HEADER LIGASE 27-OCT-21 7SNB TITLE THE X-RAY CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF STAPHYLOCOCCUS TITLE 2 AUREUS FATTY ACID KINASE A (FAKA, RESIDUES 1-208) IN COMPLEX WITH AMP TITLE 3 AND ADP TO 1.105 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID KINASE A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FATTY ACID KINASE A, PHOSPHORYLATION, FATTY ACID, N-TERMINUS DOMAIN, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,C.SUBRAMANIAN,C.O.ROCK,S.W.WHITE REVDAT 3 26-FEB-25 7SNB 1 JRNL REVDAT 2 18-OCT-23 7SNB 1 REMARK REVDAT 1 02-MAR-22 7SNB 0 JRNL AUTH C.SUBRAMANIAN,M.G.CUYPERS,C.D.RADKA,S.W.WHITE,C.O.ROCK JRNL TITL DOMAIN ARCHITECTURE AND CATALYSIS OF THE STAPHYLOCOCCUS JRNL TITL 2 AUREUS FATTY ACID KINASE. JRNL REF J.BIOL.CHEM. V. 298 01993 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35490779 JRNL DOI 10.1016/J.JBC.2022.101993 REMARK 2 REMARK 2 RESOLUTION. 1.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_4302 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.470 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 76069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3600 - 3.3100 0.98 3032 162 0.1561 0.1714 REMARK 3 2 3.3100 - 2.6300 0.99 2921 146 0.1435 0.1518 REMARK 3 3 2.6300 - 2.3000 0.99 2903 132 0.1311 0.1629 REMARK 3 4 2.3000 - 2.0900 0.99 2888 143 0.1261 0.1372 REMARK 3 5 2.0900 - 1.9400 0.99 2843 145 0.1334 0.1462 REMARK 3 6 1.9400 - 1.8200 0.99 2870 162 0.1377 0.1526 REMARK 3 7 1.8200 - 1.7300 0.99 2816 159 0.1380 0.1606 REMARK 3 8 1.7300 - 1.6600 0.99 2810 157 0.1396 0.1506 REMARK 3 9 1.6600 - 1.5900 0.99 2830 165 0.1318 0.1449 REMARK 3 10 1.5900 - 1.5400 0.98 2787 156 0.1384 0.1569 REMARK 3 11 1.5400 - 1.4900 0.97 2780 130 0.1441 0.1678 REMARK 3 12 1.4900 - 1.4500 0.97 2747 154 0.1447 0.1618 REMARK 3 13 1.4500 - 1.4100 0.97 2730 146 0.1554 0.1577 REMARK 3 14 1.4100 - 1.3800 0.95 2708 136 0.1587 0.1816 REMARK 3 15 1.3800 - 1.3400 0.94 2669 144 0.1640 0.1815 REMARK 3 16 1.3400 - 1.3200 0.94 2666 155 0.1695 0.1884 REMARK 3 17 1.3200 - 1.2900 0.92 2589 133 0.1728 0.1982 REMARK 3 18 1.2900 - 1.2600 0.92 2615 139 0.1847 0.2070 REMARK 3 19 1.2600 - 1.2400 0.90 2570 118 0.1883 0.2139 REMARK 3 20 1.2400 - 1.2200 0.90 2560 120 0.1999 0.2019 REMARK 3 21 1.2200 - 1.2000 0.87 2493 113 0.1976 0.2080 REMARK 3 22 1.2000 - 1.1800 0.88 2500 111 0.2119 0.2256 REMARK 3 23 1.1800 - 1.1700 0.86 2466 121 0.2230 0.2168 REMARK 3 24 1.1700 - 1.1500 0.85 2377 150 0.2338 0.2513 REMARK 3 25 1.1500 - 1.1300 0.85 2374 125 0.2469 0.2618 REMARK 3 26 1.1300 - 1.1200 0.84 2398 115 0.2575 0.2593 REMARK 3 27 1.1200 - 1.1100 0.83 2357 133 0.2809 0.2906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.091 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1812 REMARK 3 ANGLE : 1.275 2463 REMARK 3 CHIRALITY : 0.084 281 REMARK 3 PLANARITY : 0.011 319 REMARK 3 DIHEDRAL : 16.047 269 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -14 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4854 27.1001 36.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.5035 REMARK 3 T33: 0.3788 T12: -0.0536 REMARK 3 T13: -0.0747 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.1355 L22: 0.7733 REMARK 3 L33: 0.4303 L12: 0.0527 REMARK 3 L13: 0.2350 L23: 0.2514 REMARK 3 S TENSOR REMARK 3 S11: 0.1283 S12: -0.4184 S13: 0.0605 REMARK 3 S21: 0.1441 S22: -0.0736 S23: -0.5756 REMARK 3 S31: -0.0437 S32: 0.4585 S33: 0.2465 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7244 29.0320 6.1472 REMARK 3 T TENSOR REMARK 3 T11: 0.0722 T22: 0.0887 REMARK 3 T33: 0.0820 T12: 0.0232 REMARK 3 T13: 0.0030 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.5880 L22: 0.3238 REMARK 3 L33: 3.5691 L12: 0.0310 REMARK 3 L13: -0.7342 L23: 0.0872 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: 0.0809 S13: 0.1177 REMARK 3 S21: -0.0023 S22: -0.0061 S23: 0.0214 REMARK 3 S31: -0.2272 S32: -0.1706 S33: -0.0597 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9214 20.2644 17.2982 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.0733 REMARK 3 T33: 0.0773 T12: 0.0021 REMARK 3 T13: 0.0123 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.9587 L22: 1.3337 REMARK 3 L33: 5.4243 L12: 0.1214 REMARK 3 L13: 0.0796 L23: 1.6162 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: -0.0327 S13: 0.0257 REMARK 3 S21: 0.0977 S22: -0.0173 S23: 0.1168 REMARK 3 S31: 0.1881 S32: -0.3342 S33: -0.0778 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6547 14.8678 12.2324 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.0553 REMARK 3 T33: 0.0539 T12: 0.0099 REMARK 3 T13: -0.0013 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.9429 L22: 0.6792 REMARK 3 L33: 2.2933 L12: 0.0081 REMARK 3 L13: -0.2895 L23: 0.3810 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: -0.0629 S13: -0.0267 REMARK 3 S21: 0.0875 S22: 0.0394 S23: -0.0182 REMARK 3 S31: 0.0989 S32: 0.0481 S33: -0.0076 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7619 19.4460 14.9983 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.1673 REMARK 3 T33: 0.0752 T12: 0.0220 REMARK 3 T13: -0.0167 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.5817 L22: 0.9809 REMARK 3 L33: 2.4702 L12: 0.1980 REMARK 3 L13: 1.1917 L23: 0.3002 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: -0.1699 S13: -0.0232 REMARK 3 S21: 0.1287 S22: 0.0474 S23: -0.1507 REMARK 3 S31: 0.1882 S32: 0.2457 S33: -0.0490 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.5409 26.4990 9.8783 REMARK 3 T TENSOR REMARK 3 T11: 0.0690 T22: 0.1063 REMARK 3 T33: 0.0816 T12: -0.0066 REMARK 3 T13: -0.0007 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.7279 L22: 0.3371 REMARK 3 L33: 7.1754 L12: -0.2354 REMARK 3 L13: -1.0568 L23: 1.0418 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: -0.1226 S13: 0.1114 REMARK 3 S21: 0.0025 S22: 0.0496 S23: -0.0285 REMARK 3 S31: -0.1948 S32: 0.3139 S33: -0.0895 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0787 25.4772 -8.1892 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0689 REMARK 3 T33: 0.0611 T12: -0.0055 REMARK 3 T13: -0.0009 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 3.3691 L22: 1.8968 REMARK 3 L33: 3.7489 L12: -1.7456 REMARK 3 L13: 0.8610 L23: -2.1524 REMARK 3 S TENSOR REMARK 3 S11: 0.0912 S12: 0.1154 S13: 0.0925 REMARK 3 S21: -0.0673 S22: -0.1161 S23: -0.0036 REMARK 3 S31: -0.1110 S32: 0.1011 S33: 0.0152 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9436 31.3441 12.7021 REMARK 3 T TENSOR REMARK 3 T11: 0.0893 T22: 0.0784 REMARK 3 T33: 0.0971 T12: -0.0095 REMARK 3 T13: 0.0073 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 1.2105 L22: 2.4704 REMARK 3 L33: 2.9299 L12: -0.0255 REMARK 3 L13: 0.0755 L23: 2.5660 REMARK 3 S TENSOR REMARK 3 S11: 0.0492 S12: -0.0805 S13: 0.2039 REMARK 3 S21: -0.0134 S22: 0.0091 S23: -0.0241 REMARK 3 S31: -0.3411 S32: 0.0721 S33: -0.0846 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000260762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81058 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.105 REMARK 200 RESOLUTION RANGE LOW (A) : 81.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: 7RZK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS HCL PH8.5, REMARK 280 30%PEG4000 (JCSG CORE IV #21), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.36300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.61300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.91300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.61300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.36300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.91300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 GLU A 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -14 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 4 CD CE NZ REMARK 470 LYS A 206 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -9 13.23 -145.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 92 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 681 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 682 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 683 DISTANCE = 6.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 32 OD1 REMARK 620 2 ASP A 38 OD1 84.5 REMARK 620 3 ASP A 40 OD1 89.7 86.8 REMARK 620 4 AMP A 303 O1P 91.6 176.1 92.7 REMARK 620 5 ADP A 304 O3B 175.3 92.3 93.6 91.6 REMARK 620 6 ADP A 304 O1A 81.9 162.6 82.3 14.2 101.8 REMARK 620 7 HOH A 468 O 89.6 87.3 174.1 93.2 86.8 103.4 REMARK 620 8 HOH A 478 O 175.8 91.7 91.8 92.2 1.9 102.2 88.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 38 OD2 REMARK 620 2 ASP A 40 OD2 95.2 REMARK 620 3 ADP A 304 O3B 87.1 95.7 REMARK 620 4 HOH A 423 O 87.4 83.4 174.3 REMARK 620 5 HOH A 478 O 86.8 93.9 1.9 173.3 REMARK 620 6 HOH A 531 O 176.0 88.8 92.7 92.8 93.2 REMARK 620 7 HOH A 541 O 89.0 173.0 90.0 91.3 91.9 86.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 475 O REMARK 620 2 HOH A 657 O 89.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 422 O REMARK 620 2 HOH A 457 O 100.2 REMARK 620 3 HOH A 567 O 95.1 84.8 REMARK 620 4 HOH A 573 O 88.8 170.8 92.7 REMARK 620 5 HOH A 665 O 89.8 93.1 174.9 88.7 REMARK 620 6 HOH A 678 O 166.4 86.0 97.5 85.6 77.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RM7 RELATED DB: PDB DBREF 7SNB A 1 208 UNP Q7A5Z4 Y1069_STAAN 1 208 SEQADV 7SNB MET A -19 UNP Q7A5Z4 INITIATING METHIONINE SEQADV 7SNB GLY A -18 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB SER A -17 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB SER A -16 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB HIS A -15 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB HIS A -14 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB HIS A -13 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB HIS A -12 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB HIS A -11 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB HIS A -10 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB SER A -9 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB SER A -8 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB GLY A -7 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB LEU A -6 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB VAL A -5 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB PRO A -4 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB ARG A -3 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB GLY A -2 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB SER A -1 UNP Q7A5Z4 EXPRESSION TAG SEQADV 7SNB HIS A 0 UNP Q7A5Z4 EXPRESSION TAG SEQRES 1 A 228 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 228 LEU VAL PRO ARG GLY SER HIS MET ILE SER LYS ILE ASN SEQRES 3 A 228 GLY LYS LEU PHE ALA ASP MET ILE ILE GLN GLY ALA GLN SEQRES 4 A 228 ASN LEU SER ASN ASN ALA ASP LEU VAL ASP SER LEU ASN SEQRES 5 A 228 VAL TYR PRO VAL PRO ASP GLY ASP THR GLY THR ASN MET SEQRES 6 A 228 ASN LEU THR MET THR SER GLY ARG GLU GLU VAL GLU ASN SEQRES 7 A 228 ASN LEU SER LYS ASN ILE GLY GLU LEU GLY LYS THR PHE SEQRES 8 A 228 SER LYS GLY LEU LEU MET GLY ALA ARG GLY ASN SER GLY SEQRES 9 A 228 VAL ILE LEU SER GLN LEU PHE ARG GLY PHE CYS LYS ASN SEQRES 10 A 228 ILE GLU SER GLU SER GLU ILE ASN SER LYS LEU LEU ALA SEQRES 11 A 228 GLU SER PHE GLN ALA GLY VAL GLU THR ALA TYR LYS ALA SEQRES 12 A 228 VAL MET LYS PRO VAL GLU GLY THR ILE LEU THR VAL ALA SEQRES 13 A 228 LYS ASP ALA ALA GLN ALA ALA ILE GLU LYS ALA ASN ASN SEQRES 14 A 228 THR GLU ASP CYS ILE GLU LEU MET GLU TYR ILE ILE VAL SEQRES 15 A 228 LYS ALA ASN GLU SER LEU GLU ASN THR PRO ASN LEU LEU SEQRES 16 A 228 ALA VAL LEU LYS GLU VAL GLY VAL VAL ASP SER GLY GLY SEQRES 17 A 228 LYS GLY LEU LEU CYS VAL TYR GLU GLY PHE LEU LYS ALA SEQRES 18 A 228 LEU LYS GLY GLU LYS VAL GLU HET GOL A 301 13 HET GOL A 302 14 HET AMP A 303 34 HET ADP A 304 38 HET MG A 305 1 HET MG A 306 1 HET MG A 307 1 HET MG A 308 1 HETNAM GOL GLYCEROL HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 AMP C10 H14 N5 O7 P FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 MG 4(MG 2+) FORMUL 10 HOH *283(H2 O) HELIX 1 AA1 ASN A 6 ASN A 32 1 27 HELIX 2 AA2 ASP A 40 ASN A 59 1 20 HELIX 3 AA3 ASN A 63 MET A 77 1 15 HELIX 4 AA4 ARG A 80 ILE A 98 1 19 HELIX 5 AA5 ASN A 105 VAL A 124 1 20 HELIX 6 AA6 THR A 131 ASN A 148 1 18 HELIX 7 AA7 ASP A 152 THR A 171 1 20 HELIX 8 AA8 PRO A 172 LEU A 174 5 3 HELIX 9 AA9 LEU A 175 GLY A 182 1 8 HELIX 10 AB1 ASP A 185 LYS A 203 1 19 LINK OD1 ASN A 32 MG MG A 305 1555 1555 2.09 LINK OD1 ASP A 38 MG MG A 305 1555 1555 2.10 LINK OD2 ASP A 38 MG MG A 306 1555 1555 2.10 LINK OD1 ASP A 40 MG MG A 305 1555 1555 2.02 LINK OD2 ASP A 40 MG MG A 306 1555 1555 2.05 LINK O1PAAMP A 303 MG MG A 305 1555 1555 2.04 LINK O3BBADP A 304 MG MG A 305 1555 1555 2.19 LINK O1ABADP A 304 MG MG A 305 1555 1555 1.97 LINK O3BBADP A 304 MG MG A 306 1555 1555 2.13 LINK MG MG A 305 O HOH A 468 1555 1555 2.11 LINK MG MG A 305 O AHOH A 478 1555 1555 2.16 LINK MG MG A 306 O HOH A 423 1555 2664 2.08 LINK MG MG A 306 O AHOH A 478 1555 1555 2.09 LINK MG MG A 306 O HOH A 531 1555 1555 2.08 LINK MG MG A 306 O HOH A 541 1555 1555 2.03 LINK MG MG A 307 O HOH A 475 1555 2764 2.84 LINK MG MG A 307 O HOH A 657 1555 1555 2.15 LINK MG MG A 308 O HOH A 422 1555 1555 2.20 LINK MG MG A 308 O HOH A 457 1555 1555 1.97 LINK MG MG A 308 O HOH A 567 1555 1555 2.44 LINK MG MG A 308 O HOH A 573 1555 1555 2.15 LINK MG MG A 308 O HOH A 665 1555 1555 2.17 LINK MG MG A 308 O HOH A 678 1555 1555 2.03 CISPEP 1 TYR A 34 PRO A 35 0 -0.72 CISPEP 2 TYR A 34 PRO A 35 0 -1.39 CRYST1 42.726 57.826 81.226 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023405 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012311 0.00000