HEADER RNA BINDING PROTEIN/RNA 01-NOV-21 7SOW TITLE LAM DOMAIN OF HUMAN LARP1 IN COMPLEX WITH UUUUUU COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF LA-RELATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 323-410; COMPND 5 SYNONYM: LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LARP1, KIAA0731, LARP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS WINGED HELIX FOLD, RNA BINDING DOMAIN, RNA BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING REVDAT 2 18-OCT-23 7SOW 1 REMARK REVDAT 1 09-NOV-22 7SOW 0 JRNL AUTH G.KOZLOV,J.JIANG,S.MATTIJSSEN,S.GAIDAMAKOV,S.NYANDWI, JRNL AUTH 2 R.MARAIA,K.GEHRING JRNL TITL STRUCTURAL BASIS OF 3'-END RNA RECOGNITION BY LARP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 24922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4400 - 2.7100 1.00 2827 149 0.1826 0.1679 REMARK 3 2 2.7100 - 2.1500 1.00 2675 160 0.1788 0.2159 REMARK 3 3 2.1500 - 1.8800 1.00 2636 166 0.1642 0.1846 REMARK 3 4 1.8800 - 1.7100 1.00 2659 121 0.1689 0.1705 REMARK 3 5 1.7100 - 1.5800 1.00 2648 144 0.1731 0.2114 REMARK 3 6 1.5800 - 1.4900 1.00 2594 158 0.1966 0.2114 REMARK 3 7 1.4900 - 1.4200 1.00 2637 123 0.1913 0.2081 REMARK 3 8 1.4200 - 1.3500 1.00 2640 136 0.2167 0.2500 REMARK 3 9 1.3500 - 1.3000 0.90 2323 126 0.3044 0.3371 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.134 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 906 REMARK 3 ANGLE : 1.486 1236 REMARK 3 CHIRALITY : 0.109 142 REMARK 3 PLANARITY : 0.012 147 REMARK 3 DIHEDRAL : 15.544 154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7993 13.5912 33.9418 REMARK 3 T TENSOR REMARK 3 T11: 0.1255 T22: 0.1482 REMARK 3 T33: 0.1561 T12: -0.0091 REMARK 3 T13: -0.0019 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.3244 L22: 1.9562 REMARK 3 L33: 2.6636 L12: -0.9230 REMARK 3 L13: 0.8404 L23: -0.3708 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: -0.0720 S13: -0.4127 REMARK 3 S21: 0.2407 S22: 0.0277 S23: 0.2818 REMARK 3 S31: 0.1159 S32: -0.0988 S33: -0.0545 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 338 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7171 30.1340 23.8348 REMARK 3 T TENSOR REMARK 3 T11: 0.2167 T22: 0.1485 REMARK 3 T33: 0.1701 T12: -0.0390 REMARK 3 T13: -0.0313 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.8311 L22: 5.1049 REMARK 3 L33: 3.5331 L12: -0.3775 REMARK 3 L13: -1.4779 L23: -0.9113 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: -0.1537 S13: 0.1788 REMARK 3 S21: 0.4224 S22: -0.2222 S23: -0.3591 REMARK 3 S31: -0.4992 S32: 0.3475 S33: 0.0500 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1412 27.5876 16.3027 REMARK 3 T TENSOR REMARK 3 T11: 0.1747 T22: 0.1322 REMARK 3 T33: 0.1647 T12: 0.0106 REMARK 3 T13: -0.0218 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 3.4657 L22: 2.5946 REMARK 3 L33: 2.0815 L12: 0.8651 REMARK 3 L13: -0.5519 L23: -1.0228 REMARK 3 S TENSOR REMARK 3 S11: 0.1009 S12: 0.2211 S13: 0.2399 REMARK 3 S21: -0.2041 S22: -0.0601 S23: 0.2206 REMARK 3 S31: -0.0187 S32: 0.1164 S33: -0.0413 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 361 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7536 13.5192 22.8466 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: 0.1445 REMARK 3 T33: 0.1258 T12: -0.0039 REMARK 3 T13: 0.0029 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.0344 L22: 0.9796 REMARK 3 L33: 0.6807 L12: -0.2759 REMARK 3 L13: 0.7693 L23: -0.5212 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: -0.0560 S13: 0.0311 REMARK 3 S21: 0.0174 S22: -0.0759 S23: -0.0119 REMARK 3 S31: 0.0020 S32: 0.0913 S33: 0.0155 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6694 14.1246 30.4842 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.1480 REMARK 3 T33: 0.1535 T12: 0.0034 REMARK 3 T13: -0.0062 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 5.1571 L22: 3.4934 REMARK 3 L33: 4.9586 L12: -0.0434 REMARK 3 L13: 0.7250 L23: -0.9243 REMARK 3 S TENSOR REMARK 3 S11: 0.1876 S12: 0.0351 S13: 0.2919 REMARK 3 S21: -0.1659 S22: 0.0629 S23: 0.3230 REMARK 3 S31: 0.0927 S32: -0.2112 S33: -0.3178 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 386 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5256 24.0564 27.1446 REMARK 3 T TENSOR REMARK 3 T11: 0.1735 T22: 0.1386 REMARK 3 T33: 0.1897 T12: 0.0000 REMARK 3 T13: 0.0338 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.6834 L22: 1.6244 REMARK 3 L33: 2.2473 L12: 0.9743 REMARK 3 L13: -0.1215 L23: 0.2005 REMARK 3 S TENSOR REMARK 3 S11: 0.2093 S12: -0.2516 S13: -0.0060 REMARK 3 S21: 0.2472 S22: -0.0968 S23: 0.3272 REMARK 3 S31: -0.0875 S32: -0.2223 S33: -0.0814 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7615 33.4044 19.6035 REMARK 3 T TENSOR REMARK 3 T11: 0.2379 T22: 0.1382 REMARK 3 T33: 0.2109 T12: 0.0136 REMARK 3 T13: 0.0254 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.4450 L22: 1.9795 REMARK 3 L33: 5.7718 L12: -0.0287 REMARK 3 L13: -1.1494 L23: -1.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.1458 S12: 0.0275 S13: 0.0615 REMARK 3 S21: 0.2459 S22: -0.0463 S23: 0.3557 REMARK 3 S31: -0.2241 S32: -0.2439 S33: -0.2389 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH -1 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8395 19.8808 17.0918 REMARK 3 T TENSOR REMARK 3 T11: 0.2342 T22: 0.2766 REMARK 3 T33: 0.2074 T12: 0.0398 REMARK 3 T13: 0.0316 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 8.3006 L22: 6.3051 REMARK 3 L33: 1.3505 L12: 1.2127 REMARK 3 L13: 1.0753 L23: -2.5645 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: 0.5710 S13: -0.0286 REMARK 3 S21: -0.7670 S22: -0.3180 S23: -0.4488 REMARK 3 S31: 0.0898 S32: 0.6656 S33: 0.1578 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SOW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96860 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24922 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7SOO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 25% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.40200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.95200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.44250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.95200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.40200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.44250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 312 REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 SER A 315 REMARK 465 U B -6 REMARK 465 U B -5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 316 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 321 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 332 CD NE CZ NH1 NH2 REMARK 470 LYS A 385 CE NZ REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 U B -4 P OP1 OP2 O5' C2 O2 N3 REMARK 470 U B -4 C4 O4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 401 O HOH A 601 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 337 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 394 -113.05 52.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SOO RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT BOUND RNA REMARK 900 RELATED ID: 7SOP RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAAUAA RNA REMARK 900 RELATED ID: 7SOQ RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAA RNA REMARK 900 RELATED ID: 7SOR RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAA RNA IN A DIFFERENT CRYSTAL FORM REMARK 900 RELATED ID: 7SOS RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAAA RNA REMARK 900 RELATED ID: 7SOT RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAAAAA RNA REMARK 900 RELATED ID: 7SOU RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAAAAA RNA WITH A DIFFERENT RNA CONFORMATION REMARK 900 RELATED ID: 7SOV RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND AAAAAAAAAAA RNA DBREF1 7SOW A 323 410 UNP LARP1-3_HUMAN DBREF2 7SOW A Q6PKG0-3 323 410 DBREF 7SOW B -6 -1 PDB 7SOW 7SOW -6 -1 SEQADV 7SOW MET A 312 UNP Q6PKG0-3 INITIATING METHIONINE SEQADV 7SOW GLY A 313 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOW SER A 314 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOW SER A 315 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOW HIS A 316 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOW HIS A 317 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOW HIS A 318 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOW HIS A 319 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOW HIS A 320 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOW HIS A 321 UNP Q6PKG0-3 EXPRESSION TAG SEQADV 7SOW SER A 322 UNP Q6PKG0-3 EXPRESSION TAG SEQRES 1 A 99 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLU SEQRES 2 A 99 LEU LEU LYS ASP TYR ILE LYS ARG GLN ILE GLU TYR TYR SEQRES 3 A 99 PHE SER VAL ASP ASN LEU GLU ARG ASP PHE PHE LEU ARG SEQRES 4 A 99 ARG LYS MET ASP ALA ASP GLY PHE LEU PRO ILE THR LEU SEQRES 5 A 99 ILE ALA SER PHE HIS ARG VAL GLN ALA LEU THR THR ASP SEQRES 6 A 99 ILE SER LEU ILE PHE ALA ALA LEU LYS ASP SER LYS VAL SEQRES 7 A 99 VAL GLU ILE VAL ASP GLU LYS VAL ARG ARG ARG GLU GLU SEQRES 8 A 99 PRO GLU LYS TRP PRO LEU PRO PRO SEQRES 1 B 6 U U U U U U HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO B 101 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *66(H2 O) HELIX 1 AA1 HIS A 320 SER A 322 5 3 HELIX 2 AA2 GLN A 323 PHE A 338 1 16 HELIX 3 AA3 SER A 339 GLU A 344 1 6 HELIX 4 AA4 ASP A 346 LYS A 352 1 7 HELIX 5 AA5 ILE A 361 PHE A 367 1 7 HELIX 6 AA6 PHE A 367 THR A 374 1 8 HELIX 7 AA7 ASP A 376 ASP A 386 1 11 HELIX 8 AA8 GLU A 402 TRP A 406 5 5 SHEET 1 AA1 3 LEU A 359 PRO A 360 0 SHEET 2 AA1 3 LYS A 396 ARG A 399 -1 O VAL A 397 N LEU A 359 SHEET 3 AA1 3 VAL A 390 VAL A 393 -1 N GLU A 391 O ARG A 398 CRYST1 36.804 46.885 57.904 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027171 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017270 0.00000