HEADER DNA 25-OCT-21 7SMB TITLE [U:AG+/AG+:U--PH 11] METAL-MEDIATED DNA BASE PAIR IN TENSEGRITY TITLE 2 TRIANGLE IN AG+ AND HG2+ SOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*GP*CP*T)-3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SELF-ASSEMBLING CRYSTAL, METAL-MEDIATED KEYWDS 2 MISMATCH, DNA EXPDTA X-RAY DIFFRACTION AUTHOR B.LU,S.VECCHIONI,N.C.SEEMAN,R.SHA,Y.P.OHAYON REVDAT 3 30-AUG-23 7SMB 1 JRNL REVDAT 2 09-AUG-23 7SMB 1 JRNL REVDAT 1 23-NOV-22 7SMB 0 JRNL AUTH B.LU,Y.P.OHAYON,K.WOLOSZYN,C.F.YANG,J.B.YODER, JRNL AUTH 2 L.J.ROTHSCHILD,S.J.WIND,W.A.HENDRICKSON,C.MAO,N.C.SEEMAN, JRNL AUTH 3 J.W.CANARY,R.SHA,S.VECCHIONI JRNL TITL HETEROBIMETALLIC BASE PAIR PROGRAMMING IN DESIGNER 3D DNA JRNL TITL 2 CRYSTALS. JRNL REF J.AM.CHEM.SOC. V. 145 17945 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 37530628 JRNL DOI 10.1021/JACS.3C05478 REMARK 2 REMARK 2 RESOLUTION. 4.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.9 REMARK 3 NUMBER OF REFLECTIONS : 1358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.270 REMARK 3 FREE R VALUE TEST SET COUNT : 58 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.5400 - 4.6300 0.66 1300 58 0.2470 0.2839 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.964 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 259.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 359.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 956 REMARK 3 ANGLE : 1.135 1467 REMARK 3 CHIRALITY : 0.059 165 REMARK 3 PLANARITY : 0.005 42 REMARK 3 DIHEDRAL : 39.581 399 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.549 14.544 -4.517 REMARK 3 T TENSOR REMARK 3 T11: 2.3369 T22: 2.5946 REMARK 3 T33: 2.4971 T12: 0.4636 REMARK 3 T13: 0.3185 T23: 0.2211 REMARK 3 L TENSOR REMARK 3 L11: 1.9937 L22: 5.4595 REMARK 3 L33: -5.8972 L12: 7.1684 REMARK 3 L13: -4.3883 L23: 0.0628 REMARK 3 S TENSOR REMARK 3 S11: 0.8505 S12: -3.4238 S13: 2.8058 REMARK 3 S21: -1.7096 S22: 0.8362 S23: -0.0254 REMARK 3 S31: -0.2976 S32: 2.1229 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.708 12.310 -5.869 REMARK 3 T TENSOR REMARK 3 T11: 2.2849 T22: 1.0360 REMARK 3 T33: 2.2884 T12: -1.4593 REMARK 3 T13: 0.2001 T23: 0.2001 REMARK 3 L TENSOR REMARK 3 L11: -0.1330 L22: -0.2702 REMARK 3 L33: -1.5747 L12: 0.2829 REMARK 3 L13: 0.0814 L23: -1.5893 REMARK 3 S TENSOR REMARK 3 S11: -0.1157 S12: 3.3915 S13: -1.5643 REMARK 3 S21: -8.9388 S22: 6.1590 S23: -7.2056 REMARK 3 S31: -5.3032 S32: 0.0048 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND RESID 8:14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.444 24.681 7.148 REMARK 3 T TENSOR REMARK 3 T11: 2.8473 T22: 3.4293 REMARK 3 T33: 5.2276 T12: 0.5596 REMARK 3 T13: 0.9425 T23: 0.1523 REMARK 3 L TENSOR REMARK 3 L11: -0.5139 L22: -0.1020 REMARK 3 L33: 0.4877 L12: 0.5569 REMARK 3 L13: -0.5316 L23: 0.5727 REMARK 3 S TENSOR REMARK 3 S11: 2.3745 S12: -3.5659 S13: 1.4305 REMARK 3 S21: 0.8193 S22: 0.7711 S23: -6.3302 REMARK 3 S31: 1.2487 S32: -0.6095 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.492 1.343 -19.442 REMARK 3 T TENSOR REMARK 3 T11: 1.7579 T22: 4.6358 REMARK 3 T33: -1.0320 T12: 0.8007 REMARK 3 T13: -0.4725 T23: -2.3342 REMARK 3 L TENSOR REMARK 3 L11: 0.1084 L22: 0.4158 REMARK 3 L33: 0.3414 L12: 0.6410 REMARK 3 L13: 0.3298 L23: 0.5532 REMARK 3 S TENSOR REMARK 3 S11: 7.7369 S12: 0.1443 S13: -5.9375 REMARK 3 S21: -4.5728 S22: -7.2510 S23: -6.4928 REMARK 3 S31: 6.7425 S32: 8.5250 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 11 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00743 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1427 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.630 REMARK 200 RESOLUTION RANGE LOW (A) : 64.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 5.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 83.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, MAGNESIUM SULFATE, SILVER REMARK 280 NITRATE, MERCURY CHLORIDE, PH 11, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.37200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.81434 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.75667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 53.37200 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.81434 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.75667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 53.37200 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.81434 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.75667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.62868 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.51333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.62868 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.51333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.62868 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.51333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DU A 12 C5' DU A 12 C4' -0.069 REMARK 500 DU A 12 C4' DU A 12 C3' 0.072 REMARK 500 DU A 12 C3' DU A 12 C2' -0.293 REMARK 500 DU A 12 C2' DU A 12 C1' 0.106 REMARK 500 DU A 12 O4' DU A 12 C1' -0.105 REMARK 500 DU A 12 O3' DU A 12 C3' 0.097 REMARK 500 DU A 12 N1 DU A 12 C2 0.105 REMARK 500 DU A 12 N1 DU A 12 C6 0.076 REMARK 500 DU A 12 C2 DU A 12 N3 0.120 REMARK 500 DU A 12 N3 DU A 12 C4 0.069 REMARK 500 DU A 12 C4 DU A 12 C5 0.058 REMARK 500 DU A 12 C5 DU A 12 C6 0.159 REMARK 500 DU B 4 C5' DU B 4 C4' -0.088 REMARK 500 DU B 4 C4' DU B 4 C3' 0.066 REMARK 500 DU B 4 C3' DU B 4 C2' -0.291 REMARK 500 DU B 4 C2' DU B 4 C1' 0.107 REMARK 500 DU B 4 O4' DU B 4 C1' -0.108 REMARK 500 DU B 4 O3' DU B 4 C3' 0.096 REMARK 500 DU B 4 C4 DU B 4 O4 -0.049 REMARK 500 DU B 4 N1 DU B 4 C2 0.111 REMARK 500 DU B 4 N1 DU B 4 C6 0.079 REMARK 500 DU B 4 C2 DU B 4 N3 0.116 REMARK 500 DU B 4 N3 DU B 4 C4 0.074 REMARK 500 DU B 4 C4 DU B 4 C5 0.062 REMARK 500 DU B 4 C5 DU B 4 C6 0.158 REMARK 500 DC D 1 P DC D 1 OP3 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 2 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT A 11 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DU A 12 C5' - C4' - O4' ANGL. DEV. = 10.0 DEGREES REMARK 500 DU A 12 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 DU A 12 C6 - N1 - C2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DU A 12 N1 - C2 - N3 ANGL. DEV. = 7.0 DEGREES REMARK 500 DU A 12 C2 - N3 - C4 ANGL. DEV. = -6.4 DEGREES REMARK 500 DU A 12 N3 - C4 - C5 ANGL. DEV. = 3.8 DEGREES REMARK 500 DU A 12 C5 - C4 - O4 ANGL. DEV. = -4.9 DEGREES REMARK 500 DU B 4 OP1 - P - OP2 ANGL. DEV. = -10.9 DEGREES REMARK 500 DU B 4 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DU B 4 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DU B 4 N1 - C2 - N3 ANGL. DEV. = 5.8 DEGREES REMARK 500 DU B 4 C2 - N3 - C4 ANGL. DEV. = -7.1 DEGREES REMARK 500 DU B 4 N3 - C4 - C5 ANGL. DEV. = 5.5 DEGREES REMARK 500 DU B 4 C5 - C4 - O4 ANGL. DEV. = -6.0 DEGREES REMARK 500 DA B 7 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 102 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DU A 12 N3 REMARK 620 2 DU B 4 O2 168.9 REMARK 620 3 DU B 4 N3 132.8 57.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA B 3 N6 REMARK 620 2 DU B 4 O4 97.0 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SD8 RELATED DB: PDB REMARK 900 SAME SEQUENCE, 7SD8 CRYSTALLIZED WITH MERCURY ONLY REMARK 900 RELATED ID: 7SM6 RELATED DB: PDB REMARK 900 SAME SEQUENCE, DIFFERENT PH DBREF 7SMB A 1 21 PDB 7SMB 7SMB 1 21 DBREF 7SMB B 1 7 PDB 7SMB 7SMB 1 7 DBREF 7SMB C 8 14 PDB 7SMB 7SMB 8 14 DBREF 7SMB D 1 7 PDB 7SMB 7SMB 1 7 SEQRES 1 A 21 DG DA DG DC DA DG DC DC DT DG DT DU DT SEQRES 2 A 21 DG DG DA DC DA DT DC DA SEQRES 1 B 7 DC DC DA DU DA DC DA SEQRES 1 C 7 DG DG DC DT DG DC DT SEQRES 1 D 7 DC DT DG DA DT DG DT HET AG B 101 1 HET AG B 102 1 HETNAM AG SILVER ION FORMUL 5 AG 2(AG 1+) LINK N3 DU A 12 AG AG B 102 1555 1555 2.69 LINK N6 DA B 3 AG AG B 101 1555 1555 2.59 LINK O4 DU B 4 AG AG B 101 1555 1555 2.45 LINK O2 DU B 4 AG AG B 102 1555 1555 2.27 LINK N3 DU B 4 AG AG B 102 1555 1555 2.53 CRYST1 106.744 106.744 89.270 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009368 0.005409 0.000000 0.00000 SCALE2 0.000000 0.010817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011202 0.00000