HEADER TRANSCRIPTION 05-NOV-21 7SQA TITLE PPAR GAMMA LBD BOUND TO SR10221 AND SMRT COREPRESSOR MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR RECEPTOR COREPRESSOR 2; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: N-COR2,CTG REPEAT PROTEIN 26,SMAP270,SILENCING MEDIATOR OF COMPND 10 RETINOIC ACID AND THYROID HORMONE RECEPTOR,SMRT,T3 RECEPTOR- COMPND 11 ASSOCIATING FACTOR,TRAC,THYROID-,RETINOIC-ACID-RECEPTOR-ASSOCIATED COMPND 12 COREPRESSOR; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS INVERSE AGONIST, NUCLEAR RECEPTOR, LIGAND BINDING DOMAIN, KEYWDS 2 COREPRESSOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.L.FRKIC,J.L.PEDERICK,J.B.BRUNING REVDAT 4 25-OCT-23 7SQA 1 REMARK REVDAT 3 31-MAY-23 7SQA 1 JRNL REVDAT 2 17-MAY-23 7SQA 1 JRNL REVDAT 1 10-MAY-23 7SQA 0 JRNL AUTH R.L.FRKIC,J.L.PEDERICK,A.J.HORSFALL,B.JOVCEVSKI,E.E.CRAME, JRNL AUTH 2 W.KOWALCZYK,T.L.PUKALA,M.R.CHANG,J.ZHENG,A.L.BLAYO, JRNL AUTH 3 A.D.ABELL,T.M.KAMENECKA,J.S.HARBORT,J.R.HARMER,P.R.GRIFFIN, JRNL AUTH 4 J.B.BRUNING JRNL TITL PPAR GAMMA COREPRESSION INVOLVES ALTERNATE LIGAND JRNL TITL 2 CONFORMATION AND INFLATION OF H12 ENSEMBLES. JRNL REF ACS CHEM.BIOL. V. 18 1115 2023 JRNL REFN ESSN 1554-8937 JRNL PMID 37146157 JRNL DOI 10.1021/ACSCHEMBIO.2C00917 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 22012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8840 - 4.9948 0.98 2699 152 0.2039 0.2324 REMARK 3 2 4.9948 - 3.9655 0.99 2651 167 0.1827 0.2471 REMARK 3 3 3.9655 - 3.4645 0.92 2448 130 0.2327 0.2957 REMARK 3 4 3.4645 - 3.1479 0.98 2596 151 0.2598 0.2953 REMARK 3 5 3.1479 - 2.9223 1.00 2651 146 0.2765 0.4020 REMARK 3 6 2.9223 - 2.7500 1.00 2652 140 0.2852 0.3309 REMARK 3 7 2.7500 - 2.6123 0.96 2573 124 0.3181 0.3661 REMARK 3 8 2.6123 - 2.4990 0.98 2605 127 0.3053 0.3805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2996 -10.3379 -43.6121 REMARK 3 T TENSOR REMARK 3 T11: 0.5396 T22: 0.3537 REMARK 3 T33: 0.5028 T12: -0.0970 REMARK 3 T13: -0.0832 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.3017 L22: 6.0107 REMARK 3 L33: 2.2561 L12: -2.7957 REMARK 3 L13: 1.2448 L23: -2.7577 REMARK 3 S TENSOR REMARK 3 S11: 0.4064 S12: 0.0046 S13: -0.3295 REMARK 3 S21: -0.7430 S22: -0.0239 S23: 0.8079 REMARK 3 S31: 0.4615 S32: -0.1794 S33: -0.2854 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3871 -6.9269 -31.1520 REMARK 3 T TENSOR REMARK 3 T11: 0.3532 T22: 0.3529 REMARK 3 T33: 0.2815 T12: -0.0735 REMARK 3 T13: 0.0331 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 1.6423 L22: 2.5250 REMARK 3 L33: 2.2045 L12: -1.6848 REMARK 3 L13: 0.4445 L23: -1.0710 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: -0.2645 S13: -0.0237 REMARK 3 S21: 0.1766 S22: 0.1693 S23: 0.1882 REMARK 3 S31: -0.1485 S32: -0.3643 S33: -0.1210 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 202 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7960 -6.8221 -7.8990 REMARK 3 T TENSOR REMARK 3 T11: 0.4416 T22: 0.3704 REMARK 3 T33: 0.2730 T12: -0.0350 REMARK 3 T13: -0.0242 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 2.0076 L22: 2.4398 REMARK 3 L33: 3.5488 L12: -0.7576 REMARK 3 L13: -0.2631 L23: 1.5197 REMARK 3 S TENSOR REMARK 3 S11: -0.1740 S12: -0.3121 S13: 0.2388 REMARK 3 S21: 0.6001 S22: 0.1172 S23: -0.0532 REMARK 3 S31: 0.1267 S32: 0.6543 S33: 0.1043 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 252 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4981 10.5491 11.7250 REMARK 3 T TENSOR REMARK 3 T11: 0.7409 T22: 0.4395 REMARK 3 T33: 0.3093 T12: -0.0676 REMARK 3 T13: -0.0124 T23: -0.1675 REMARK 3 L TENSOR REMARK 3 L11: 2.1131 L22: 7.2188 REMARK 3 L33: 4.3438 L12: -2.0824 REMARK 3 L13: -0.6865 L23: 0.5878 REMARK 3 S TENSOR REMARK 3 S11: 0.3143 S12: 0.0657 S13: -0.1034 REMARK 3 S21: 0.5948 S22: -0.5160 S23: -0.0064 REMARK 3 S31: -0.1297 S32: 0.5374 S33: -0.2581 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 277 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5021 0.2907 -12.2844 REMARK 3 T TENSOR REMARK 3 T11: 0.4181 T22: 0.3574 REMARK 3 T33: 0.3232 T12: -0.0079 REMARK 3 T13: 0.0007 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.9509 L22: 2.4041 REMARK 3 L33: 3.6971 L12: -0.3945 REMARK 3 L13: 0.1689 L23: 1.3759 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: 0.0538 S13: 0.1018 REMARK 3 S21: -0.1166 S22: -0.1088 S23: 0.3075 REMARK 3 S31: -0.5982 S32: -0.2733 S33: 0.0878 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2338 THROUGH 2352 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3015 16.3615 -16.4803 REMARK 3 T TENSOR REMARK 3 T11: 1.4528 T22: 0.3454 REMARK 3 T33: 0.5708 T12: -0.0112 REMARK 3 T13: -0.1308 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 4.1811 L22: 3.6542 REMARK 3 L33: 5.6426 L12: 2.0707 REMARK 3 L13: -3.6954 L23: 0.6707 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: -0.0723 S13: 0.8373 REMARK 3 S21: 0.1861 S22: 0.4738 S23: 0.2842 REMARK 3 S31: 0.6794 S32: 0.3132 S33: 0.2252 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2339 THROUGH 2350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1254 -14.0006 -24.1583 REMARK 3 T TENSOR REMARK 3 T11: 0.3749 T22: 0.7902 REMARK 3 T33: 0.4944 T12: 0.1351 REMARK 3 T13: 0.3164 T23: 0.1418 REMARK 3 L TENSOR REMARK 3 L11: 4.4904 L22: 2.9206 REMARK 3 L33: 4.2454 L12: 0.9327 REMARK 3 L13: -2.5189 L23: 0.7656 REMARK 3 S TENSOR REMARK 3 S11: -0.2429 S12: -0.1762 S13: -0.1080 REMARK 3 S21: 0.3726 S22: 0.0407 S23: 0.3668 REMARK 3 S31: 0.3909 S32: -0.2570 S33: 0.7158 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000260883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22167 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.499 REMARK 200 RESOLUTION RANGE LOW (A) : 43.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.14100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 1.15800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6PDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 8,000, 0.1M AMMONIUM SULPHATE, REMARK 280 0.1M MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.85000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 188 REMARK 465 ALA A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 VAL A 196 REMARK 465 ASP A 197 REMARK 465 ASP A 198 REMARK 465 ASP A 199 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 ASP A 462 REMARK 465 MET A 463 REMARK 465 SER A 464 REMARK 465 LEU A 465 REMARK 465 HIS A 466 REMARK 465 PRO A 467 REMARK 465 LEU A 468 REMARK 465 LEU A 469 REMARK 465 GLN A 470 REMARK 465 GLU A 471 REMARK 465 ILE A 472 REMARK 465 TYR A 473 REMARK 465 LYS A 474 REMARK 465 ASP A 475 REMARK 465 LEU A 476 REMARK 465 TYR A 477 REMARK 465 MET B 188 REMARK 465 ALA B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 VAL B 196 REMARK 465 ASP B 197 REMARK 465 ASP B 198 REMARK 465 ASP B 199 REMARK 465 ASP B 200 REMARK 465 LYS B 201 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 465 HIS B 466 REMARK 465 PRO B 467 REMARK 465 LEU B 468 REMARK 465 LEU B 469 REMARK 465 GLN B 470 REMARK 465 GLU B 471 REMARK 465 ILE B 472 REMARK 465 TYR B 473 REMARK 465 LYS B 474 REMARK 465 ASP B 475 REMARK 465 LEU B 476 REMARK 465 TYR B 477 REMARK 465 THR C 2337 REMARK 465 TYR C 2353 REMARK 465 ASP C 2354 REMARK 465 GLN C 2355 REMARK 465 TRP C 2356 REMARK 465 GLU C 2357 REMARK 465 GLU C 2358 REMARK 465 THR D 2337 REMARK 465 ASN D 2338 REMARK 465 GLY D 2351 REMARK 465 LYS D 2352 REMARK 465 TYR D 2353 REMARK 465 ASP D 2354 REMARK 465 GLN D 2355 REMARK 465 TRP D 2356 REMARK 465 GLU D 2357 REMARK 465 GLU D 2358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 200 CG OD1 OD2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 HIS B 449 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 458 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 2347 O HOH C 2401 2.17 REMARK 500 O TYR A 250 O HOH A 601 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 243 39.75 -96.42 REMARK 500 SER A 245 75.31 60.43 REMARK 500 ASP A 260 46.75 -85.49 REMARK 500 LYS A 263 -157.32 -149.41 REMARK 500 LYS A 265 41.97 -99.22 REMARK 500 GLU A 460 -4.54 -144.85 REMARK 500 ASP B 243 42.73 -98.16 REMARK 500 LYS B 244 170.85 -59.24 REMARK 500 SER B 245 73.20 63.31 REMARK 500 HIS B 266 70.63 52.42 REMARK 500 SER B 274 -168.87 -79.10 REMARK 500 ASP B 362 53.20 -93.21 REMARK 500 THR B 459 52.51 37.36 REMARK 500 LEU D2341 -9.08 71.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 704 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 705 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A 706 DISTANCE = 12.64 ANGSTROMS DBREF 7SQA A 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 7SQA B 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 7SQA C 2337 2358 UNP Q9Y618 NCOR2_HUMAN 2335 2356 DBREF 7SQA D 2337 2358 UNP Q9Y618 NCOR2_HUMAN 2335 2356 SEQADV 7SQA MET A 188 UNP P37231 INITIATING METHIONINE SEQADV 7SQA ALA A 189 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS A 190 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS A 191 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS A 192 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS A 193 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS A 194 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS A 195 UNP P37231 EXPRESSION TAG SEQADV 7SQA VAL A 196 UNP P37231 EXPRESSION TAG SEQADV 7SQA ASP A 197 UNP P37231 EXPRESSION TAG SEQADV 7SQA ASP A 198 UNP P37231 EXPRESSION TAG SEQADV 7SQA ASP A 199 UNP P37231 EXPRESSION TAG SEQADV 7SQA ASP A 200 UNP P37231 EXPRESSION TAG SEQADV 7SQA LYS A 201 UNP P37231 EXPRESSION TAG SEQADV 7SQA MET A 202 UNP P37231 EXPRESSION TAG SEQADV 7SQA MET B 188 UNP P37231 INITIATING METHIONINE SEQADV 7SQA ALA B 189 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS B 190 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS B 191 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS B 192 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS B 193 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS B 194 UNP P37231 EXPRESSION TAG SEQADV 7SQA HIS B 195 UNP P37231 EXPRESSION TAG SEQADV 7SQA VAL B 196 UNP P37231 EXPRESSION TAG SEQADV 7SQA ASP B 197 UNP P37231 EXPRESSION TAG SEQADV 7SQA ASP B 198 UNP P37231 EXPRESSION TAG SEQADV 7SQA ASP B 199 UNP P37231 EXPRESSION TAG SEQADV 7SQA ASP B 200 UNP P37231 EXPRESSION TAG SEQADV 7SQA LYS B 201 UNP P37231 EXPRESSION TAG SEQADV 7SQA MET B 202 UNP P37231 EXPRESSION TAG SEQRES 1 A 290 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 290 LYS MET GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA SEQRES 3 A 290 LEU ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE SEQRES 4 A 290 PRO LEU THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY SEQRES 5 A 290 LYS THR THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET SEQRES 6 A 290 ASN SER LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS SEQRES 7 A 290 HIS ILE THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA SEQRES 8 A 290 ILE ARG ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU SEQRES 9 A 290 ALA VAL GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO SEQRES 10 A 290 GLY PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU SEQRES 11 A 290 LEU LYS TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU SEQRES 12 A 290 ALA SER LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU SEQRES 13 A 290 GLY GLN GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU SEQRES 14 A 290 ARG LYS PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU SEQRES 15 A 290 PHE ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER SEQRES 16 A 290 ASP LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY SEQRES 17 A 290 ASP ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP SEQRES 18 A 290 ILE GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU SEQRES 19 A 290 LYS LEU ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS SEQRES 20 A 290 LEU LEU GLN LYS MET THR ASP LEU ARG GLN ILE VAL THR SEQRES 21 A 290 GLU HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU SEQRES 22 A 290 THR ASP MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR SEQRES 23 A 290 LYS ASP LEU TYR SEQRES 1 B 290 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 290 LYS MET GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA SEQRES 3 B 290 LEU ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE SEQRES 4 B 290 PRO LEU THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY SEQRES 5 B 290 LYS THR THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET SEQRES 6 B 290 ASN SER LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS SEQRES 7 B 290 HIS ILE THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA SEQRES 8 B 290 ILE ARG ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU SEQRES 9 B 290 ALA VAL GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO SEQRES 10 B 290 GLY PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU SEQRES 11 B 290 LEU LYS TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU SEQRES 12 B 290 ALA SER LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU SEQRES 13 B 290 GLY GLN GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU SEQRES 14 B 290 ARG LYS PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU SEQRES 15 B 290 PHE ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER SEQRES 16 B 290 ASP LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY SEQRES 17 B 290 ASP ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP SEQRES 18 B 290 ILE GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU SEQRES 19 B 290 LYS LEU ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS SEQRES 20 B 290 LEU LEU GLN LYS MET THR ASP LEU ARG GLN ILE VAL THR SEQRES 21 B 290 GLU HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU SEQRES 22 B 290 THR ASP MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR SEQRES 23 B 290 LYS ASP LEU TYR SEQRES 1 C 22 THR ASN MET GLY LEU GLU ALA ILE ILE ARG LYS ALA LEU SEQRES 2 C 22 MET GLY LYS TYR ASP GLN TRP GLU GLU SEQRES 1 D 22 THR ASN MET GLY LEU GLU ALA ILE ILE ARG LYS ALA LEU SEQRES 2 D 22 MET GLY LYS TYR ASP GLN TRP GLU GLU HET A8R A 501 40 HET A8R B 501 40 HETNAM A8R (2S)-2-{5-[(5-{[(1S)-1-(4-TERT-BUTYLPHENYL) HETNAM 2 A8R ETHYL]CARBAMOYL}-2,3-DIMETHYL-1H-INDOL-1-YL)METHYL]-2- HETNAM 3 A8R CHLOROPHENOXY}PROPANOIC ACID FORMUL 5 A8R 2(C33 H37 CL N2 O4) FORMUL 7 HOH *191(H2 O) HELIX 1 AA1 ASN A 205 PHE A 226 1 22 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 GLU A 259 1 9 HELIX 4 AA4 GLU A 276 SER A 302 1 27 HELIX 5 AA5 ASP A 310 TYR A 320 1 11 HELIX 6 AA6 GLY A 321 SER A 332 1 12 HELIX 7 AA7 ARG A 350 SER A 355 1 6 HELIX 8 AA8 ARG A 357 ASP A 362 1 6 HELIX 9 AA9 MET A 364 ALA A 376 1 13 HELIX 10 AB1 ASP A 380 LEU A 393 1 14 HELIX 11 AB2 ASN A 402 HIS A 425 1 24 HELIX 12 AB3 GLN A 430 THR A 459 1 30 HELIX 13 AB4 GLU B 207 PHE B 226 1 20 HELIX 14 AB5 THR B 229 GLY B 239 1 11 HELIX 15 AB6 ASP B 251 LYS B 261 1 11 HELIX 16 AB7 GLU B 276 ILE B 303 1 28 HELIX 17 AB8 ASP B 310 TYR B 320 1 11 HELIX 18 AB9 GLY B 321 ALA B 331 1 11 HELIX 19 AC1 SER B 332 MET B 334 5 3 HELIX 20 AC2 ARG B 350 LYS B 354 1 5 HELIX 21 AC3 MET B 364 ALA B 376 1 13 HELIX 22 AC4 ASP B 380 LEU B 393 1 14 HELIX 23 AC5 ASN B 402 HIS B 425 1 24 HELIX 24 AC6 GLN B 430 GLN B 437 1 8 HELIX 25 AC7 GLN B 437 LEU B 452 1 16 HELIX 26 AC8 MET C 2339 MET C 2350 1 12 HELIX 27 AC9 LEU D 2341 LEU D 2349 1 9 SHEET 1 AA1 2 GLY A 338 ILE A 341 0 SHEET 2 AA1 2 GLY A 346 THR A 349 -1 O MET A 348 N VAL A 339 SHEET 1 AA2 3 PHE B 247 ILE B 249 0 SHEET 2 AA2 3 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 AA2 3 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 CRYST1 61.143 59.700 92.938 90.00 105.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016355 0.000000 0.004687 0.00000 SCALE2 0.000000 0.016750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011193 0.00000