HEADER CELL CYCLE 25-OCT-21 7SMC TITLE P107 POCKET DOMAIN COMPLEXED WITH ARID4A PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOBLASTOMA-LIKE PROTEIN 1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 391-601,780-887,924-972; COMPND 5 SYNONYM: 107 KDA RETINOBLASTOMA-ASSOCIATED PROTEIN,P107,PRB1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4A; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: UNP RESIDUES 953-967; COMPND 11 SYNONYM: ARID DOMAIN-CONTAINING PROTEIN 4A,RETINOBLASTOMA-BINDING COMPND 12 PROTEIN 1,RBBP-1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, CYCLIN BOX POCKET TRANSCRIPTIONAL REGULATOR, CELL KEYWDS 2 CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR S.PUTTA,S.M.FERNANDEZ,S.M.TRIPATHI,G.A.MULLER,S.M.RUBIN REVDAT 3 18-OCT-23 7SMC 1 REMARK REVDAT 2 14-SEP-22 7SMC 1 JRNL REVDAT 1 29-JUN-22 7SMC 0 JRNL AUTH S.PUTTA,L.ALVAREZ,S.LUDTKE,P.SEHR,G.A.MULLER,S.M.FERNANDEZ, JRNL AUTH 2 S.TRIPATHI,J.LEWIS,T.J.GIBSON,L.B.CHEMES,S.M.RUBIN JRNL TITL STRUCTURAL BASIS FOR TUNABLE AFFINITY AND SPECIFICITY OF JRNL TITL 2 LXCXE-DEPENDENT PROTEIN INTERACTIONS WITH THE RETINOBLASTOMA JRNL TITL 3 PROTEIN FAMILY. JRNL REF STRUCTURE V. 30 1340 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 35716663 JRNL DOI 10.1016/J.STR.2022.05.019 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 26567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1100 - 5.6100 0.99 2829 120 0.2247 0.2740 REMARK 3 2 5.6100 - 4.4600 1.00 2813 129 0.2093 0.2672 REMARK 3 3 4.4600 - 3.8900 1.00 2814 163 0.2070 0.2479 REMARK 3 4 3.8900 - 3.5400 0.99 2817 138 0.2209 0.3051 REMARK 3 5 3.5400 - 3.2800 1.00 2822 137 0.2584 0.3300 REMARK 3 6 3.2800 - 3.0900 1.00 2872 120 0.2661 0.3088 REMARK 3 7 3.0900 - 2.9400 1.00 2786 161 0.2823 0.3487 REMARK 3 8 2.9400 - 2.8100 0.99 2812 164 0.2912 0.3689 REMARK 3 9 2.8100 - 2.7000 0.97 2718 152 0.3013 0.3452 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5843 REMARK 3 ANGLE : 1.854 7911 REMARK 3 CHIRALITY : 0.088 905 REMARK 3 PLANARITY : 0.015 994 REMARK 3 DIHEDRAL : 10.670 761 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 389:494 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.153 -4.707 -5.620 REMARK 3 T TENSOR REMARK 3 T11: 0.1431 T22: 0.2289 REMARK 3 T33: 0.2202 T12: -0.0044 REMARK 3 T13: -0.0626 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.0170 L22: 3.4276 REMARK 3 L33: 1.8435 L12: -0.1352 REMARK 3 L13: -0.4973 L23: 0.9344 REMARK 3 S TENSOR REMARK 3 S11: -0.0957 S12: 0.0163 S13: -0.1863 REMARK 3 S21: -0.2654 S22: 0.1517 S23: 0.2843 REMARK 3 S31: 0.0533 S32: 0.1330 S33: -0.0388 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 495:786 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.222 -5.550 7.235 REMARK 3 T TENSOR REMARK 3 T11: 0.1599 T22: 0.1861 REMARK 3 T33: 0.2423 T12: 0.0263 REMARK 3 T13: 0.0248 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 2.3154 L22: 2.5001 REMARK 3 L33: 1.0456 L12: 0.9622 REMARK 3 L13: 0.6420 L23: 0.5983 REMARK 3 S TENSOR REMARK 3 S11: 0.1086 S12: -0.0375 S13: -0.0973 REMARK 3 S21: 0.0296 S22: -0.1430 S23: -0.0666 REMARK 3 S31: 0.0363 S32: -0.0244 S33: 0.0383 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 787:880 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.006 -10.284 26.402 REMARK 3 T TENSOR REMARK 3 T11: 0.3522 T22: 0.3802 REMARK 3 T33: 0.3514 T12: -0.0548 REMARK 3 T13: -0.0251 T23: 0.1135 REMARK 3 L TENSOR REMARK 3 L11: 1.8745 L22: 3.1505 REMARK 3 L33: 3.1574 L12: -0.9108 REMARK 3 L13: 0.4356 L23: -0.9714 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: -0.3320 S13: -0.2371 REMARK 3 S21: 0.5294 S22: -0.1233 S23: -0.1427 REMARK 3 S31: 0.1920 S32: 0.1583 S33: 0.0838 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 881:968 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.368 -8.327 25.768 REMARK 3 T TENSOR REMARK 3 T11: 0.3292 T22: 0.4122 REMARK 3 T33: 0.3911 T12: -0.0688 REMARK 3 T13: -0.0961 T23: 0.1697 REMARK 3 L TENSOR REMARK 3 L11: 4.3860 L22: 5.0295 REMARK 3 L33: 4.0341 L12: -0.1822 REMARK 3 L13: 0.4594 L23: 0.3814 REMARK 3 S TENSOR REMARK 3 S11: 0.1180 S12: -0.4927 S13: 0.0386 REMARK 3 S21: 0.4305 S22: -0.2544 S23: -0.5831 REMARK 3 S31: -0.1787 S32: 0.7026 S33: 0.1374 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 957:967 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.579 -22.378 29.332 REMARK 3 T TENSOR REMARK 3 T11: 0.5376 T22: 0.4824 REMARK 3 T33: 0.4789 T12: 0.0260 REMARK 3 T13: -0.1714 T23: 0.1295 REMARK 3 L TENSOR REMARK 3 L11: 3.3890 L22: 1.8478 REMARK 3 L33: 4.8347 L12: -2.1536 REMARK 3 L13: -2.0298 L23: 1.4836 REMARK 3 S TENSOR REMARK 3 S11: 0.0557 S12: 0.2235 S13: -0.5212 REMARK 3 S21: 0.7867 S22: -0.7259 S23: -0.9863 REMARK 3 S31: 0.3794 S32: 0.6261 S33: 0.4779 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN C AND RESID 389:453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.101 17.813 7.184 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1742 REMARK 3 T33: 0.2734 T12: -0.0554 REMARK 3 T13: -0.0231 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 3.1550 L22: 2.1974 REMARK 3 L33: 1.5973 L12: 0.4974 REMARK 3 L13: 0.2034 L23: -0.6490 REMARK 3 S TENSOR REMARK 3 S11: -0.1580 S12: -0.3019 S13: 0.2148 REMARK 3 S21: 0.1934 S22: 0.1827 S23: -0.2745 REMARK 3 S31: 0.1137 S32: 0.1104 S33: -0.0243 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN C AND RESID 454:581 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.238 13.989 -3.307 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: 0.1486 REMARK 3 T33: 0.2400 T12: 0.0003 REMARK 3 T13: 0.0237 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 1.4453 L22: 1.1150 REMARK 3 L33: 0.8685 L12: 0.5644 REMARK 3 L13: 0.6813 L23: 0.6384 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.0574 S13: 0.0712 REMARK 3 S21: 0.0417 S22: 0.0463 S23: 0.0149 REMARK 3 S31: -0.0225 S32: 0.0302 S33: -0.0274 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN C AND RESID 582:829 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.902 5.318 -26.470 REMARK 3 T TENSOR REMARK 3 T11: 0.4420 T22: 0.2956 REMARK 3 T33: 0.2953 T12: -0.0957 REMARK 3 T13: 0.0759 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.7917 L22: 2.0276 REMARK 3 L33: 4.5183 L12: -0.0613 REMARK 3 L13: -0.2823 L23: -0.0046 REMARK 3 S TENSOR REMARK 3 S11: -0.3175 S12: 0.4993 S13: 0.0039 REMARK 3 S21: -0.9091 S22: -0.0563 S23: -0.2145 REMARK 3 S31: 0.1077 S32: -0.1278 S33: 0.2884 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN C AND RESID 830:971 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.486 -7.021 -25.691 REMARK 3 T TENSOR REMARK 3 T11: 0.6124 T22: 0.4003 REMARK 3 T33: 0.4912 T12: -0.0112 REMARK 3 T13: 0.2032 T23: -0.0654 REMARK 3 L TENSOR REMARK 3 L11: 2.9180 L22: 3.1655 REMARK 3 L33: 2.7558 L12: -1.0388 REMARK 3 L13: -0.4266 L23: 0.5049 REMARK 3 S TENSOR REMARK 3 S11: -0.3864 S12: 0.4568 S13: -0.3727 REMARK 3 S21: -0.8555 S22: 0.1648 S23: -0.5376 REMARK 3 S31: 0.6988 S32: 0.3208 S33: 0.2024 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN D AND RESID 956:962 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.298 -19.166 -30.504 REMARK 3 T TENSOR REMARK 3 T11: 1.1591 T22: 0.5333 REMARK 3 T33: 1.1196 T12: 0.2490 REMARK 3 T13: 0.4217 T23: 0.0837 REMARK 3 L TENSOR REMARK 3 L11: 0.4061 L22: 5.9800 REMARK 3 L33: 2.5152 L12: -1.5147 REMARK 3 L13: 0.9092 L23: -3.7660 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: -0.0500 S13: -0.7241 REMARK 3 S21: -0.8149 S22: -0.3097 S23: -0.2885 REMARK 3 S31: 0.2582 S32: 0.2110 S33: 0.2326 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4YOS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH 6.5, 4% PEG400, 1.6 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 388 REMARK 465 PRO A 772 REMARK 465 ASN A 773 REMARK 465 ASN A 774 REMARK 465 PHE A 775 REMARK 465 GLU A 776 REMARK 465 THR A 777 REMARK 465 GLY A 778 REMARK 465 ASN A 779 REMARK 465 ASN A 780 REMARK 465 ARG A 781 REMARK 465 PRO A 782 REMARK 465 LYS A 783 REMARK 465 ARG A 784 REMARK 465 ILE A 923 REMARK 465 LYS A 924 REMARK 465 LEU A 951 REMARK 465 ALA A 952 REMARK 465 ASN A 953 REMARK 465 GLN A 954 REMARK 465 ASP A 955 REMARK 465 HIS A 956 REMARK 465 MET A 957 REMARK 465 MET A 958 REMARK 465 ASP A 959 REMARK 465 ALA A 960 REMARK 465 PRO A 961 REMARK 465 ILE A 969 REMARK 465 LYS A 970 REMARK 465 GLN A 971 REMARK 465 GLN A 972 REMARK 465 GLY B 953 REMARK 465 PRO B 954 REMARK 465 GLU B 955 REMARK 465 THR B 956 REMARK 465 GLY C 388 REMARK 465 GLU C 776 REMARK 465 THR C 777 REMARK 465 GLY C 778 REMARK 465 ASN C 779 REMARK 465 ASN C 780 REMARK 465 ARG C 781 REMARK 465 PRO C 782 REMARK 465 LYS C 783 REMARK 465 ARG C 784 REMARK 465 ILE C 923 REMARK 465 LYS C 924 REMARK 465 LEU C 951 REMARK 465 ALA C 952 REMARK 465 ASN C 953 REMARK 465 GLN C 954 REMARK 465 ASP C 955 REMARK 465 HIS C 956 REMARK 465 MET C 957 REMARK 465 MET C 958 REMARK 465 ASP C 959 REMARK 465 ALA C 960 REMARK 465 PRO C 961 REMARK 465 GLN C 972 REMARK 465 GLY D 953 REMARK 465 PRO D 954 REMARK 465 GLU D 955 REMARK 465 ASP D 963 REMARK 465 LEU D 964 REMARK 465 ASP D 965 REMARK 465 ASP D 966 REMARK 465 LEU D 967 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 405 CG CD CE NZ REMARK 470 LYS A 462 CG CD CE NZ REMARK 470 ARG A 549 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 809 CG CD CE NZ REMARK 470 LYS A 856 CG CD CE NZ REMARK 470 LYS A 885 CG CD CE NZ REMARK 470 SER A 886 OG REMARK 470 LEU A 930 CD1 REMARK 470 LYS C 405 CG CD CE NZ REMARK 470 LYS C 462 CG CD CE NZ REMARK 470 LYS C 809 CG CD CE NZ REMARK 470 ARG C 818 CD NE CZ NH1 NH2 REMARK 470 LYS C 819 CG CD CE NZ REMARK 470 LYS C 856 CG CD CE NZ REMARK 470 GLN C 862 CG CD OE1 NE2 REMARK 470 GLU C 863 CG CD OE1 OE2 REMARK 470 LYS C 885 CG CD CE NZ REMARK 470 SER C 886 OG REMARK 470 LEU C 930 CD1 REMARK 470 LYS C 970 CG CD CE NZ REMARK 470 GLN C 971 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 520 N - CA - CB ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 406 40.83 -87.37 REMARK 500 SER A 452 -151.31 -127.74 REMARK 500 SER A 565 -17.33 -156.48 REMARK 500 GLU A 857 61.74 -114.18 REMARK 500 LEU A 884 -66.40 -102.78 REMARK 500 ASN C 406 42.91 -83.33 REMARK 500 PRO C 520 44.95 -94.90 REMARK 500 SER C 565 -51.89 -159.87 REMARK 500 PHE C 593 70.68 -115.42 REMARK 500 GLU C 857 48.32 -90.72 REMARK 500 LEU C 884 -36.20 -131.58 REMARK 500 ILE C 969 -70.81 -79.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 519 PRO A 520 32.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 7SMC A 391 779 UNP P28749 RBL1_HUMAN 391 601 DBREF 7SMC A 780 923 UNP P28749 RBL1_HUMAN 780 887 DBREF 7SMC A 924 972 UNP P28749 RBL1_HUMAN 924 972 DBREF 7SMC B 953 967 UNP P29374 ARI4A_HUMAN 953 967 DBREF 7SMC C 391 779 UNP P28749 RBL1_HUMAN 391 601 DBREF 7SMC C 780 923 UNP P28749 RBL1_HUMAN 780 887 DBREF 7SMC C 924 972 UNP P28749 RBL1_HUMAN 924 972 DBREF 7SMC D 953 967 UNP P29374 ARI4A_HUMAN 953 967 SEQADV 7SMC GLY A 388 UNP P28749 EXPRESSION TAG SEQADV 7SMC GLU A 389 UNP P28749 EXPRESSION TAG SEQADV 7SMC PHE A 390 UNP P28749 EXPRESSION TAG SEQADV 7SMC GLY C 388 UNP P28749 EXPRESSION TAG SEQADV 7SMC GLU C 389 UNP P28749 EXPRESSION TAG SEQADV 7SMC PHE C 390 UNP P28749 EXPRESSION TAG SEQRES 1 A 371 GLY GLU PHE THR GLN SER VAL SER ARG LEU GLN SER ILE SEQRES 2 A 371 VAL ALA GLY LEU LYS ASN ALA PRO SER ASP GLN LEU ILE SEQRES 3 A 371 ASN ILE PHE GLU SER CYS VAL ARG ASN PRO VAL GLU ASN SEQRES 4 A 371 ILE MET LYS ILE LEU LYS GLY ILE GLY GLU THR PHE CYS SEQRES 5 A 371 GLN HIS TYR THR GLN SER THR ASP GLU GLN PRO GLY SER SEQRES 6 A 371 HIS ILE ASP PHE ALA VAL ASN ARG LEU LYS LEU ALA GLU SEQRES 7 A 371 ILE LEU TYR TYR LYS ILE LEU GLU THR VAL MET VAL GLN SEQRES 8 A 371 GLU THR ARG ARG LEU HIS GLY MET ASP MET SER VAL LEU SEQRES 9 A 371 LEU GLU GLN ASP ILE PHE HIS ARG SER LEU MET ALA CYS SEQRES 10 A 371 CYS LEU GLU ILE VAL LEU PHE ALA TYR SER SER PRO ARG SEQRES 11 A 371 THR PHE PRO TRP ILE ILE GLU VAL LEU ASN LEU GLN PRO SEQRES 12 A 371 PHE TYR PHE TYR LYS VAL ILE GLU VAL VAL ILE ARG SER SEQRES 13 A 371 GLU GLU GLY LEU SER ARG ASP MET VAL LYS HIS LEU ASN SEQRES 14 A 371 SER ILE GLU GLU GLN ILE LEU GLU SER LEU ALA TRP SER SEQRES 15 A 371 HIS ASP SER ALA LEU TRP GLU ALA LEU GLN VAL SER ALA SEQRES 16 A 371 ASN LYS VAL PRO THR CYS GLU GLU VAL ILE PHE PRO ASN SEQRES 17 A 371 ASN PHE GLU THR GLY ASN ASN ARG PRO LYS ARG THR GLY SEQRES 18 A 371 SER LEU ALA LEU PHE TYR ARG LYS VAL TYR HIS LEU ALA SEQRES 19 A 371 SER VAL ARG LEU ARG ASP LEU CYS LEU LYS LEU ASP VAL SEQRES 20 A 371 SER ASN GLU LEU ARG ARG LYS ILE TRP THR CYS PHE GLU SEQRES 21 A 371 PHE THR LEU VAL HIS CYS PRO ASP LEU MET LYS ASP ARG SEQRES 22 A 371 HIS LEU ASP GLN LEU LEU LEU CYS ALA PHE TYR ILE MET SEQRES 23 A 371 ALA LYS VAL THR LYS GLU GLU ARG THR PHE GLN GLU ILE SEQRES 24 A 371 MET LYS SER TYR ARG ASN GLN PRO GLN ALA ASN SER HIS SEQRES 25 A 371 VAL TYR ARG SER VAL LEU LEU LYS SER ILE LYS GLU GLU SEQRES 26 A 371 ARG GLY ASP LEU ILE LYS PHE TYR ASN THR ILE TYR VAL SEQRES 27 A 371 GLY ARG VAL LYS SER PHE ALA LEU LYS TYR ASP LEU ALA SEQRES 28 A 371 ASN GLN ASP HIS MET MET ASP ALA PRO PRO LEU SER PRO SEQRES 29 A 371 PHE PRO HIS ILE LYS GLN GLN SEQRES 1 B 15 GLY PRO GLU THR LEU VAL CYS HIS GLU VAL ASP LEU ASP SEQRES 2 B 15 ASP LEU SEQRES 1 C 371 GLY GLU PHE THR GLN SER VAL SER ARG LEU GLN SER ILE SEQRES 2 C 371 VAL ALA GLY LEU LYS ASN ALA PRO SER ASP GLN LEU ILE SEQRES 3 C 371 ASN ILE PHE GLU SER CYS VAL ARG ASN PRO VAL GLU ASN SEQRES 4 C 371 ILE MET LYS ILE LEU LYS GLY ILE GLY GLU THR PHE CYS SEQRES 5 C 371 GLN HIS TYR THR GLN SER THR ASP GLU GLN PRO GLY SER SEQRES 6 C 371 HIS ILE ASP PHE ALA VAL ASN ARG LEU LYS LEU ALA GLU SEQRES 7 C 371 ILE LEU TYR TYR LYS ILE LEU GLU THR VAL MET VAL GLN SEQRES 8 C 371 GLU THR ARG ARG LEU HIS GLY MET ASP MET SER VAL LEU SEQRES 9 C 371 LEU GLU GLN ASP ILE PHE HIS ARG SER LEU MET ALA CYS SEQRES 10 C 371 CYS LEU GLU ILE VAL LEU PHE ALA TYR SER SER PRO ARG SEQRES 11 C 371 THR PHE PRO TRP ILE ILE GLU VAL LEU ASN LEU GLN PRO SEQRES 12 C 371 PHE TYR PHE TYR LYS VAL ILE GLU VAL VAL ILE ARG SER SEQRES 13 C 371 GLU GLU GLY LEU SER ARG ASP MET VAL LYS HIS LEU ASN SEQRES 14 C 371 SER ILE GLU GLU GLN ILE LEU GLU SER LEU ALA TRP SER SEQRES 15 C 371 HIS ASP SER ALA LEU TRP GLU ALA LEU GLN VAL SER ALA SEQRES 16 C 371 ASN LYS VAL PRO THR CYS GLU GLU VAL ILE PHE PRO ASN SEQRES 17 C 371 ASN PHE GLU THR GLY ASN ASN ARG PRO LYS ARG THR GLY SEQRES 18 C 371 SER LEU ALA LEU PHE TYR ARG LYS VAL TYR HIS LEU ALA SEQRES 19 C 371 SER VAL ARG LEU ARG ASP LEU CYS LEU LYS LEU ASP VAL SEQRES 20 C 371 SER ASN GLU LEU ARG ARG LYS ILE TRP THR CYS PHE GLU SEQRES 21 C 371 PHE THR LEU VAL HIS CYS PRO ASP LEU MET LYS ASP ARG SEQRES 22 C 371 HIS LEU ASP GLN LEU LEU LEU CYS ALA PHE TYR ILE MET SEQRES 23 C 371 ALA LYS VAL THR LYS GLU GLU ARG THR PHE GLN GLU ILE SEQRES 24 C 371 MET LYS SER TYR ARG ASN GLN PRO GLN ALA ASN SER HIS SEQRES 25 C 371 VAL TYR ARG SER VAL LEU LEU LYS SER ILE LYS GLU GLU SEQRES 26 C 371 ARG GLY ASP LEU ILE LYS PHE TYR ASN THR ILE TYR VAL SEQRES 27 C 371 GLY ARG VAL LYS SER PHE ALA LEU LYS TYR ASP LEU ALA SEQRES 28 C 371 ASN GLN ASP HIS MET MET ASP ALA PRO PRO LEU SER PRO SEQRES 29 C 371 PHE PRO HIS ILE LYS GLN GLN SEQRES 1 D 15 GLY PRO GLU THR LEU VAL CYS HIS GLU VAL ASP LEU ASP SEQRES 2 D 15 ASP LEU HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *30(H2 O) HELIX 1 AA1 THR A 391 VAL A 401 1 11 HELIX 2 AA2 SER A 409 SER A 418 1 10 HELIX 3 AA3 PRO A 423 THR A 443 1 21 HELIX 4 AA4 HIS A 453 GLN A 478 1 26 HELIX 5 AA5 GLU A 479 HIS A 484 1 6 HELIX 6 AA6 SER A 489 GLU A 493 5 5 HELIX 7 AA7 GLN A 494 TYR A 513 1 20 HELIX 8 AA8 PRO A 520 LEU A 526 1 7 HELIX 9 AA9 GLN A 529 TYR A 534 1 6 HELIX 10 AB1 TYR A 534 GLU A 544 1 11 HELIX 11 AB2 SER A 548 SER A 565 1 18 HELIX 12 AB3 LEU A 566 SER A 569 5 4 HELIX 13 AB4 ALA A 573 SER A 581 1 9 HELIX 14 AB5 THR A 587 ILE A 592 1 6 HELIX 15 AB6 GLY A 786 LYS A 809 1 24 HELIX 16 AB7 SER A 813 HIS A 830 1 18 HELIX 17 AB8 CYS A 831 LYS A 836 5 6 HELIX 18 AB9 HIS A 839 THR A 855 1 17 HELIX 19 AC1 THR A 860 ARG A 869 1 10 HELIX 20 AC2 SER A 876 SER A 881 1 6 HELIX 21 AC3 ASP A 929 ILE A 937 1 9 HELIX 22 AC4 ILE A 937 LEU A 947 1 11 HELIX 23 AC5 LYS A 948 ASP A 950 5 3 HELIX 24 AC6 THR C 391 VAL C 401 1 11 HELIX 25 AC7 SER C 409 CYS C 419 1 11 HELIX 26 AC8 PRO C 423 THR C 443 1 21 HELIX 27 AC9 HIS C 453 GLN C 478 1 26 HELIX 28 AD1 GLU C 479 HIS C 484 1 6 HELIX 29 AD2 GLN C 494 TYR C 513 1 20 HELIX 30 AD3 PRO C 520 LEU C 526 1 7 HELIX 31 AD4 GLN C 529 TYR C 534 1 6 HELIX 32 AD5 VAL C 536 SER C 543 1 8 HELIX 33 AD6 SER C 548 SER C 565 1 18 HELIX 34 AD7 LEU C 566 SER C 569 5 4 HELIX 35 AD8 ALA C 573 SER C 581 1 9 HELIX 36 AD9 THR C 587 ILE C 592 1 6 HELIX 37 AE1 GLY C 786 LYS C 809 1 24 HELIX 38 AE2 SER C 813 HIS C 830 1 18 HELIX 39 AE3 CYS C 831 LYS C 836 5 6 HELIX 40 AE4 HIS C 839 THR C 855 1 17 HELIX 41 AE5 THR C 860 ASN C 870 1 11 HELIX 42 AE6 SER C 876 SER C 881 1 6 HELIX 43 AE7 ASP C 929 ILE C 937 1 9 HELIX 44 AE8 ILE C 937 LYS C 948 1 12 SHEET 1 AA1 2 VAL A 882 LYS A 885 0 SHEET 2 AA1 2 GLU A 926 GLY A 928 -1 O GLY A 928 N VAL A 882 SHEET 1 AA2 2 VAL C 882 LYS C 885 0 SHEET 2 AA2 2 GLU C 926 GLY C 928 -1 O GLU C 926 N LYS C 885 CISPEP 1 PHE C 519 PRO C 520 0 5.92 CRYST1 62.863 62.923 71.274 69.89 76.00 74.36 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015908 -0.004455 -0.002763 0.00000 SCALE2 0.000000 0.016504 -0.005155 0.00000 SCALE3 0.000000 0.000000 0.015149 0.00000