HEADER TRANSCRIPTION 25-OCT-21 7SLW TITLE COMPLEX STRUCTURE OF CDYL2 WITH AN ANTAGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMODOMAIN Y-LIKE PROTEIN 2; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: CHROMODOMAIN; COMPND 5 SYNONYM: CDY-LIKE 2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CHROMODOMAIN Y-LIKE PROTEIN 2; COMPND 9 CHAIN: G, H, I, J, K, L; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDYL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CDYL2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS CHROMODOMAIN Y-LIKE PROTEIN, TRANSCRIPTION REGULATION, KEYWDS 2 SPERMATOGENESIS, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.BELDAR,A.DONG,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (SGC) REVDAT 3 15-NOV-23 7SLW 1 LINK REVDAT 2 18-OCT-23 7SLW 1 REMARK REVDAT 1 17-NOV-21 7SLW 0 JRNL AUTH S.BELDAR,A.DONG,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL COMPLEX STRUCTURE OF CDYL2 WITH AN ANTAGONIST JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 19030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1061 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1064 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3770 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3137 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.69000 REMARK 3 B22 (A**2) : -1.98000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.401 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.252 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.245 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3244 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2759 ; 0.002 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4407 ; 1.492 ; 1.749 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6365 ; 1.128 ; 1.732 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 9.126 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;26.212 ;22.757 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 463 ;14.907 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.967 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3614 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 767 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 58 REMARK 3 RESIDUE RANGE : G 1000 G 1005 REMARK 3 ORIGIN FOR THE GROUP (A): 6.307 13.731 16.264 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.0198 REMARK 3 T33: 0.1957 T12: -0.0016 REMARK 3 T13: -0.0563 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 6.9039 L22: 5.5782 REMARK 3 L33: 5.0050 L12: 1.6392 REMARK 3 L13: 1.9169 L23: 0.2704 REMARK 3 S TENSOR REMARK 3 S11: -0.1633 S12: -0.1373 S13: 0.2984 REMARK 3 S21: -0.1732 S22: 0.0309 S23: 0.3556 REMARK 3 S31: 0.0999 S32: 0.0538 S33: 0.1323 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 58 REMARK 3 RESIDUE RANGE : H 1000 H 1005 REMARK 3 RESIDUE RANGE : A 1101 A 1101 REMARK 3 ORIGIN FOR THE GROUP (A): 21.623 17.258 33.700 REMARK 3 T TENSOR REMARK 3 T11: 0.1764 T22: 0.1083 REMARK 3 T33: 0.1584 T12: 0.0292 REMARK 3 T13: -0.0481 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 5.0981 L22: 7.1487 REMARK 3 L33: 8.8087 L12: 0.1041 REMARK 3 L13: 4.0102 L23: -0.6572 REMARK 3 S TENSOR REMARK 3 S11: 0.2441 S12: -0.0117 S13: -0.1468 REMARK 3 S21: 0.1756 S22: -0.3058 S23: -0.1914 REMARK 3 S31: 0.7659 S32: 0.0299 S33: 0.0617 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 58 REMARK 3 RESIDUE RANGE : I 1000 I 1005 REMARK 3 ORIGIN FOR THE GROUP (A): 20.722 32.328 16.863 REMARK 3 T TENSOR REMARK 3 T11: 0.3073 T22: 0.0467 REMARK 3 T33: 0.1230 T12: -0.0879 REMARK 3 T13: 0.0196 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 8.4633 L22: 7.1996 REMARK 3 L33: 4.2049 L12: -0.8561 REMARK 3 L13: -0.8976 L23: 0.0397 REMARK 3 S TENSOR REMARK 3 S11: 0.0824 S12: 0.0298 S13: 0.5580 REMARK 3 S21: -0.7585 S22: -0.0814 S23: -0.3054 REMARK 3 S31: -0.5242 S32: 0.1297 S33: -0.0009 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 58 REMARK 3 RESIDUE RANGE : J 1000 J 1005 REMARK 3 ORIGIN FOR THE GROUP (A): -11.115 -0.543 10.541 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.0448 REMARK 3 T33: 0.3648 T12: -0.0866 REMARK 3 T13: -0.0658 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 6.5887 L22: 1.7574 REMARK 3 L33: 2.8582 L12: 0.4218 REMARK 3 L13: 2.5146 L23: -0.8447 REMARK 3 S TENSOR REMARK 3 S11: 0.2711 S12: -0.4210 S13: -0.1684 REMARK 3 S21: 0.5200 S22: -0.1559 S23: 0.1219 REMARK 3 S31: 0.1679 S32: -0.1772 S33: -0.1152 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 58 REMARK 3 RESIDUE RANGE : K 1000 K 1005 REMARK 3 ORIGIN FOR THE GROUP (A): -27.619 1.443 -6.009 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 0.0349 REMARK 3 T33: 0.2385 T12: 0.0562 REMARK 3 T13: -0.0737 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 6.7292 L22: 6.4515 REMARK 3 L33: 2.6917 L12: 1.8168 REMARK 3 L13: 1.3411 L23: 0.2829 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: -0.3019 S13: 0.6007 REMARK 3 S21: -0.4615 S22: -0.1770 S23: 0.1306 REMARK 3 S31: -0.3651 S32: -0.1371 S33: 0.2890 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 58 REMARK 3 RESIDUE RANGE : L 1000 L 1005 REMARK 3 ORIGIN FOR THE GROUP (A): -11.761 -15.378 -7.810 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.0255 REMARK 3 T33: 0.3408 T12: 0.0128 REMARK 3 T13: 0.0475 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 4.4878 L22: 3.5355 REMARK 3 L33: 5.3246 L12: -1.0828 REMARK 3 L13: -2.6083 L23: 0.8082 REMARK 3 S TENSOR REMARK 3 S11: -0.1360 S12: 0.0976 S13: 0.0257 REMARK 3 S21: -0.4450 S22: 0.0148 S23: -0.5245 REMARK 3 S31: 0.0189 S32: 0.1847 S33: 0.1212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7SLW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000259220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20142 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4HAE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M NH4OAC, 0.1M BIS REMARK 280 -TRIS, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.47650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.37050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.63250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.37050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.47650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.63250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G, B, H, C, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, J, E, K, F, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 HIS A 59 REMARK 465 MET A 60 REMARK 465 SER A 61 REMARK 465 LYS A 62 REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 59 REMARK 465 MET B 60 REMARK 465 SER B 61 REMARK 465 LYS B 62 REMARK 465 GLY C 1 REMARK 465 ALA C 2 REMARK 465 SER C 3 REMARK 465 HIS C 59 REMARK 465 MET C 60 REMARK 465 SER C 61 REMARK 465 LYS C 62 REMARK 465 GLY D 1 REMARK 465 HIS D 59 REMARK 465 MET D 60 REMARK 465 SER D 61 REMARK 465 LYS D 62 REMARK 465 GLY E 1 REMARK 465 HIS E 59 REMARK 465 MET E 60 REMARK 465 SER E 61 REMARK 465 LYS E 62 REMARK 465 HIS F 59 REMARK 465 MET F 60 REMARK 465 SER F 61 REMARK 465 LYS F 62 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 22 NZ REMARK 470 LYS A 30 NZ REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LEU A 58 CA C O CB CG CD1 CD2 REMARK 470 SER B 3 OG REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LYS B 30 NZ REMARK 470 GLU B 36 OE1 OE2 REMARK 470 LEU B 58 CA C O CB CG CD1 CD2 REMARK 470 LYS C 19 CG CD CE NZ REMARK 470 LYS C 20 CE NZ REMARK 470 LYS C 22 CG CD CE NZ REMARK 470 LYS C 30 CE NZ REMARK 470 GLU C 54 CD OE1 OE2 REMARK 470 LEU C 58 CA C O CB CG CD1 CD2 REMARK 470 SER D 3 OG REMARK 470 LYS D 17 NZ REMARK 470 LYS D 19 CG CD CE NZ REMARK 470 LYS D 20 CD CE NZ REMARK 470 LYS D 22 CE NZ REMARK 470 LYS D 30 NZ REMARK 470 SER D 34 OG REMARK 470 LEU D 58 CA C O CB CG CD1 CD2 REMARK 470 ALA E 2 CB REMARK 470 SER E 3 OG REMARK 470 LYS E 17 NZ REMARK 470 LYS E 19 CE NZ REMARK 470 LYS E 20 CD CE NZ REMARK 470 LYS E 22 NZ REMARK 470 LYS E 30 NZ REMARK 470 LEU E 46 CD1 CD2 REMARK 470 GLU E 54 CD OE1 OE2 REMARK 470 LEU E 58 CA C O CB CG CD1 CD2 REMARK 470 ARG F 11 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 17 NZ REMARK 470 LYS F 19 CG CD CE NZ REMARK 470 LYS F 20 CG CD CE NZ REMARK 470 LYS F 22 NZ REMARK 470 LYS F 30 NZ REMARK 470 GLU F 54 CD OE1 OE2 REMARK 470 LEU F 58 CA C O CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 -70.52 -131.88 REMARK 500 ASN B 18 -157.91 -112.90 REMARK 500 LYS B 20 42.70 -102.47 REMARK 500 ASN C 18 -169.73 -79.96 REMARK 500 CYS C 48 34.20 -99.12 REMARK 500 ASN F 18 -175.56 -63.32 REMARK 500 ASN F 56 -71.91 -75.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA D 2 SER D 3 -140.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 7SLW A 2 62 UNP Q8N8U2 CDYL2_HUMAN 2 62 DBREF 7SLW G 1000 1005 PDB 7SLW 7SLW 1000 1005 DBREF 7SLW B 2 62 UNP Q8N8U2 CDYL2_HUMAN 2 62 DBREF 7SLW H 1000 1005 PDB 7SLW 7SLW 1000 1005 DBREF 7SLW C 2 62 UNP Q8N8U2 CDYL2_HUMAN 2 62 DBREF 7SLW I 1000 1005 PDB 7SLW 7SLW 1000 1005 DBREF 7SLW D 2 62 UNP Q8N8U2 CDYL2_HUMAN 2 62 DBREF 7SLW J 1000 1005 PDB 7SLW 7SLW 1000 1005 DBREF 7SLW E 2 62 UNP Q8N8U2 CDYL2_HUMAN 2 62 DBREF 7SLW K 1000 1005 PDB 7SLW 7SLW 1000 1005 DBREF 7SLW F 2 62 UNP Q8N8U2 CDYL2_HUMAN 2 62 DBREF 7SLW L 1000 1005 PDB 7SLW 7SLW 1000 1005 SEQADV 7SLW GLY A 1 UNP Q8N8U2 EXPRESSION TAG SEQADV 7SLW GLY B 1 UNP Q8N8U2 EXPRESSION TAG SEQADV 7SLW GLY C 1 UNP Q8N8U2 EXPRESSION TAG SEQADV 7SLW GLY D 1 UNP Q8N8U2 EXPRESSION TAG SEQADV 7SLW GLY E 1 UNP Q8N8U2 EXPRESSION TAG SEQADV 7SLW GLY F 1 UNP Q8N8U2 EXPRESSION TAG SEQRES 1 A 62 GLY ALA SER GLY ASP LEU TYR GLU VAL GLU ARG ILE VAL SEQRES 2 A 62 ASP LYS ARG LYS ASN LYS LYS GLY LYS TRP GLU TYR LEU SEQRES 3 A 62 ILE ARG TRP LYS GLY TYR GLY SER THR GLU ASP THR TRP SEQRES 4 A 62 GLU PRO GLU HIS HIS LEU LEU HIS CYS GLU GLU PHE ILE SEQRES 5 A 62 ASP GLU PHE ASN GLY LEU HIS MET SER LYS SEQRES 1 G 6 5R0 PHE ALA LEU 9RI SER SEQRES 1 B 62 GLY ALA SER GLY ASP LEU TYR GLU VAL GLU ARG ILE VAL SEQRES 2 B 62 ASP LYS ARG LYS ASN LYS LYS GLY LYS TRP GLU TYR LEU SEQRES 3 B 62 ILE ARG TRP LYS GLY TYR GLY SER THR GLU ASP THR TRP SEQRES 4 B 62 GLU PRO GLU HIS HIS LEU LEU HIS CYS GLU GLU PHE ILE SEQRES 5 B 62 ASP GLU PHE ASN GLY LEU HIS MET SER LYS SEQRES 1 H 6 5R0 PHE ALA LEU 9RI SER SEQRES 1 C 62 GLY ALA SER GLY ASP LEU TYR GLU VAL GLU ARG ILE VAL SEQRES 2 C 62 ASP LYS ARG LYS ASN LYS LYS GLY LYS TRP GLU TYR LEU SEQRES 3 C 62 ILE ARG TRP LYS GLY TYR GLY SER THR GLU ASP THR TRP SEQRES 4 C 62 GLU PRO GLU HIS HIS LEU LEU HIS CYS GLU GLU PHE ILE SEQRES 5 C 62 ASP GLU PHE ASN GLY LEU HIS MET SER LYS SEQRES 1 I 6 5R0 PHE ALA LEU 9RI SER SEQRES 1 D 62 GLY ALA SER GLY ASP LEU TYR GLU VAL GLU ARG ILE VAL SEQRES 2 D 62 ASP LYS ARG LYS ASN LYS LYS GLY LYS TRP GLU TYR LEU SEQRES 3 D 62 ILE ARG TRP LYS GLY TYR GLY SER THR GLU ASP THR TRP SEQRES 4 D 62 GLU PRO GLU HIS HIS LEU LEU HIS CYS GLU GLU PHE ILE SEQRES 5 D 62 ASP GLU PHE ASN GLY LEU HIS MET SER LYS SEQRES 1 J 6 5R0 PHE ALA LEU 9RI SER SEQRES 1 E 62 GLY ALA SER GLY ASP LEU TYR GLU VAL GLU ARG ILE VAL SEQRES 2 E 62 ASP LYS ARG LYS ASN LYS LYS GLY LYS TRP GLU TYR LEU SEQRES 3 E 62 ILE ARG TRP LYS GLY TYR GLY SER THR GLU ASP THR TRP SEQRES 4 E 62 GLU PRO GLU HIS HIS LEU LEU HIS CYS GLU GLU PHE ILE SEQRES 5 E 62 ASP GLU PHE ASN GLY LEU HIS MET SER LYS SEQRES 1 K 6 5R0 PHE ALA LEU 9RI SER SEQRES 1 F 62 GLY ALA SER GLY ASP LEU TYR GLU VAL GLU ARG ILE VAL SEQRES 2 F 62 ASP LYS ARG LYS ASN LYS LYS GLY LYS TRP GLU TYR LEU SEQRES 3 F 62 ILE ARG TRP LYS GLY TYR GLY SER THR GLU ASP THR TRP SEQRES 4 F 62 GLU PRO GLU HIS HIS LEU LEU HIS CYS GLU GLU PHE ILE SEQRES 5 F 62 ASP GLU PHE ASN GLY LEU HIS MET SER LYS SEQRES 1 L 6 5R0 PHE ALA LEU 9RI SER HET 5R0 G1000 12 HET 9RI G1004 17 HET 5R0 H1000 12 HET 9RI H1004 17 HET 5R0 I1000 12 HET 9RI I1004 17 HET 5R0 J1000 12 HET 9RI J1004 17 HET 5R0 K1000 12 HET 9RI K1004 17 HET 5R0 L1000 12 HET 9RI L1004 17 HET GOL A1101 6 HET UNX C 101 1 HET UNX E1001 1 HET UNX E1002 1 HETNAM 5R0 4-~{TERT}-BUTYLBENZOIC ACID HETNAM 9RI (2S)-2-AMINO-6-{[(1S,2S,4R)-BICYCLO[2.2.1]HEPTAN-2- HETNAM 2 9RI YL](METHYL)AMINO}HEXANAL HETNAM GOL GLYCEROL HETNAM UNX UNKNOWN ATOM OR ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 5R0 6(C11 H14 O2) FORMUL 2 9RI 6(C14 H26 N2 O2) FORMUL 13 GOL C3 H8 O3 FORMUL 14 UNX 3(X) FORMUL 17 HOH *9(H2 O) HELIX 1 AA1 GLY A 33 ASP A 37 5 5 HELIX 2 AA2 HIS A 43 LEU A 45 5 3 HELIX 3 AA3 CYS A 48 GLY A 57 1 10 HELIX 4 AA4 HIS B 43 LEU B 45 5 3 HELIX 5 AA5 CYS B 48 GLY B 57 1 10 HELIX 6 AA6 HIS C 43 LEU C 45 5 3 HELIX 7 AA7 CYS C 48 GLY C 57 1 10 HELIX 8 AA8 GLY D 33 ASP D 37 5 5 HELIX 9 AA9 HIS D 43 LEU D 45 5 3 HELIX 10 AB1 CYS D 48 ASN D 56 1 9 HELIX 11 AB2 GLY E 33 ASP E 37 5 5 HELIX 12 AB3 HIS E 43 LEU E 45 5 3 HELIX 13 AB4 CYS E 48 GLY E 57 1 10 HELIX 14 AB5 GLY F 33 ASP F 37 5 5 HELIX 15 AB6 HIS F 43 LEU F 45 5 3 HELIX 16 AB7 CYS F 48 GLY F 57 1 10 SHEET 1 AA1 2 LEU A 6 TYR A 7 0 SHEET 2 AA1 2 ALA G1002 LEU G1003 -1 O ALA G1002 N TYR A 7 SHEET 1 AA2 3 VAL A 9 LYS A 17 0 SHEET 2 AA2 3 TRP A 23 TRP A 29 -1 O ARG A 28 N GLU A 10 SHEET 3 AA2 3 THR A 38 PRO A 41 -1 O THR A 38 N ILE A 27 SHEET 1 AA3 2 LEU B 6 TYR B 7 0 SHEET 2 AA3 2 ALA H1002 LEU H1003 -1 O ALA H1002 N TYR B 7 SHEET 1 AA4 3 VAL B 9 LYS B 17 0 SHEET 2 AA4 3 TRP B 23 TRP B 29 -1 O ARG B 28 N GLU B 10 SHEET 3 AA4 3 THR B 38 PRO B 41 -1 O THR B 38 N ILE B 27 SHEET 1 AA5 2 LEU C 6 TYR C 7 0 SHEET 2 AA5 2 ALA I1002 LEU I1003 -1 O ALA I1002 N TYR C 7 SHEET 1 AA6 3 VAL C 9 LYS C 17 0 SHEET 2 AA6 3 TRP C 23 TRP C 29 -1 O ARG C 28 N GLU C 10 SHEET 3 AA6 3 THR C 38 PRO C 41 -1 O GLU C 40 N TYR C 25 SHEET 1 AA7 2 LEU D 6 TYR D 7 0 SHEET 2 AA7 2 ALA J1002 LEU J1003 -1 O ALA J1002 N TYR D 7 SHEET 1 AA8 3 VAL D 9 LYS D 17 0 SHEET 2 AA8 3 TRP D 23 TRP D 29 -1 O ARG D 28 N GLU D 10 SHEET 3 AA8 3 THR D 38 PRO D 41 -1 O GLU D 40 N TYR D 25 SHEET 1 AA9 2 LEU E 6 TYR E 7 0 SHEET 2 AA9 2 ALA K1002 LEU K1003 -1 O ALA K1002 N TYR E 7 SHEET 1 AB1 3 VAL E 9 LYS E 17 0 SHEET 2 AB1 3 TRP E 23 TRP E 29 -1 O GLU E 24 N ARG E 16 SHEET 3 AB1 3 THR E 38 PRO E 41 -1 O THR E 38 N ILE E 27 SHEET 1 AB2 2 LEU F 6 TYR F 7 0 SHEET 2 AB2 2 ALA L1002 LEU L1003 -1 O ALA L1002 N TYR F 7 SHEET 1 AB3 3 VAL F 9 LYS F 17 0 SHEET 2 AB3 3 TRP F 23 TRP F 29 -1 O LEU F 26 N ASP F 14 SHEET 3 AB3 3 THR F 38 PRO F 41 -1 O GLU F 40 N TYR F 25 LINK C1 5R0 G1000 N PHE G1001 1555 1555 1.33 LINK C LEU G1003 N 9RI G1004 1555 1555 1.32 LINK C 9RI G1004 N SER G1005 1555 1555 1.34 LINK C1 5R0 H1000 N PHE H1001 1555 1555 1.31 LINK C LEU H1003 N 9RI H1004 1555 1555 1.32 LINK C 9RI H1004 N SER H1005 1555 1555 1.34 LINK C1 5R0 I1000 N PHE I1001 1555 1555 1.32 LINK C LEU I1003 N 9RI I1004 1555 1555 1.33 LINK C 9RI I1004 N SER I1005 1555 1555 1.34 LINK C1 5R0 J1000 N PHE J1001 1555 1555 1.36 LINK C LEU J1003 N 9RI J1004 1555 1555 1.33 LINK C 9RI J1004 N SER J1005 1555 1555 1.34 LINK C1 5R0 K1000 N PHE K1001 1555 1555 1.35 LINK C LEU K1003 N 9RI K1004 1555 1555 1.32 LINK C 9RI K1004 N SER K1005 1555 1555 1.34 LINK C1 5R0 L1000 N PHE L1001 1555 1555 1.36 LINK C LEU L1003 N 9RI L1004 1555 1555 1.33 LINK C 9RI L1004 N SER L1005 1555 1555 1.34 CRYST1 44.953 81.265 122.741 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008147 0.00000