HEADER TOXIN, TRANSFERASE/INHIBITOR 20-OCT-21 7SKI TITLE PERTUSSIS TOXIN IN COMPLEX WITH PJ34 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERTUSSIS TOXIN SUBUNIT 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PTX S1,ISLET-ACTIVATING PROTEIN S1,IAP S1,NAD-DEPENDENT ADP- COMPND 5 RIBOSYLTRANSFERASE; COMPND 6 EC: 2.4.2.-, 2.4.2.30; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 520; SOURCE 4 GENE: PTXA, BP3783; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS TOXIN, ADP-RIBOSYLTRANSFERASE, TRANSFERASE, WHOOPING COUGH, KEYWDS 2 INHIBITOR, PERTUSSIS, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.R.LITTLER,T.BEDDOE,A.PULLIAINEN,J.ROSSJOHN REVDAT 4 18-OCT-23 7SKI 1 REMARK REVDAT 3 18-MAY-22 7SKI 1 JRNL REVDAT 2 20-APR-22 7SKI 1 JRNL REVDAT 1 13-APR-22 7SKI 0 JRNL AUTH M.SAKARI,M.T.TRAN,J.ROSSJOHN,A.T.PULLIAINEN,T.BEDDOE, JRNL AUTH 2 D.R.LITTLER JRNL TITL CRYSTAL STRUCTURES OF PERTUSSIS TOXIN WITH NAD + AND ANALOGS JRNL TITL 2 PROVIDE STRUCTURAL INSIGHTS INTO THE MECHANISM OF ITS JRNL TITL 3 CYTOSOLIC ADP-RIBOSYLATION ACTIVITY. JRNL REF J.BIOL.CHEM. V. 298 01892 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35378130 JRNL DOI 10.1016/J.JBC.2022.101892 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.338 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 142692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.962 REMARK 3 FREE R VALUE TEST SET COUNT : 7080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.8000 - 3.4110 1.00 4841 251 0.1567 0.1526 REMARK 3 2 3.4110 - 2.7091 1.00 4710 250 0.1667 0.1829 REMARK 3 3 2.7091 - 2.3671 1.00 4685 246 0.1776 0.1708 REMARK 3 4 2.3671 - 2.1509 0.99 4688 234 0.1614 0.1771 REMARK 3 5 2.1509 - 1.9968 1.00 4639 268 0.1646 0.1615 REMARK 3 6 1.9968 - 1.8792 0.99 4637 225 0.1649 0.1784 REMARK 3 7 1.8792 - 1.7851 0.99 4610 229 0.1713 0.1904 REMARK 3 8 1.7851 - 1.7074 0.99 4637 246 0.1650 0.1881 REMARK 3 9 1.7074 - 1.6417 0.99 4561 254 0.1615 0.1662 REMARK 3 10 1.6417 - 1.5851 0.98 4599 229 0.1601 0.1550 REMARK 3 11 1.5851 - 1.5355 0.98 4590 232 0.1628 0.1712 REMARK 3 12 1.5355 - 1.4916 0.98 4526 245 0.1615 0.1880 REMARK 3 13 1.4916 - 1.4524 0.98 4549 222 0.1709 0.1824 REMARK 3 14 1.4524 - 1.4170 0.98 4584 208 0.1673 0.1827 REMARK 3 15 1.4170 - 1.3848 0.97 4523 227 0.1724 0.1762 REMARK 3 16 1.3848 - 1.3553 0.97 4494 254 0.1805 0.1962 REMARK 3 17 1.3553 - 1.3282 0.98 4512 242 0.1789 0.1843 REMARK 3 18 1.3282 - 1.3031 0.96 4493 244 0.1817 0.1814 REMARK 3 19 1.3031 - 1.2798 0.97 4482 231 0.1809 0.1900 REMARK 3 20 1.2798 - 1.2582 0.96 4484 221 0.1858 0.2040 REMARK 3 21 1.2582 - 1.2379 0.96 4484 211 0.1924 0.1849 REMARK 3 22 1.2379 - 1.2188 0.96 4448 238 0.1899 0.1953 REMARK 3 23 1.2188 - 1.2009 0.96 4475 228 0.1901 0.2028 REMARK 3 24 1.2009 - 1.1840 0.96 4458 224 0.1928 0.1920 REMARK 3 25 1.1840 - 1.1680 0.95 4399 250 0.1978 0.2031 REMARK 3 26 1.1680 - 1.1528 0.96 4381 242 0.2006 0.2123 REMARK 3 27 1.1528 - 1.1384 0.95 4393 227 0.2029 0.2133 REMARK 3 28 1.1384 - 1.1247 0.95 4382 241 0.2076 0.2430 REMARK 3 29 1.1247 - 1.1116 0.95 4413 250 0.2227 0.2464 REMARK 3 30 1.1116 - 1.1000 0.85 3935 211 0.2414 0.2425 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.094 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2973 REMARK 3 ANGLE : 0.916 4052 REMARK 3 CHIRALITY : 0.071 409 REMARK 3 PLANARITY : 0.005 544 REMARK 3 DIHEDRAL : 23.287 1070 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9616 -2.1983 77.9438 REMARK 3 T TENSOR REMARK 3 T11: 0.0731 T22: 0.0329 REMARK 3 T33: 0.0610 T12: -0.0038 REMARK 3 T13: -0.0072 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.0082 L22: 0.6218 REMARK 3 L33: 1.5866 L12: 0.5098 REMARK 3 L13: 0.2451 L23: 0.1588 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: -0.0158 S13: -0.0186 REMARK 3 S21: -0.0511 S22: 0.0138 S23: 0.1130 REMARK 3 S31: -0.0697 S32: -0.0530 S33: 0.0188 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1299 -11.5077 71.8461 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.0535 REMARK 3 T33: 0.0717 T12: 0.0066 REMARK 3 T13: 0.0042 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.5685 L22: 1.6573 REMARK 3 L33: 0.7198 L12: 1.4413 REMARK 3 L13: 0.0935 L23: 0.1625 REMARK 3 S TENSOR REMARK 3 S11: -0.0690 S12: 0.0970 S13: -0.1567 REMARK 3 S21: -0.0725 S22: 0.0520 S23: -0.0417 REMARK 3 S31: 0.0169 S32: 0.0381 S33: 0.0234 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1270 -17.4323 80.8646 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.0994 REMARK 3 T33: 0.1510 T12: -0.0135 REMARK 3 T13: 0.0148 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 4.9660 L22: 4.1714 REMARK 3 L33: 4.7756 L12: 0.1510 REMARK 3 L13: -0.1811 L23: 0.8193 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.2013 S13: -0.4860 REMARK 3 S21: 0.1551 S22: -0.1004 S23: -0.0092 REMARK 3 S31: 0.4028 S32: -0.0155 S33: 0.0924 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1844 -13.7312 78.4987 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.0485 REMARK 3 T33: 0.1099 T12: 0.0119 REMARK 3 T13: 0.0118 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.3892 L22: 0.8139 REMARK 3 L33: 1.5711 L12: 0.3540 REMARK 3 L13: 0.2127 L23: 1.1057 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.0915 S13: -0.2499 REMARK 3 S21: 0.1919 S22: 0.0395 S23: 0.0575 REMARK 3 S31: 0.2141 S32: 0.0250 S33: 0.0096 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8277 -7.2190 91.7394 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: 0.1051 REMARK 3 T33: 0.0760 T12: 0.0025 REMARK 3 T13: 0.0078 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.9451 L22: 1.3623 REMARK 3 L33: 1.3749 L12: -1.3344 REMARK 3 L13: 1.1663 L23: -0.8766 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.1323 S13: 0.0062 REMARK 3 S21: 0.0839 S22: -0.0109 S23: -0.0530 REMARK 3 S31: 0.0082 S32: 0.0287 S33: 0.0285 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2246 -6.1492 80.7398 REMARK 3 T TENSOR REMARK 3 T11: 0.0570 T22: 0.0405 REMARK 3 T33: 0.0529 T12: 0.0049 REMARK 3 T13: 0.0189 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.2159 L22: 0.9072 REMARK 3 L33: 1.2648 L12: 0.0791 REMARK 3 L13: 0.4841 L23: -0.0874 REMARK 3 S TENSOR REMARK 3 S11: -0.0968 S12: 0.0117 S13: 0.0031 REMARK 3 S21: 0.0409 S22: 0.0003 S23: -0.0326 REMARK 3 S31: -0.0586 S32: 0.1026 S33: 0.0410 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9806 -9.4618 77.3410 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.1277 REMARK 3 T33: 0.2263 T12: -0.0235 REMARK 3 T13: -0.0462 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.6558 L22: 1.2792 REMARK 3 L33: 1.0047 L12: 1.1286 REMARK 3 L13: -0.6231 L23: -0.4973 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: 0.0242 S13: -0.0170 REMARK 3 S21: -0.1861 S22: 0.0563 S23: 0.4147 REMARK 3 S31: 0.1601 S32: -0.3114 S33: -0.0433 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4105 -15.7645 87.4104 REMARK 3 T TENSOR REMARK 3 T11: 0.3878 T22: 0.2855 REMARK 3 T33: 0.4701 T12: -0.1050 REMARK 3 T13: -0.0096 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.6577 L22: 0.1808 REMARK 3 L33: 1.2592 L12: 0.5472 REMARK 3 L13: 1.4474 L23: 0.4798 REMARK 3 S TENSOR REMARK 3 S11: 0.3806 S12: -0.2794 S13: -0.6132 REMARK 3 S21: 0.2565 S22: 0.0276 S23: 0.5096 REMARK 3 S31: 0.6908 S32: -0.7498 S33: -0.2164 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8095 -5.5100 82.2198 REMARK 3 T TENSOR REMARK 3 T11: 0.0743 T22: 0.0861 REMARK 3 T33: 0.0910 T12: -0.0028 REMARK 3 T13: 0.0091 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.7418 L22: 0.5465 REMARK 3 L33: 1.9077 L12: -0.3119 REMARK 3 L13: -0.7483 L23: 0.5550 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: -0.0474 S13: 0.0107 REMARK 3 S21: 0.0021 S22: -0.0459 S23: 0.0994 REMARK 3 S31: -0.0371 S32: -0.1523 S33: 0.0130 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4921 -2.5087 75.6138 REMARK 3 T TENSOR REMARK 3 T11: 0.0571 T22: 0.0328 REMARK 3 T33: 0.0488 T12: -0.0075 REMARK 3 T13: 0.0066 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.8090 L22: 0.8313 REMARK 3 L33: 0.3911 L12: 0.2450 REMARK 3 L13: 0.0417 L23: 0.0083 REMARK 3 S TENSOR REMARK 3 S11: -0.0761 S12: 0.0571 S13: -0.0032 REMARK 3 S21: -0.0656 S22: 0.0213 S23: 0.0180 REMARK 3 S31: -0.0594 S32: 0.0523 S33: 0.0480 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1965 -0.1292 87.4788 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1380 REMARK 3 T33: 0.0931 T12: -0.0177 REMARK 3 T13: -0.0309 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 0.2412 L22: 1.5593 REMARK 3 L33: 4.4818 L12: -0.4779 REMARK 3 L13: 1.0227 L23: -2.4183 REMARK 3 S TENSOR REMARK 3 S11: -0.0935 S12: -0.0895 S13: 0.0254 REMARK 3 S21: 0.3103 S22: -0.0688 S23: -0.1337 REMARK 3 S31: -0.3533 S32: 0.1320 S33: 0.1147 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7576 0.4361 68.1968 REMARK 3 T TENSOR REMARK 3 T11: 0.1268 T22: 0.0877 REMARK 3 T33: 0.1035 T12: -0.0021 REMARK 3 T13: -0.0345 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.7513 L22: 0.9548 REMARK 3 L33: 0.8574 L12: 0.7066 REMARK 3 L13: -0.2130 L23: -0.2907 REMARK 3 S TENSOR REMARK 3 S11: -0.1748 S12: 0.3982 S13: 0.1323 REMARK 3 S21: -0.1815 S22: 0.1216 S23: 0.1806 REMARK 3 S31: -0.1334 S32: -0.1035 S33: 0.0620 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1206 -1.6047 105.6727 REMARK 3 T TENSOR REMARK 3 T11: 0.0913 T22: 0.1162 REMARK 3 T33: 0.1033 T12: -0.0129 REMARK 3 T13: 0.0199 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.3770 L22: 0.9297 REMARK 3 L33: 1.3313 L12: -0.8862 REMARK 3 L13: 0.0541 L23: -0.2525 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: -0.0651 S13: -0.1917 REMARK 3 S21: 0.0166 S22: 0.0390 S23: 0.1376 REMARK 3 S31: 0.1180 S32: -0.0347 S33: 0.0385 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7364 1.6880 91.6128 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.1241 REMARK 3 T33: 0.1296 T12: -0.0054 REMARK 3 T13: -0.0008 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.7962 L22: 0.6034 REMARK 3 L33: 0.5613 L12: 0.6556 REMARK 3 L13: 0.3710 L23: 0.1033 REMARK 3 S TENSOR REMARK 3 S11: -0.1218 S12: 0.1260 S13: -0.1756 REMARK 3 S21: -0.1102 S22: 0.1134 S23: 0.0195 REMARK 3 S31: -0.0548 S32: 0.0083 S33: 0.0027 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5600 -6.3982 100.5103 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: 0.1071 REMARK 3 T33: 0.0966 T12: -0.0019 REMARK 3 T13: 0.0187 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.7825 L22: 0.3009 REMARK 3 L33: 1.5806 L12: -0.3652 REMARK 3 L13: -0.3311 L23: 0.3649 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: -0.0692 S13: -0.0709 REMARK 3 S21: 0.0567 S22: -0.0181 S23: 0.0472 REMARK 3 S31: 0.1835 S32: 0.0743 S33: 0.0744 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5054 9.8919 102.3465 REMARK 3 T TENSOR REMARK 3 T11: 0.0986 T22: 0.1011 REMARK 3 T33: 0.0699 T12: -0.0083 REMARK 3 T13: 0.0088 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.9739 L22: 1.2879 REMARK 3 L33: 1.0585 L12: 0.2895 REMARK 3 L13: -0.0372 L23: 0.3787 REMARK 3 S TENSOR REMARK 3 S11: -0.1361 S12: -0.0998 S13: 0.1895 REMARK 3 S21: -0.0796 S22: 0.0167 S23: 0.0506 REMARK 3 S31: -0.1994 S32: -0.0581 S33: 0.0817 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260472. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-94 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 142710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.099 REMARK 200 RESOLUTION RANGE LOW (A) : 21.831 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PRT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M NACL, 0.1M REMARK 280 TRIS(HYDROXYMETHYL)AMINOMETHANE PH 8.0, 8% W/V PEG 8000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.27050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 GLY A 1 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 GLY B 1 REMARK 465 GLN B 42 REMARK 465 VAL B 43 REMARK 465 GLY B 44 REMARK 465 SER B 45 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 128 O HOH B 301 2.01 REMARK 500 OH TYR A 59 O HOH A 301 2.06 REMARK 500 NH2 ARG A 143 O HOH A 302 2.07 REMARK 500 NE2 GLN A 42 OD1 ASN B 114 2.09 REMARK 500 NH1 ARG B 57 OE2 GLU B 61 2.11 REMARK 500 O HOH A 441 O HOH A 496 2.12 REMARK 500 NH1 ARG A 57 OE2 GLU A 61 2.12 REMARK 500 O HOH A 309 O HOH A 496 2.13 REMARK 500 NH1 ARG B 172 O HOH B 302 2.13 REMARK 500 O HOH A 348 O HOH A 514 2.15 REMARK 500 OE2 GLU B 70 O HOH B 303 2.16 REMARK 500 O HOH A 360 O HOH A 466 2.16 REMARK 500 O HOH B 312 O HOH B 371 2.17 REMARK 500 O HOH B 462 O HOH B 485 2.17 REMARK 500 O HOH A 460 O HOH A 474 2.18 REMARK 500 OE1 GLU A 106 O HOH A 303 2.18 REMARK 500 O HOH B 402 O HOH B 419 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 479 O HOH B 330 2547 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 117 CD ARG A 117 NE -0.190 REMARK 500 ARG A 117 NE ARG A 117 CZ -0.209 REMARK 500 ARG A 117 CZ ARG A 117 NH1 -0.191 REMARK 500 ARG A 117 CZ ARG A 117 NH2 -0.169 REMARK 500 ARG A 165 CD ARG A 165 NE -0.151 REMARK 500 ARG A 165 NE ARG A 165 CZ -0.173 REMARK 500 ARG A 165 CZ ARG A 165 NH1 -0.108 REMARK 500 ARG A 165 CZ ARG A 165 NH2 -0.157 REMARK 500 ARG B 143 NE ARG B 143 CZ -0.082 REMARK 500 ARG B 143 CZ ARG B 143 NH1 -0.098 REMARK 500 GLU B 155 CD GLU B 155 OE1 -0.091 REMARK 500 GLU B 155 CD GLU B 155 OE2 -0.084 REMARK 500 GLN B 169 CD GLN B 169 OE1 -0.190 REMARK 500 GLN B 169 CD GLN B 169 NE2 -0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 155 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 GLU A 155 OE1 - CD - OE2 ANGL. DEV. = -11.0 DEGREES REMARK 500 ARG B 143 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 45 21.69 -140.57 REMARK 500 ALA A 115 -69.84 -101.72 REMARK 500 ARG A 134 -45.68 76.38 REMARK 500 ARG B 134 -52.58 76.39 REMARK 500 REMARK 500 REMARK: NULL DBREF 7SKI A 2 180 UNP P04977 TOX1_BORPE 36 214 DBREF 7SKI B 2 180 UNP P04977 TOX1_BORPE 36 214 SEQADV 7SKI GLY A -1 UNP P04977 EXPRESSION TAG SEQADV 7SKI PRO A 0 UNP P04977 EXPRESSION TAG SEQADV 7SKI GLY A 1 UNP P04977 EXPRESSION TAG SEQADV 7SKI GLU A 34 UNP P04977 ASP 68 VARIANT SEQADV 7SKI SER A 41 UNP P04977 CYS 75 ENGINEERED MUTATION SEQADV 7SKI GLY B -1 UNP P04977 EXPRESSION TAG SEQADV 7SKI PRO B 0 UNP P04977 EXPRESSION TAG SEQADV 7SKI GLY B 1 UNP P04977 EXPRESSION TAG SEQADV 7SKI GLU B 34 UNP P04977 ASP 68 VARIANT SEQADV 7SKI SER B 41 UNP P04977 CYS 75 ENGINEERED MUTATION SEQRES 1 A 182 GLY PRO GLY ASP PRO PRO ALA THR VAL TYR ARG TYR ASP SEQRES 2 A 182 SER ARG PRO PRO GLU ASP VAL PHE GLN ASN GLY PHE THR SEQRES 3 A 182 ALA TRP GLY ASN ASN ASP ASN VAL LEU GLU HIS LEU THR SEQRES 4 A 182 GLY ARG SER SER GLN VAL GLY SER SER ASN SER ALA PHE SEQRES 5 A 182 VAL SER THR SER SER SER ARG ARG TYR THR GLU VAL TYR SEQRES 6 A 182 LEU GLU HIS ARG MET GLN GLU ALA VAL GLU ALA GLU ARG SEQRES 7 A 182 ALA GLY ARG GLY THR GLY HIS PHE ILE GLY TYR ILE TYR SEQRES 8 A 182 GLU VAL ARG ALA ASP ASN ASN PHE TYR GLY ALA ALA SER SEQRES 9 A 182 SER TYR PHE GLU TYR VAL ASP THR TYR GLY ASP ASN ALA SEQRES 10 A 182 GLY ARG ILE LEU ALA GLY ALA LEU ALA THR TYR GLN SER SEQRES 11 A 182 GLU TYR LEU ALA HIS ARG ARG ILE PRO PRO GLU ASN ILE SEQRES 12 A 182 ARG ARG VAL THR ARG VAL TYR HIS ASN GLY ILE THR GLY SEQRES 13 A 182 GLU THR THR THR THR GLU TYR SER ASN ALA ARG TYR VAL SEQRES 14 A 182 SER GLN GLN THR ARG ALA ASN PRO ASN PRO TYR THR SER SEQRES 1 B 182 GLY PRO GLY ASP PRO PRO ALA THR VAL TYR ARG TYR ASP SEQRES 2 B 182 SER ARG PRO PRO GLU ASP VAL PHE GLN ASN GLY PHE THR SEQRES 3 B 182 ALA TRP GLY ASN ASN ASP ASN VAL LEU GLU HIS LEU THR SEQRES 4 B 182 GLY ARG SER SER GLN VAL GLY SER SER ASN SER ALA PHE SEQRES 5 B 182 VAL SER THR SER SER SER ARG ARG TYR THR GLU VAL TYR SEQRES 6 B 182 LEU GLU HIS ARG MET GLN GLU ALA VAL GLU ALA GLU ARG SEQRES 7 B 182 ALA GLY ARG GLY THR GLY HIS PHE ILE GLY TYR ILE TYR SEQRES 8 B 182 GLU VAL ARG ALA ASP ASN ASN PHE TYR GLY ALA ALA SER SEQRES 9 B 182 SER TYR PHE GLU TYR VAL ASP THR TYR GLY ASP ASN ALA SEQRES 10 B 182 GLY ARG ILE LEU ALA GLY ALA LEU ALA THR TYR GLN SER SEQRES 11 B 182 GLU TYR LEU ALA HIS ARG ARG ILE PRO PRO GLU ASN ILE SEQRES 12 B 182 ARG ARG VAL THR ARG VAL TYR HIS ASN GLY ILE THR GLY SEQRES 13 B 182 GLU THR THR THR THR GLU TYR SER ASN ALA ARG TYR VAL SEQRES 14 B 182 SER GLN GLN THR ARG ALA ASN PRO ASN PRO TYR THR SER HET P34 A 201 22 HET P34 B 201 22 HETNAM P34 N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6- HETNAM 2 P34 DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE FORMUL 3 P34 2(C17 H17 N3 O2) FORMUL 5 HOH *422(H2 O) HELIX 1 AA1 PRO A 14 GLY A 22 1 9 HELIX 2 AA2 ASN A 31 GLY A 38 1 8 HELIX 3 AA3 SER A 56 ALA A 77 1 22 HELIX 4 AA4 ALA A 100 GLY A 112 1 13 HELIX 5 AA5 LEU A 119 GLN A 127 1 9 HELIX 6 AA6 PRO A 137 GLU A 139 5 3 HELIX 7 AA7 PRO B 14 GLY B 22 1 9 HELIX 8 AA8 ASN B 31 SER B 41 1 11 HELIX 9 AA9 SER B 56 ALA B 77 1 22 HELIX 10 AB1 ALA B 100 GLY B 112 1 13 HELIX 11 AB2 ASN B 114 GLN B 127 1 14 HELIX 12 AB3 PRO B 137 GLU B 139 5 3 SHEET 1 AA1 4 THR A 6 ASP A 11 0 SHEET 2 AA1 4 HIS A 83 ARG A 92 -1 O VAL A 91 N VAL A 7 SHEET 3 AA1 4 ILE A 141 ASN A 150 -1 O VAL A 147 N GLY A 86 SHEET 4 AA1 4 THR A 156 SER A 162 -1 O THR A 159 N ARG A 146 SHEET 1 AA2 2 PHE A 23 THR A 24 0 SHEET 2 AA2 2 ARG A 135 ILE A 136 -1 O ILE A 136 N PHE A 23 SHEET 1 AA3 2 SER A 41 GLN A 42 0 SHEET 2 AA3 2 SER A 45 SER A 46 -1 O SER A 45 N GLN A 42 SHEET 1 AA4 3 PHE A 50 SER A 54 0 SHEET 2 AA4 3 GLU A 129 HIS A 133 -1 O ALA A 132 N VAL A 51 SHEET 3 AA4 3 PHE A 97 GLY A 99 -1 N TYR A 98 O LEU A 131 SHEET 1 AA5 4 THR B 6 ASP B 11 0 SHEET 2 AA5 4 PHE B 84 ARG B 92 -1 O VAL B 91 N VAL B 7 SHEET 3 AA5 4 ILE B 141 HIS B 149 -1 O HIS B 149 N PHE B 84 SHEET 4 AA5 4 THR B 156 SER B 162 -1 O THR B 159 N ARG B 146 SHEET 1 AA6 2 PHE B 23 THR B 24 0 SHEET 2 AA6 2 ARG B 135 ILE B 136 -1 O ILE B 136 N PHE B 23 SHEET 1 AA7 3 PHE B 50 SER B 54 0 SHEET 2 AA7 3 GLU B 129 HIS B 133 -1 O ALA B 132 N VAL B 51 SHEET 3 AA7 3 PHE B 97 GLY B 99 -1 N TYR B 98 O LEU B 131 CRYST1 59.369 42.541 72.775 90.00 95.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016844 0.000000 0.001708 0.00000 SCALE2 0.000000 0.023507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013811 0.00000