HEADER RNA BINDING PROTEIN/RNA 01-NOV-21 7SOQ TITLE LAM DOMAIN OF HUMAN LARP1 IN COMPLEX WITH AAA RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF LA-RELATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 323-410; COMPND 5 SYNONYM: LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*AP*AP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LARP1, KIAA0731, LARP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS WINGED HELIX FOLD, RNA BINDING DOMAIN, RNA BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING REVDAT 4 18-OCT-23 7SOQ 1 REMARK REVDAT 3 23-NOV-22 7SOQ 1 JRNL REVDAT 2 31-AUG-22 7SOQ 1 JRNL REVDAT 1 03-AUG-22 7SOQ 0 JRNL AUTH G.KOZLOV,S.MATTIJSSEN,J.JIANG,S.NYANDWI,T.SPRULES,J.R.IBEN, JRNL AUTH 2 S.L.COON,S.GAIDAMAKOV,A.M.NORONHA,C.J.WILDS,R.J.MARAIA, JRNL AUTH 3 K.GEHRING JRNL TITL STRUCTURAL BASIS OF 3'-END POLY(A) RNA RECOGNITION BY LARP1. JRNL REF NUCLEIC ACIDS RES. V. 50 9534 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35979957 JRNL DOI 10.1093/NAR/GKAC696 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 35581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5400 - 2.7100 1.00 2832 171 0.1779 0.2002 REMARK 3 2 2.7100 - 2.1500 1.00 2725 170 0.1801 0.1863 REMARK 3 3 2.1500 - 1.8800 1.00 2708 138 0.1696 0.1676 REMARK 3 4 1.8800 - 1.7100 1.00 2709 119 0.1640 0.1727 REMARK 3 5 1.7100 - 1.5800 1.00 2668 154 0.1635 0.1577 REMARK 3 6 1.5800 - 1.4900 0.99 2648 123 0.1723 0.1603 REMARK 3 7 1.4900 - 1.4200 0.98 2633 126 0.1693 0.2002 REMARK 3 8 1.4200 - 1.3500 0.99 2638 131 0.1689 0.1792 REMARK 3 9 1.3500 - 1.3000 0.98 2608 147 0.1649 0.1937 REMARK 3 10 1.3000 - 1.2600 0.98 2604 130 0.1870 0.2177 REMARK 3 11 1.2600 - 1.2200 0.97 2568 134 0.2058 0.2318 REMARK 3 12 1.2200 - 1.1800 0.92 2380 141 0.1930 0.1921 REMARK 3 13 1.1800 - 1.1500 0.78 2073 103 0.2072 0.2258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.096 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.063 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 855 REMARK 3 ANGLE : 1.431 1173 REMARK 3 CHIRALITY : 0.115 132 REMARK 3 PLANARITY : 0.013 141 REMARK 3 DIHEDRAL : 11.924 139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6864 -6.3720 3.9864 REMARK 3 T TENSOR REMARK 3 T11: 0.0588 T22: 0.1045 REMARK 3 T33: 0.0547 T12: -0.0078 REMARK 3 T13: -0.0094 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 2.0057 L22: 2.8959 REMARK 3 L33: 2.6316 L12: -0.1651 REMARK 3 L13: 0.1805 L23: -1.1269 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: -0.1394 S13: -0.0237 REMARK 3 S21: 0.2282 S22: -0.0618 S23: 0.0515 REMARK 3 S31: -0.1834 S32: 0.0990 S33: 0.0381 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 338 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7633 6.4752 -5.8698 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.1017 REMARK 3 T33: 0.1122 T12: -0.0326 REMARK 3 T13: -0.0223 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.1497 L22: 7.1666 REMARK 3 L33: 5.7772 L12: -0.8523 REMARK 3 L13: -2.3501 L23: -0.6702 REMARK 3 S TENSOR REMARK 3 S11: 0.1492 S12: -0.1819 S13: 0.2599 REMARK 3 S21: 0.3174 S22: -0.1373 S23: -0.2315 REMARK 3 S31: -0.5210 S32: 0.2958 S33: -0.0104 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6271 -2.6244 -9.8775 REMARK 3 T TENSOR REMARK 3 T11: 0.0692 T22: 0.0740 REMARK 3 T33: 0.0627 T12: -0.0049 REMARK 3 T13: 0.0037 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.4547 L22: 1.9645 REMARK 3 L33: 1.1168 L12: 0.0957 REMARK 3 L13: 0.0838 L23: -0.8352 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: 0.0619 S13: 0.0291 REMARK 3 S21: -0.0839 S22: -0.0087 S23: 0.0844 REMARK 3 S31: -0.0208 S32: 0.0471 S33: -0.0212 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7380 -2.7091 -0.7773 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.1036 REMARK 3 T33: 0.1272 T12: -0.0088 REMARK 3 T13: 0.0186 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.2201 L22: 2.1642 REMARK 3 L33: 1.5119 L12: 0.2162 REMARK 3 L13: -0.1490 L23: -0.8227 REMARK 3 S TENSOR REMARK 3 S11: 0.1169 S12: -0.1545 S13: 0.0380 REMARK 3 S21: 0.1815 S22: 0.0190 S23: 0.1843 REMARK 3 S31: -0.2015 S32: -0.0051 S33: -0.1305 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7686 9.6544 -9.9541 REMARK 3 T TENSOR REMARK 3 T11: 0.1860 T22: 0.0673 REMARK 3 T33: 0.1549 T12: 0.0130 REMARK 3 T13: 0.0335 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 4.4079 L22: 1.5334 REMARK 3 L33: 1.5465 L12: 0.2941 REMARK 3 L13: -2.5361 L23: -0.5332 REMARK 3 S TENSOR REMARK 3 S11: 0.1368 S12: 0.0464 S13: 0.3001 REMARK 3 S21: 0.2627 S22: 0.0139 S23: 0.3731 REMARK 3 S31: -0.1846 S32: -0.1773 S33: -0.0263 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -3 THROUGH -1 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5278 -2.9011 -11.1127 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.2187 REMARK 3 T33: 0.1666 T12: -0.0014 REMARK 3 T13: 0.0062 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 5.2121 L22: 4.7627 REMARK 3 L33: 0.4975 L12: -2.0051 REMARK 3 L13: -0.1232 L23: -1.3570 REMARK 3 S TENSOR REMARK 3 S11: 0.0622 S12: 0.7408 S13: 0.3608 REMARK 3 S21: -0.2922 S22: -0.3297 S23: -0.3934 REMARK 3 S31: -0.1809 S32: 0.6699 S33: 0.1372 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35581 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 32.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7SOO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.056M SODIUM PHOSPHATE, 50MM SODIUM REMARK 280 CACODYLATE, 30% PEG4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.45750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.56750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.23700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.56750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.45750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.23700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 312 REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 SER A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 321 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 388 CD CE NZ REMARK 470 LYS A 405 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B -1 N3 A B -1 C4 -0.065 REMARK 500 A B -1 N9 A B -1 C4 -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B -1 N9 - C4 - C5 ANGL. DEV. = 3.5 DEGREES REMARK 500 A B -1 N3 - C4 - N9 ANGL. DEV. = -6.7 DEGREES REMARK 500 A B -1 N1 - C6 - N6 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 394 -112.97 49.52 REMARK 500 GLU A 402 56.17 37.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SOO RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT RNA REMARK 900 RELATED ID: 7SOP RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAAUAA RNA DBREF1 7SOQ A 323 410 UNP LARP1-3_HUMAN DBREF2 7SOQ A Q6PKG0-3 323 410 DBREF 7SOQ B -3 -1 PDB 7SOQ 7SOQ -3 -1 SEQADV 7SOQ MET A 312 UNP Q6PKG0-3 INITIATING METHIONINE SEQADV 7SOQ GLY A 313 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOQ SER A 314 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOQ SER A 315 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOQ HIS A 316 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOQ HIS A 317 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOQ HIS A 318 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOQ HIS A 319 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOQ HIS A 320 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOQ HIS A 321 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOQ SER A 322 UNP Q6PKG0-3 EXPRESSION TAG SEQRES 1 A 99 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLU SEQRES 2 A 99 LEU LEU LYS ASP TYR ILE LYS ARG GLN ILE GLU TYR TYR SEQRES 3 A 99 PHE SER VAL ASP ASN LEU GLU ARG ASP PHE PHE LEU ARG SEQRES 4 A 99 ARG LYS MET ASP ALA ASP GLY PHE LEU PRO ILE THR LEU SEQRES 5 A 99 ILE ALA SER PHE HIS ARG VAL GLN ALA LEU THR THR ASP SEQRES 6 A 99 ILE SER LEU ILE PHE ALA ALA LEU LYS ASP SER LYS VAL SEQRES 7 A 99 VAL GLU ILE VAL ASP GLU LYS VAL ARG ARG ARG GLU GLU SEQRES 8 A 99 PRO GLU LYS TRP PRO LEU PRO PRO SEQRES 1 B 3 A A A FORMUL 3 HOH *115(H2 O) HELIX 1 AA1 GLN A 323 PHE A 338 1 16 HELIX 2 AA2 SER A 339 GLU A 344 1 6 HELIX 3 AA3 ASP A 346 MET A 353 1 8 HELIX 4 AA4 ILE A 361 PHE A 367 1 7 HELIX 5 AA5 PHE A 367 THR A 374 1 8 HELIX 6 AA6 ASP A 376 ASP A 386 1 11 HELIX 7 AA7 GLU A 402 TRP A 406 5 5 SHEET 1 AA1 3 LEU A 359 PRO A 360 0 SHEET 2 AA1 3 LYS A 396 ARG A 399 -1 O VAL A 397 N LEU A 359 SHEET 3 AA1 3 VAL A 390 VAL A 393 -1 N VAL A 393 O LYS A 396 CRYST1 36.915 46.474 59.135 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016910 0.00000