100 ? A 108 ? 1 A U 102 1_555 A A 110 1_555 A G 103 1_555 A C 109 1_555 0.528 -1.502 3.230 -4.547 16.456 31.469 -4.529 -1.436 2.117 27.918 7.714 35.699 49 AA_U100G101:C107A108_AA A 100 ? A 108 ? A 101 ? A 107 ? 1 A G 103 1_555 A C 109 1_555 A C 104 1_555 A G 108 1_555 1.284 -2.247 3.036 5.508 4.817 105.721 -1.468 -0.736 3.008 3.019 -3.452 105.898 50 AA_G101C102:G106C107_AA A 101 ? A 107 ? A 102 ? A 106 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM118070 1 'National Science Foundation (NSF, United States)' 'United States' F32GM139385 2 'Howard Hughes Medical Institute (HHMI)' 'United States' 'Hanna H. Gray Fellowship' 3 # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 7SAM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ #