HEADER HYDROLASE 14-OCT-21 7SIQ TITLE CRYSTAL STRUCTURE OF A PEPTIDE CHAIN RELEASE FACTOR 3 (PRFC) FROM TITLE 2 STENOTROPHOMONAS MALTOPHILIA BOUND TO GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE CHAIN RELEASE FACTOR 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RF-3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA (STRAIN K279A); SOURCE 3 ORGANISM_TAXID: 522373; SOURCE 4 STRAIN: K279A; SOURCE 5 GENE: PRFC, SMLT3637; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NIAID, STRUCTURAL GENOMICS, ELONGATION FACTOR G, EF-G, GTPASE, GTP- KEYWDS 2 DEPENDENT, GDP-DEPENDENT, AEROBIC, NONFERMENTATIVE, GRAM-NEGATIVE KEYWDS 3 BACTERIUM, RIBOSOME, PEPTIDE RELEASE, RECYCLING, SEATTLE STRUCTURAL KEYWDS 4 GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7SIQ 1 REMARK REVDAT 1 27-OCT-21 7SIQ 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH,P.S.HORANYI,D.D.LORIMER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF A PEPTIDE CHAIN RELEASE FACTOR 3 (PRFC) JRNL TITL 2 FROM STENOTROPHOMONAS MALTOPHILIA BOUND TO GDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV-4274 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 19688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2700 - 5.6400 1.00 2847 152 0.1951 0.2485 REMARK 3 2 5.6400 - 4.4800 1.00 2725 150 0.1941 0.2184 REMARK 3 3 4.4800 - 3.9100 1.00 2694 123 0.2139 0.3496 REMARK 3 4 3.9100 - 3.5600 0.99 2616 151 0.2512 0.2849 REMARK 3 5 3.5500 - 3.3000 0.99 2669 129 0.2709 0.3302 REMARK 3 6 3.3000 - 3.1100 0.97 2583 123 0.3032 0.3608 REMARK 3 7 3.1100 - 2.9500 0.97 2609 117 0.3572 0.4794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.9641 -17.3423 9.2198 REMARK 3 T TENSOR REMARK 3 T11: 0.6464 T22: 1.0214 REMARK 3 T33: 0.5199 T12: 0.2603 REMARK 3 T13: -0.0065 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.7796 L22: 4.0214 REMARK 3 L33: 4.2097 L12: 1.0202 REMARK 3 L13: 0.9920 L23: 0.5539 REMARK 3 S TENSOR REMARK 3 S11: 0.1476 S12: -0.0034 S13: 0.1603 REMARK 3 S21: -0.0922 S22: -0.1037 S23: 0.0583 REMARK 3 S31: 0.5247 S32: 0.0728 S33: -0.0307 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.0312 6.6606 6.7681 REMARK 3 T TENSOR REMARK 3 T11: 0.7997 T22: 1.0028 REMARK 3 T33: 0.5822 T12: 0.1593 REMARK 3 T13: 0.0202 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 1.6013 L22: 5.9210 REMARK 3 L33: 3.6655 L12: 1.1913 REMARK 3 L13: 0.0885 L23: -1.0936 REMARK 3 S TENSOR REMARK 3 S11: -0.1312 S12: 0.1301 S13: 0.4212 REMARK 3 S21: -0.3021 S22: -0.1504 S23: 0.1455 REMARK 3 S31: -0.8903 S32: 0.3542 S33: 0.2176 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7261 -4.4187 4.4863 REMARK 3 T TENSOR REMARK 3 T11: 0.8002 T22: 1.0394 REMARK 3 T33: 0.6772 T12: 0.3164 REMARK 3 T13: 0.1241 T23: 0.1317 REMARK 3 L TENSOR REMARK 3 L11: 4.3719 L22: 4.9583 REMARK 3 L33: 2.4333 L12: 0.0099 REMARK 3 L13: -0.3881 L23: 0.4865 REMARK 3 S TENSOR REMARK 3 S11: 0.1619 S12: 1.1182 S13: -0.3695 REMARK 3 S21: -0.5456 S22: -0.2259 S23: -0.1005 REMARK 3 S31: -0.6726 S32: 0.7543 S33: 0.0774 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 387 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.9682 -33.5791 3.9360 REMARK 3 T TENSOR REMARK 3 T11: 1.4335 T22: 1.1844 REMARK 3 T33: 0.6647 T12: 0.4382 REMARK 3 T13: -0.0319 T23: -0.1089 REMARK 3 L TENSOR REMARK 3 L11: 3.9925 L22: 2.7897 REMARK 3 L33: 3.5979 L12: 0.1323 REMARK 3 L13: -1.4858 L23: -0.8683 REMARK 3 S TENSOR REMARK 3 S11: -0.1406 S12: 0.3922 S13: -0.2779 REMARK 3 S21: -0.4103 S22: 0.0101 S23: -0.1409 REMARK 3 S31: 1.3666 S32: 0.3932 S33: 0.1355 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 388 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5564 -34.2354 31.8196 REMARK 3 T TENSOR REMARK 3 T11: 1.2348 T22: 1.1892 REMARK 3 T33: 0.6313 T12: 0.3868 REMARK 3 T13: 0.0156 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.0160 L22: 4.6904 REMARK 3 L33: 4.4712 L12: 2.2308 REMARK 3 L13: 0.1365 L23: -0.7198 REMARK 3 S TENSOR REMARK 3 S11: -0.0930 S12: -0.1509 S13: -0.3330 REMARK 3 S21: 0.0667 S22: 0.1339 S23: -0.2196 REMARK 3 S31: 1.3228 S32: 0.2428 S33: -0.0541 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 506 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8869 -25.2670 32.8585 REMARK 3 T TENSOR REMARK 3 T11: 1.0708 T22: 1.5046 REMARK 3 T33: 0.8613 T12: 0.3115 REMARK 3 T13: -0.1944 T23: 0.1117 REMARK 3 L TENSOR REMARK 3 L11: 3.5533 L22: 7.0930 REMARK 3 L33: 4.7852 L12: 1.1407 REMARK 3 L13: -1.0278 L23: 0.4926 REMARK 3 S TENSOR REMARK 3 S11: 0.1810 S12: -0.6817 S13: -0.5805 REMARK 3 S21: 1.1492 S22: -0.1421 S23: -0.6924 REMARK 3 S31: 0.8315 S32: 2.2237 S33: -0.3495 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19936 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.85 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.16 REMARK 200 R MERGE FOR SHELL (I) : 0.73200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3TR5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: STMAA.18013.A.B1.PW38802 AT 20.5 MG/ML REMARK 280 WITH 3 MM MGCL2 AND 3 MM GDP AGAINST MORPHEUS SCREEN CONDITION REMARK 280 D5 CONTAINING 10% PEG 20,000, 20% PEG 550 MME, 0.02 MM EACH 1,6- REMARK 280 HEXANEDIOL, 1-BUTANOL, 1,2-PROPANEDIOL, 2-PROPANOL, 1,4- REMARK 280 BUTANEDIOL, 1,3-PROPANEDIOL, 0.1 M MOPES/HEPES PH 7.5, DIRECT REMARK 280 CRYO, UNIQUE PUCK ID TJA6-9, CRYSTAL TRACKING ID 315959D5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.38000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.69000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.69000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 113.38000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 49 REMARK 465 ALA A 50 REMARK 465 ARG A 51 REMARK 465 HIS A 52 REMARK 465 ALA A 53 REMARK 465 VAL A 531 REMARK 465 SER A 532 REMARK 465 VAL A 533 REMARK 465 GLY A 534 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 MET A 58 CG SD CE REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 VAL A 68 CG1 CG2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 175 CG CD OE1 NE2 REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 200 CG CD OE1 NE2 REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLN A 220 CG CD OE1 NE2 REMARK 470 ARG A 280 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 292 CG OD1 ND2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 322 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 LYS A 336 CG CD CE NZ REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 MET A 338 CG SD CE REMARK 470 LYS A 339 CG CD CE NZ REMARK 470 ASN A 342 CG OD1 ND2 REMARK 470 ARG A 351 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 353 CG1 CG2 CD1 REMARK 470 ARG A 402 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 GLN A 411 CG CD OE1 NE2 REMARK 470 LYS A 412 CG CD CE NZ REMARK 470 GLU A 458 CG CD OE1 OE2 REMARK 470 GLU A 462 CG CD OE1 OE2 REMARK 470 HIS A 473 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 476 CG OD1 ND2 REMARK 470 GLU A 477 CG CD OE1 OE2 REMARK 470 LYS A 478 CG CD CE NZ REMARK 470 LYS A 479 CG CD CE NZ REMARK 470 GLU A 482 CG CD OE1 OE2 REMARK 470 ARG A 484 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 485 CG CD OE1 OE2 REMARK 470 LYS A 486 CG CD CE NZ REMARK 470 LEU A 489 CG CD1 CD2 REMARK 470 ARG A 506 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 518 CG OD1 OD2 REMARK 470 ARG A 520 CG CD NE CZ NH1 NH2 REMARK 470 THR A 530 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 37 56.19 -92.36 REMARK 500 HIS A 90 -133.70 -90.73 REMARK 500 LYS A 141 40.51 71.27 REMARK 500 THR A 198 -155.93 -113.21 REMARK 500 ASP A 201 54.26 -98.34 REMARK 500 ALA A 235 -55.97 -136.28 REMARK 500 ARG A 333 -72.02 -61.66 REMARK 500 ALA A 382 90.67 -66.68 REMARK 500 LEU A 405 4.94 -69.91 REMARK 500 ASP A 518 32.43 -90.36 REMARK 500 ALA A 528 37.68 -99.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: STMAA.18013.A RELATED DB: TARGETTRACK DBREF 7SIQ A 1 534 UNP B2FR00 RF3_STRMK 1 534 SEQADV 7SIQ MET A -7 UNP B2FR00 EXPRESSION TAG SEQADV 7SIQ ALA A -6 UNP B2FR00 EXPRESSION TAG SEQADV 7SIQ HIS A -5 UNP B2FR00 EXPRESSION TAG SEQADV 7SIQ HIS A -4 UNP B2FR00 EXPRESSION TAG SEQADV 7SIQ HIS A -3 UNP B2FR00 EXPRESSION TAG SEQADV 7SIQ HIS A -2 UNP B2FR00 EXPRESSION TAG SEQADV 7SIQ HIS A -1 UNP B2FR00 EXPRESSION TAG SEQADV 7SIQ HIS A 0 UNP B2FR00 EXPRESSION TAG SEQRES 1 A 542 MET ALA HIS HIS HIS HIS HIS HIS MET SER GLU VAL ALA SEQRES 2 A 542 ASN GLU ALA SER ARG ARG ARG THR PHE ALA ILE ILE SER SEQRES 3 A 542 HIS PRO ASP ALA GLY LYS THR THR LEU THR GLU LYS LEU SEQRES 4 A 542 LEU LEU PHE GLY GLY ALA ILE GLN MET ALA GLY SER VAL SEQRES 5 A 542 LYS GLY ARG LYS ALA ALA ARG HIS ALA THR SER ASP TRP SEQRES 6 A 542 MET ALA LEU GLU LYS GLU ARG GLY ILE SER VAL THR SER SEQRES 7 A 542 SER VAL MET GLN PHE PRO TYR GLU ASP LYS ILE VAL ASN SEQRES 8 A 542 LEU LEU ASP THR PRO GLY HIS ALA ASP PHE GLY GLU ASP SEQRES 9 A 542 THR TYR ARG VAL LEU THR ALA VAL ASP SER ALA LEU MET SEQRES 10 A 542 VAL ILE ASP VAL ALA LYS GLY VAL GLU GLU ARG THR ILE SEQRES 11 A 542 LYS LEU MET GLU VAL CYS ARG LEU ARG ASP THR PRO ILE SEQRES 12 A 542 MET THR PHE ILE ASN LYS LEU ASP ARG GLU GLY LYS ASP SEQRES 13 A 542 PRO ILE GLU LEU LEU ASP GLU VAL GLU THR VAL LEU GLY SEQRES 14 A 542 ILE GLN CYS ALA PRO VAL THR TRP PRO ILE GLY MET GLY SEQRES 15 A 542 GLN ARG LEU LYS GLY VAL VAL HIS LEU LEU THR GLY GLU SEQRES 16 A 542 VAL HIS LEU TYR GLU PRO GLY ARG ASN PHE THR ARG GLN SEQRES 17 A 542 ASP SER THR ILE PHE PRO SER ILE ASP ALA PRO GLY LEU SEQRES 18 A 542 ALA GLU LYS ILE GLY ALA GLN MET LEU ALA ASP LEU ARG SEQRES 19 A 542 ASP GLU LEU GLU LEU VAL GLN GLY ALA SER HIS PRO PHE SEQRES 20 A 542 ASP LEU GLU ALA TYR ARG ALA GLY LYS GLN THR PRO VAL SEQRES 21 A 542 PHE PHE GLY SER GLY VAL ASN ASN PHE GLY VAL GLN PRO SEQRES 22 A 542 LEU LEU ASP PHE PHE VAL GLU HIS ALA PRO SER PRO GLN SEQRES 23 A 542 ALA ARG SER THR THR GLY ARG GLU ILE ALA PRO GLU GLU SEQRES 24 A 542 ASN LYS LEU THR GLY PHE VAL PHE LYS ILE GLN ALA ASN SEQRES 25 A 542 MET ASP PRO GLN HIS ARG ASP ARG VAL ALA PHE MET ARG SEQRES 26 A 542 VAL CYS SER GLY ARG PHE SER ALA GLY MET LYS THR PHE SEQRES 27 A 542 HIS VAL ARG THR GLY LYS GLU MET LYS LEU ALA ASN ALA SEQRES 28 A 542 LEU THR PHE MET ALA SER ASP ARG GLU ILE ALA ALA GLU SEQRES 29 A 542 ALA TRP PRO GLY ASP VAL ILE GLY ILE HIS ASN HIS GLY SEQRES 30 A 542 THR ILE SER ILE GLY ASP THR PHE THR GLU GLY GLU ALA SEQRES 31 A 542 VAL THR PHE THR GLY ILE PRO ASN PHE ALA PRO GLU LEU SEQRES 32 A 542 PHE ARG ARG ALA ARG LEU ARG ASP PRO LEU LYS LEU LYS SEQRES 33 A 542 GLN LEU GLN LYS GLY LEU ALA GLN LEU SER GLU GLU GLY SEQRES 34 A 542 ALA THR GLN PHE PHE ARG PRO LEU THR SER ASN ASP LEU SEQRES 35 A 542 ILE LEU GLY ALA VAL GLY VAL LEU GLN PHE ASP VAL ALA SEQRES 36 A 542 ALA TYR ARG LEU LYS ASP GLU TYR GLY VAL GLU ALA THR SEQRES 37 A 542 PHE GLU PRO VAL SER VAL THR THR ALA ARG TRP VAL HIS SEQRES 38 A 542 CYS SER ASN GLU LYS LYS LEU GLU GLU PHE ARG GLU LYS SEQRES 39 A 542 ASN ALA LEU ASN LEU ALA LEU ASP ALA ALA GLY HIS LEU SEQRES 40 A 542 VAL TYR LEU ALA PRO THR ARG VAL ASN LEU GLN LEU ALA SEQRES 41 A 542 GLN GLU ARG SER PRO ASP VAL ARG PHE SER ALA THR ARG SEQRES 42 A 542 GLU ALA ALA HIS THR VAL SER VAL GLY HET GDP A 601 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 HOH *5(H2 O) HELIX 1 AA1 SER A 2 ARG A 10 1 9 HELIX 2 AA2 GLY A 23 GLY A 35 1 13 HELIX 3 AA3 ALA A 37 ARG A 47 1 11 HELIX 4 AA4 SER A 55 GLY A 65 1 11 HELIX 5 AA5 GLY A 94 LEU A 101 1 8 HELIX 6 AA6 THR A 102 VAL A 104 5 3 HELIX 7 AA7 GLU A 118 ASP A 132 1 15 HELIX 8 AA8 ASP A 148 GLY A 161 1 14 HELIX 9 AA9 MET A 173 LEU A 177 5 5 HELIX 10 AB1 LEU A 213 GLY A 218 1 6 HELIX 11 AB2 GLY A 218 GLY A 234 1 17 HELIX 12 AB3 ASP A 240 ALA A 246 1 7 HELIX 13 AB4 SER A 256 ASN A 260 5 5 HELIX 14 AB5 GLY A 262 ALA A 274 1 13 HELIX 15 AB6 ASP A 403 LEU A 405 5 3 HELIX 16 AB7 LYS A 406 GLU A 420 1 15 HELIX 17 AB8 VAL A 441 GLU A 454 1 14 HELIX 18 AB9 ASN A 476 GLU A 485 1 10 HELIX 19 AC1 ASN A 487 LEU A 489 5 3 HELIX 20 AC2 THR A 505 SER A 516 1 12 SHEET 1 AA1 7 VAL A 72 TYR A 77 0 SHEET 2 AA1 7 LYS A 80 LEU A 85 -1 O LEU A 84 N MET A 73 SHEET 3 AA1 7 ARG A 11 SER A 18 1 N PHE A 14 O ASN A 83 SHEET 4 AA1 7 SER A 106 ASP A 112 1 O LEU A 108 N ALA A 15 SHEET 5 AA1 7 ILE A 135 ASN A 140 1 O MET A 136 N MET A 109 SHEET 6 AA1 7 GLN A 249 PHE A 254 1 O PHE A 253 N ILE A 139 SHEET 7 AA1 7 GLN A 163 PRO A 166 1 N ALA A 165 O THR A 250 SHEET 1 AA2 2 THR A 168 ILE A 171 0 SHEET 2 AA2 2 GLY A 179 HIS A 182 -1 O VAL A 181 N TRP A 169 SHEET 1 AA3 2 VAL A 188 HIS A 189 0 SHEET 2 AA3 2 ILE A 204 PHE A 205 -1 O PHE A 205 N VAL A 188 SHEET 1 AA4 2 ARG A 280 SER A 281 0 SHEET 2 AA4 2 GLU A 286 ILE A 287 -1 O ILE A 287 N ARG A 280 SHEET 1 AA5 6 GLU A 337 LYS A 339 0 SHEET 2 AA5 6 LYS A 328 HIS A 331 -1 N THR A 329 O MET A 338 SHEET 3 AA5 6 THR A 376 THR A 378 -1 O THR A 378 N PHE A 330 SHEET 4 AA5 6 THR A 295 ALA A 303 -1 N GLY A 296 O PHE A 377 SHEET 5 AA5 6 ARG A 312 SER A 320 -1 O PHE A 315 N LYS A 300 SHEET 6 AA5 6 VAL A 362 ASN A 367 -1 O ILE A 363 N MET A 316 SHEET 1 AA6 2 PHE A 323 SER A 324 0 SHEET 2 AA6 2 GLU A 356 ALA A 357 -1 O ALA A 357 N PHE A 323 SHEET 1 AA7 2 PRO A 389 PHE A 391 0 SHEET 2 AA7 2 THR A 524 GLU A 526 -1 O ARG A 525 N ASN A 390 SHEET 1 AA8 8 ALA A 459 PRO A 463 0 SHEET 2 AA8 8 LEU A 395 LEU A 401 -1 N ARG A 398 O GLU A 462 SHEET 3 AA8 8 ILE A 435 ALA A 438 -1 O LEU A 436 N ARG A 397 SHEET 4 AA8 8 GLN A 424 PRO A 428 -1 N PHE A 426 O ILE A 435 SHEET 5 AA8 8 LEU A 491 LEU A 493 -1 O LEU A 493 N ARG A 427 SHEET 6 AA8 8 LEU A 499 ALA A 503 -1 O VAL A 500 N ALA A 492 SHEET 7 AA8 8 THR A 468 HIS A 473 -1 N THR A 468 O ALA A 503 SHEET 8 AA8 8 ARG A 520 SER A 522 -1 O SER A 522 N TRP A 471 CRYST1 96.540 96.540 170.070 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010358 0.005980 0.000000 0.00000 SCALE2 0.000000 0.011961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005880 0.00000