HEADER VIRAL PROTEIN/IMMUNE SYSTEM 02-NOV-21 7SPP TITLE CRYSTAL STRUCTURE OF THE SARS-COV-2 RECEPTOR BINDING DOMAIN IN COMPLEX TITLE 2 WITH VNAR 2C02 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VNAR 2C02; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2, COVID-19 VIRUS; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SQUALUS ACANTHIAS; SOURCE 12 ORGANISM_COMMON: LLAMA; SOURCE 13 ORGANISM_TAXID: 7797; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RBD, VIRAL PROTEIN, VNAR, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,H.AIHARA REVDAT 2 18-OCT-23 7SPP 1 REMARK REVDAT 1 05-JAN-22 7SPP 0 JRNL AUTH O.C.UBAH,E.W.LAKE,G.S.GUNARATNE,J.P.GALLANT,M.FERNIE, JRNL AUTH 2 A.J.ROBERTSON,J.S.MARCHANT,T.D.BOLD,R.A.LANGLOIS, JRNL AUTH 3 W.E.MATCHETT,J.M.THIEDE,K.SHI,L.YIN,N.H.MOELLER,S.BANERJEE, JRNL AUTH 4 L.FERGUSON,M.KOVALEVA,A.J.PORTER,H.AIHARA,A.M.LEBEAU, JRNL AUTH 5 C.J.BARELLE JRNL TITL MECHANISMS OF SARS-COV-2 NEUTRALIZATION BY SHARK VARIABLE JRNL TITL 2 NEW ANTIGEN RECEPTORS ELUCIDATED THROUGH X-RAY JRNL TITL 3 CRYSTALLOGRAPHY. JRNL REF NAT COMMUN V. 12 7325 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34916516 JRNL DOI 10.1038/S41467-021-27611-Y REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20RC3_4406 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 24921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3300 - 4.0800 0.95 2701 139 0.1495 0.1596 REMARK 3 2 4.0800 - 3.2400 0.98 2659 152 0.1682 0.2091 REMARK 3 3 3.2400 - 2.8300 0.98 2605 168 0.2006 0.2636 REMARK 3 4 2.8300 - 2.5700 0.99 2636 138 0.2157 0.2657 REMARK 3 5 2.5700 - 2.3800 0.99 2667 125 0.2304 0.3180 REMARK 3 6 2.3800 - 2.2400 0.99 2618 134 0.2218 0.2662 REMARK 3 7 2.2400 - 2.1300 0.98 2573 154 0.2393 0.2601 REMARK 3 8 2.1300 - 2.0400 0.98 2580 129 0.2871 0.3434 REMARK 3 9 2.0400 - 1.9600 0.98 2619 124 0.3689 0.3856 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.266 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.538 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2517 REMARK 3 ANGLE : 1.030 3423 REMARK 3 CHIRALITY : 0.060 369 REMARK 3 PLANARITY : 0.010 448 REMARK 3 DIHEDRAL : 12.329 906 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8522 12.1334 12.4365 REMARK 3 T TENSOR REMARK 3 T11: 0.3641 T22: 0.5678 REMARK 3 T33: 0.4541 T12: -0.0009 REMARK 3 T13: -0.0320 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 5.3009 L22: 3.6815 REMARK 3 L33: 3.7528 L12: -3.2366 REMARK 3 L13: 0.2036 L23: -2.5653 REMARK 3 S TENSOR REMARK 3 S11: -0.2991 S12: 0.0217 S13: -0.0021 REMARK 3 S21: 0.7787 S22: 0.1758 S23: 0.5728 REMARK 3 S31: -0.8121 S32: -0.1574 S33: -0.3377 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3294 13.6146 5.9815 REMARK 3 T TENSOR REMARK 3 T11: 0.5073 T22: 0.4897 REMARK 3 T33: 0.4164 T12: -0.0245 REMARK 3 T13: -0.1112 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 7.5892 L22: 4.5299 REMARK 3 L33: 2.1550 L12: -5.5048 REMARK 3 L13: 1.6426 L23: -2.2174 REMARK 3 S TENSOR REMARK 3 S11: 0.1898 S12: 0.6753 S13: 0.2009 REMARK 3 S21: -0.7550 S22: -0.1442 S23: 0.2205 REMARK 3 S31: -0.2102 S32: 0.0892 S33: -0.0677 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7898 23.6296 19.9385 REMARK 3 T TENSOR REMARK 3 T11: 0.9287 T22: 0.7241 REMARK 3 T33: 0.6812 T12: 0.1386 REMARK 3 T13: 0.0878 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.2415 L22: 9.8902 REMARK 3 L33: 4.2459 L12: -3.2953 REMARK 3 L13: 2.0958 L23: -6.4459 REMARK 3 S TENSOR REMARK 3 S11: -0.1335 S12: 0.3777 S13: 0.5965 REMARK 3 S21: 1.6137 S22: 0.3102 S23: 0.6753 REMARK 3 S31: -2.5780 S32: -0.6899 S33: -0.2578 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9130 16.7340 13.3909 REMARK 3 T TENSOR REMARK 3 T11: 0.4546 T22: 0.5975 REMARK 3 T33: 0.3378 T12: -0.1321 REMARK 3 T13: -0.0258 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.7826 L22: 3.4077 REMARK 3 L33: 2.8732 L12: -0.7314 REMARK 3 L13: -0.2798 L23: 0.3487 REMARK 3 S TENSOR REMARK 3 S11: 0.0740 S12: -0.1028 S13: 0.2967 REMARK 3 S21: -0.1726 S22: -0.1208 S23: -0.0288 REMARK 3 S31: -0.4285 S32: 0.4841 S33: 0.0495 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 516 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1257 1.4065 14.9309 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.5406 REMARK 3 T33: 0.3065 T12: -0.0385 REMARK 3 T13: -0.0072 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.8404 L22: 1.3840 REMARK 3 L33: 1.0464 L12: -0.4791 REMARK 3 L13: 0.0101 L23: 0.5033 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: 0.1682 S13: -0.1304 REMARK 3 S21: -0.1093 S22: -0.1105 S23: 0.0129 REMARK 3 S31: 0.0092 S32: 0.2416 S33: 0.0713 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 517 THROUGH 528 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8541 28.1517 -0.4487 REMARK 3 T TENSOR REMARK 3 T11: 0.8903 T22: 0.6892 REMARK 3 T33: 0.4919 T12: -0.1607 REMARK 3 T13: -0.1344 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 5.0165 L22: 5.0068 REMARK 3 L33: 5.8055 L12: 0.1878 REMARK 3 L13: -2.1351 L23: -2.0973 REMARK 3 S TENSOR REMARK 3 S11: 0.1896 S12: 0.6797 S13: 0.6943 REMARK 3 S21: -1.2766 S22: 0.2971 S23: -0.1815 REMARK 3 S31: -0.5376 S32: -0.2764 S33: -0.0766 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 20 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2311 -17.9123 13.4514 REMARK 3 T TENSOR REMARK 3 T11: 0.4319 T22: 0.4615 REMARK 3 T33: 0.3487 T12: -0.0184 REMARK 3 T13: 0.0480 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 3.3141 L22: 5.4583 REMARK 3 L33: 4.0911 L12: 1.5766 REMARK 3 L13: -0.1617 L23: -1.7844 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: -0.1691 S13: -0.4130 REMARK 3 S21: 0.1120 S22: -0.0348 S23: -0.0773 REMARK 3 S31: 0.5005 S32: -0.1580 S33: 0.0909 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 74 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2649 -19.3795 4.7994 REMARK 3 T TENSOR REMARK 3 T11: 0.6530 T22: 0.5823 REMARK 3 T33: 0.3470 T12: -0.0110 REMARK 3 T13: 0.1365 T23: -0.0678 REMARK 3 L TENSOR REMARK 3 L11: 6.9159 L22: 8.2198 REMARK 3 L33: 4.7094 L12: -2.2069 REMARK 3 L13: 5.0983 L23: -4.1844 REMARK 3 S TENSOR REMARK 3 S11: 0.1718 S12: 0.5963 S13: -0.6009 REMARK 3 S21: -1.1086 S22: 0.0342 S23: 0.0256 REMARK 3 S31: 1.1746 S32: 0.0367 S33: -0.1014 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5146 -14.4321 13.6952 REMARK 3 T TENSOR REMARK 3 T11: 0.3313 T22: 0.5718 REMARK 3 T33: 0.3654 T12: -0.0381 REMARK 3 T13: 0.0201 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 3.0539 L22: 5.1717 REMARK 3 L33: 3.9080 L12: 2.0831 REMARK 3 L13: 0.0465 L23: -0.8005 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: -0.2824 S13: -0.3920 REMARK 3 S21: 0.1560 S22: -0.1493 S23: -0.1508 REMARK 3 S31: 0.3804 S32: -0.2679 S33: -0.0448 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000258423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 47.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 1.27800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6YM0,4HGK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM SULFATE AND 20 % (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.72400 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.72800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.72400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.72800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 319 REMARK 465 VAL A 320 REMARK 465 GLN A 321 REMARK 465 PRO A 322 REMARK 465 THR A 323 REMARK 465 GLU A 324 REMARK 465 SER A 325 REMARK 465 ILE A 326 REMARK 465 VAL A 327 REMARK 465 ARG A 328 REMARK 465 PHE A 329 REMARK 465 PRO A 330 REMARK 465 ASN A 331 REMARK 465 ILE A 332 REMARK 465 THR A 333 REMARK 465 LYS A 529 REMARK 465 SER A 530 REMARK 465 THR A 531 REMARK 465 ASN A 532 REMARK 465 LEU A 533 REMARK 465 VAL A 534 REMARK 465 LYS A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 MET C 19 REMARK 465 HIS C 130 REMARK 465 HIS C 131 REMARK 465 HIS C 132 REMARK 465 HIS C 133 REMARK 465 HIS C 134 REMARK 465 HIS C 135 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 408 O HOH A 703 1.52 REMARK 500 H CYS A 480 O HOH A 705 1.56 REMARK 500 OD1 ASN A 450 O HOH A 701 2.15 REMARK 500 O ASN A 448 O HOH A 702 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 422 -49.38 -130.53 REMARK 500 ASP A 428 34.29 -96.01 REMARK 500 PRO A 527 3.64 -64.12 REMARK 500 THR C 53 -61.50 -98.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 7SPP A 319 535 UNP P0DTC2 SPIKE_SARS2 319 535 DBREF 7SPP C 19 135 PDB 7SPP 7SPP 19 135 SEQADV 7SPP HIS A 536 UNP P0DTC2 EXPRESSION TAG SEQADV 7SPP HIS A 537 UNP P0DTC2 EXPRESSION TAG SEQADV 7SPP HIS A 538 UNP P0DTC2 EXPRESSION TAG SEQADV 7SPP HIS A 539 UNP P0DTC2 EXPRESSION TAG SEQADV 7SPP HIS A 540 UNP P0DTC2 EXPRESSION TAG SEQADV 7SPP HIS A 541 UNP P0DTC2 EXPRESSION TAG SEQADV 7SPP HIS A 542 UNP P0DTC2 EXPRESSION TAG SEQADV 7SPP HIS A 543 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 225 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 A 225 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 A 225 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 A 225 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 A 225 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 A 225 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 A 225 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 A 225 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 A 225 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 A 225 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 A 225 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 A 225 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 A 225 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 A 225 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 A 225 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 A 225 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 A 225 PRO LYS LYS SER THR ASN LEU VAL LYS HIS HIS HIS HIS SEQRES 18 A 225 HIS HIS HIS HIS SEQRES 1 C 117 MET ALA SER VAL ASN GLN THR PRO ARG THR ALA THR LYS SEQRES 2 C 117 GLU THR GLY GLU SER LEU THR ILE ASN CYS VAL VAL THR SEQRES 3 C 117 GLY ALA SER CYS SER TRP SER ARG THR TYR TRP TYR ARG SEQRES 4 C 117 LYS ASN PRO GLY SER SER ASN GLN GLU ARG ILE SER ILE SEQRES 5 C 117 SER GLY ARG TYR VAL GLU SER VAL ASN LYS GLY ALA LYS SEQRES 6 C 117 SER PHE SER LEU ARG ILE LYS ASP LEU THR VAL ALA ASP SEQRES 7 C 117 SER ALA THR TYR TYR CYS LYS ALA LEU ILE ASN THR GLY SEQRES 8 C 117 LYS ASP CYS THR MET ASN PHE HIS TYR ASP GLY ALA GLY SEQRES 9 C 117 THR VAL LEU THR VAL ASN GLN HIS HIS HIS HIS HIS HIS HET EDO A 601 10 HET NAG A 602 28 HET EDO A 603 10 HET CL C 201 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 NAG C8 H15 N O6 FORMUL 6 CL CL 1- FORMUL 7 HOH *128(H2 O) HELIX 1 AA1 PRO A 337 ASN A 343 1 7 HELIX 2 AA2 SER A 349 TRP A 353 5 5 HELIX 3 AA3 TYR A 365 ASN A 370 1 6 HELIX 4 AA4 SER A 383 ASP A 389 5 7 HELIX 5 AA5 ASP A 405 ILE A 410 5 6 HELIX 6 AA6 GLY A 416 ASN A 422 1 7 HELIX 7 AA7 SER A 438 SER A 443 1 6 HELIX 8 AA8 GLY A 502 TYR A 505 5 4 HELIX 9 AA9 LYS C 80 ALA C 82 5 3 HELIX 10 AB1 THR C 93 SER C 97 5 5 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AA1 5 PRO A 507 GLU A 516 -1 O SER A 514 N TYR A 396 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 5 THR A 376 TYR A 380 -1 N LYS A 378 O VAL A 433 SHEET 1 AA2 3 CYS A 361 VAL A 362 0 SHEET 2 AA2 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AA2 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA5 4 SER C 21 THR C 25 0 SHEET 2 AA5 4 LEU C 37 THR C 44 -1 O VAL C 42 N ASN C 23 SHEET 3 AA5 4 SER C 84 ILE C 89 -1 O ILE C 89 N LEU C 37 SHEET 4 AA5 4 TYR C 74 ASN C 79 -1 N VAL C 75 O ARG C 88 SHEET 1 AA6 5 THR C 28 GLU C 32 0 SHEET 2 AA6 5 THR C 123 ASN C 128 1 O THR C 126 N ALA C 29 SHEET 3 AA6 5 ALA C 98 THR C 108 -1 N ALA C 98 O LEU C 125 SHEET 4 AA6 5 TRP C 50 LYS C 58 -1 N TYR C 56 O TYR C 101 SHEET 5 AA6 5 GLU C 66 ARG C 67 -1 O GLU C 66 N ARG C 57 SHEET 1 AA7 4 THR C 28 GLU C 32 0 SHEET 2 AA7 4 THR C 123 ASN C 128 1 O THR C 126 N ALA C 29 SHEET 3 AA7 4 ALA C 98 THR C 108 -1 N ALA C 98 O LEU C 125 SHEET 4 AA7 4 MET C 114 ASP C 119 -1 O PHE C 116 N ILE C 106 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.08 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.10 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.05 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.04 SSBOND 5 CYS C 41 CYS C 102 1555 1555 2.03 SSBOND 6 CYS C 48 CYS C 112 1555 1555 2.04 LINK ND2 ASN A 343 C1 NAG A 602 1555 1555 1.47 CISPEP 1 THR C 25 PRO C 26 0 -3.92 CRYST1 61.448 74.229 75.456 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016274 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013253 0.00000