HEADER DNA 29-SEP-21 7SE3 TITLE [IU:HG2+:U] METAL-MEDIATED DNA BASE PAIR IN A SELF-ASSEMBLING TITLE 2 RHOMBOHEDRAL LATTICE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*(5IU) COMPND 3 P*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*GP*CP*T)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'); COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SELF-ASSEMBLING CRYSTAL, METAL-MEDIATED KEYWDS 2 MISMATCH, DNA EXPDTA X-RAY DIFFRACTION AUTHOR B.LU,S.VECCHIONI,N.C.SEEMAN,R.SHA,Y.P.OHAYON REVDAT 3 22-MAY-24 7SE3 1 REMARK REVDAT 2 19-APR-23 7SE3 1 JRNL REVDAT 1 05-OCT-22 7SE3 0 JRNL AUTH S.VECCHIONI,B.LU,W.LIVERNOIS,Y.P.OHAYON,J.B.YODER,C.F.YANG, JRNL AUTH 2 K.WOLOSZYN,W.BERNFELD,M.P.ANANTRAM,J.W.CANARY, JRNL AUTH 3 W.A.HENDRICKSON,L.J.ROTHSCHILD,C.MAO,S.J.WIND,N.C.SEEMAN, JRNL AUTH 4 R.SHA JRNL TITL METAL-MEDIATED DNA NANOTECHNOLOGY IN 3D: STRUCTURAL LIBRARY JRNL TITL 2 BY TEMPLATED DIFFRACTION. JRNL REF ADV MATER 01938 2023 JRNL REFN ISSN 1521-4095 JRNL PMID 36939292 JRNL DOI 10.1002/ADMA.202201938 REMARK 2 REMARK 2 RESOLUTION. 3.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 63.9 REMARK 3 NUMBER OF REFLECTIONS : 2596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.620 REMARK 3 FREE R VALUE TEST SET COUNT : 120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8200 - 3.7600 0.64 2476 120 0.1828 0.1865 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.428 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.568 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 265.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 271.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 957 REMARK 3 ANGLE : 0.991 1469 REMARK 3 CHIRALITY : 0.049 162 REMARK 3 PLANARITY : 0.004 42 REMARK 3 DIHEDRAL : 36.572 417 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.087 -3.093 23.634 REMARK 3 T TENSOR REMARK 3 T11: 3.6870 T22: 2.3694 REMARK 3 T33: 2.3224 T12: 0.2523 REMARK 3 T13: 0.0719 T23: 0.8811 REMARK 3 L TENSOR REMARK 3 L11: 2.6268 L22: 4.7744 REMARK 3 L33: 0.3081 L12: -0.4740 REMARK 3 L13: -1.5552 L23: -3.8077 REMARK 3 S TENSOR REMARK 3 S11: -0.3176 S12: 0.3718 S13: -0.7642 REMARK 3 S21: 1.2106 S22: 2.2783 S23: 2.9566 REMARK 3 S31: -0.6435 S32: -1.0926 S33: -1.6174 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.418 -0.247 22.074 REMARK 3 T TENSOR REMARK 3 T11: 1.9944 T22: 2.8343 REMARK 3 T33: 1.7713 T12: -0.0515 REMARK 3 T13: -0.2296 T23: 0.7208 REMARK 3 L TENSOR REMARK 3 L11: 7.0402 L22: 8.7597 REMARK 3 L33: 2.3319 L12: 5.3551 REMARK 3 L13: 1.3397 L23: 0.7486 REMARK 3 S TENSOR REMARK 3 S11: 0.4637 S12: 5.4634 S13: 0.5709 REMARK 3 S21: -0.6734 S22: 1.8078 S23: 2.0894 REMARK 3 S31: 0.9562 S32: -1.9847 S33: -2.3403 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND RESID 8:14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.048 -20.531 35.539 REMARK 3 T TENSOR REMARK 3 T11: 2.6952 T22: 1.6698 REMARK 3 T33: 3.1043 T12: 0.0925 REMARK 3 T13: 0.1662 T23: 0.7552 REMARK 3 L TENSOR REMARK 3 L11: 7.5929 L22: 4.8047 REMARK 3 L33: 6.5424 L12: 5.9932 REMARK 3 L13: -4.0633 L23: -3.8977 REMARK 3 S TENSOR REMARK 3 S11: -1.6607 S12: 0.1140 S13: 2.0290 REMARK 3 S21: 0.5161 S22: 4.1640 S23: 3.6107 REMARK 3 S31: 0.4146 S32: -0.7622 S33: -2.2429 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.645 19.801 8.390 REMARK 3 T TENSOR REMARK 3 T11: 3.8659 T22: 1.6724 REMARK 3 T33: 2.7611 T12: -0.3752 REMARK 3 T13: 1.2652 T23: 1.3373 REMARK 3 L TENSOR REMARK 3 L11: 1.9604 L22: 1.2419 REMARK 3 L33: 2.0770 L12: -4.2637 REMARK 3 L13: 1.9227 L23: 1.3767 REMARK 3 S TENSOR REMARK 3 S11: -4.3896 S12: 7.9473 S13: -1.5669 REMARK 3 S21: -3.7305 S22: 0.1598 S23: -0.4133 REMARK 3 S31: -0.4662 S32: -5.5319 S33: -0.6128 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000259396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00743 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2846 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.719 REMARK 200 RESOLUTION RANGE LOW (A) : 65.638 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOPS, MAGNESIUM SULFATE, MERCURY REMARK 280 CHLORIDE, PH 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.45950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.86486 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.02000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 53.45950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.86486 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.02000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 53.45950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.86486 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.02000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.72971 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 62.04000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.72971 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 62.04000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.72971 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 62.04000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DU B 4 C5' DU B 4 C4' -0.087 REMARK 500 DU B 4 C4' DU B 4 C3' 0.065 REMARK 500 DU B 4 C3' DU B 4 C2' -0.292 REMARK 500 DU B 4 C2' DU B 4 C1' 0.114 REMARK 500 DU B 4 O4' DU B 4 C1' -0.111 REMARK 500 DU B 4 O3' DU B 4 C3' 0.088 REMARK 500 DU B 4 N1 DU B 4 C2 0.102 REMARK 500 DU B 4 N1 DU B 4 C6 0.072 REMARK 500 DU B 4 C2 DU B 4 N3 0.113 REMARK 500 DU B 4 N3 DU B 4 C4 0.073 REMARK 500 DU B 4 C4 DU B 4 C5 0.060 REMARK 500 DU B 4 C5 DU B 4 C6 0.154 REMARK 500 DC D 1 P DC D 1 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT A 11 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DU B 4 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DU B 4 C1' - O4' - C4' ANGL. DEV. = -7.8 DEGREES REMARK 500 DU B 4 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DU B 4 N1 - C2 - N3 ANGL. DEV. = 5.5 DEGREES REMARK 500 DU B 4 C2 - N3 - C4 ANGL. DEV. = -7.0 DEGREES REMARK 500 DU B 4 N3 - C4 - C5 ANGL. DEV. = 4.9 DEGREES REMARK 500 DU B 4 C5 - C4 - O4 ANGL. DEV. = -5.9 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 101 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5IU A 12 N3 REMARK 620 2 5IU A 12 O4 68.2 REMARK 620 3 DU B 4 N3 175.2 115.9 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SD6 RELATED DB: PDB REMARK 900 CONTAINS A DIFFERENT BASE PAIR IN THE SAME MOTIF. DBREF 7SE3 A 1 21 PDB 7SE3 7SE3 1 21 DBREF 7SE3 B 1 7 PDB 7SE3 7SE3 1 7 DBREF 7SE3 C 8 14 PDB 7SE3 7SE3 8 14 DBREF 7SE3 D 1 7 PDB 7SE3 7SE3 1 7 SEQRES 1 A 21 DG DA DG DC DA DG DC DC DT DG DT 5IU DT SEQRES 2 A 21 DG DG DA DC DA DT DC DA SEQRES 1 B 7 DC DC DA DU DA DC DA SEQRES 1 C 7 DG DG DC DT DG DC DT SEQRES 1 D 7 DC DT DG DA DT DG DT HET 5IU A 12 20 HET HG B 101 1 HETNAM 5IU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM HG MERCURY (II) ION FORMUL 1 5IU C9 H12 I N2 O8 P FORMUL 5 HG HG 2+ LINK O3' DT A 11 P 5IU A 12 1555 1555 1.62 LINK O3' 5IU A 12 P DT A 13 1555 1555 1.61 LINK N3 5IU A 12 HG HG B 101 1555 1555 2.11 LINK O4 5IU A 12 HG HG B 101 1555 1555 2.12 LINK N3 DU B 4 HG HG B 101 1555 1555 2.10 CRYST1 106.919 106.919 93.060 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009353 0.005400 0.000000 0.00000 SCALE2 0.000000 0.010800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010746 0.00000