HEADER HYDROLASE 15-NOV-21 7STU TITLE CRYSTAL STRUCTURE OF SULFATASE FROM PEDOBACTER YULINENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGALACTOSAMINE-6-SULFATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEDOBACTER YULINENSIS; SOURCE 3 ORGANISM_TAXID: 2126353; SOURCE 4 GENE: C7T94_09545; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.O'MALLEY,C.R.SCHLACHTER,L.L.GRIMES,J.J.TOMASHEK,A.L.LEE,M.CHRUSZCZ REVDAT 4 15-NOV-23 7STU 1 LINK REVDAT 3 18-OCT-23 7STU 1 REMARK REVDAT 2 02-FEB-22 7STU 1 JRNL REVDAT 1 26-JAN-22 7STU 0 JRNL AUTH C.R.SCHLACHTER,A.O'MALLEY,L.L.GRIMES,J.J.TOMASHEK, JRNL AUTH 2 M.CHRUSZCZ,L.A.LEE JRNL TITL PURIFICATION, CHARACTERIZATION, AND STRUCTURAL STUDIES OF A JRNL TITL 2 SULFATASE FROM PEDOBACTER YULINENSIS . JRNL REF MOLECULES V. 27 2021 JRNL REFN ESSN 1420-3049 JRNL PMID 35011319 JRNL DOI 10.3390/MOLECULES27010087 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.235 REMARK 3 FREE R VALUE TEST SET COUNT : 1205 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1553 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3495 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.13000 REMARK 3 B22 (A**2) : 1.13000 REMARK 3 B33 (A**2) : -3.66400 REMARK 3 B12 (A**2) : 0.56500 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.302 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.177 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3586 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3292 ; 0.002 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4862 ; 1.382 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7583 ; 1.331 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 6.433 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;31.014 ;22.335 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 576 ;12.440 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;11.544 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4142 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 868 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 811 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 85 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1758 ; 0.164 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 307 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 14 ; 0.139 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.236 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1779 ; 1.042 ; 2.486 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1778 ; 1.039 ; 2.485 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2222 ; 1.831 ; 3.726 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2223 ; 1.831 ; 3.728 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1807 ; 1.105 ; 2.580 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1808 ; 1.105 ; 2.581 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2640 ; 1.901 ; 3.811 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2640 ; 1.901 ; 3.811 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0224 18.6896 19.3851 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.1043 REMARK 3 T33: 0.0241 T12: -0.0163 REMARK 3 T13: -0.0184 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.5928 L22: 0.4738 REMARK 3 L33: 0.5364 L12: 0.0821 REMARK 3 L13: -0.1289 L23: 0.0821 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.0725 S13: -0.1076 REMARK 3 S21: 0.0271 S22: -0.0351 S23: -0.0193 REMARK 3 S31: 0.0679 S32: -0.0429 S33: 0.0078 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4504 14.1716 16.4800 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1274 REMARK 3 T33: 0.2025 T12: 0.0199 REMARK 3 T13: -0.0309 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.1167 L22: 0.9114 REMARK 3 L33: 1.0701 L12: 0.6602 REMARK 3 L13: 1.1357 L23: 0.0230 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: 0.0511 S13: -0.3739 REMARK 3 S21: 0.0115 S22: -0.0762 S23: -0.3301 REMARK 3 S31: 0.0474 S32: 0.0126 S33: 0.0973 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 261 A 344 REMARK 3 ORIGIN FOR THE GROUP (A): -24.7936 27.3520 9.6760 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.1647 REMARK 3 T33: 0.0058 T12: -0.0053 REMARK 3 T13: 0.0001 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.4097 L22: 0.7743 REMARK 3 L33: 0.9707 L12: 0.7196 REMARK 3 L13: 0.7083 L23: 0.3791 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: 0.1395 S13: 0.0267 REMARK 3 S21: -0.0748 S22: -0.0224 S23: -0.0175 REMARK 3 S31: 0.0239 S32: -0.0718 S33: 0.0401 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 345 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): -19.7573 43.9494 18.0476 REMARK 3 T TENSOR REMARK 3 T11: 0.0878 T22: 0.0949 REMARK 3 T33: 0.0285 T12: 0.0047 REMARK 3 T13: 0.0058 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 1.1359 L22: 0.7650 REMARK 3 L33: 0.6549 L12: -0.0284 REMARK 3 L13: -0.0288 L23: 0.0181 REMARK 3 S TENSOR REMARK 3 S11: 0.0921 S12: 0.0470 S13: 0.1336 REMARK 3 S21: -0.0052 S22: -0.0473 S23: -0.0804 REMARK 3 S31: -0.0970 S32: -0.0151 S33: -0.0448 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7STU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000261063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23149 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : 0.12800 REMARK 200 FOR THE DATA SET : 15.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.90700 REMARK 200 R SYM FOR SHELL (I) : 0.90700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7STT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M POTASSIUM BROMIDE, 30% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.19533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.59767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.59767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.19533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.59767 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 846 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 446 REMARK 465 GLU A 447 REMARK 465 LYS A 448 REMARK 465 LYS A 449 REMARK 465 LYS A 450 REMARK 465 PRO A 451 REMARK 465 GLY A 452 REMARK 465 SER A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 358 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 445 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 DDZ A 55 -77.31 -51.47 REMARK 500 PRO A 78 -167.32 -78.50 REMARK 500 TRP A 112 -69.72 -101.41 REMARK 500 ALA A 142 -128.90 53.85 REMARK 500 ASP A 145 109.14 -161.92 REMARK 500 ASP A 238 93.21 72.52 REMARK 500 ALA A 283 -54.75 -139.29 REMARK 500 ALA A 287 -127.99 49.98 REMARK 500 ALA A 291 -144.78 65.22 REMARK 500 THR A 294 -0.37 83.52 REMARK 500 ASN A 396 70.18 54.76 REMARK 500 ASP A 407 59.94 -149.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 916 DISTANCE = 5.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 509 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 15 OD1 REMARK 620 2 ASP A 16 OD1 85.8 REMARK 620 3 DDZ A 55 OG1 99.4 107.4 REMARK 620 4 ASP A 276 OD1 91.9 106.5 145.0 REMARK 620 5 ASP A 276 OD2 89.3 162.2 90.3 56.6 REMARK 620 6 ASN A 277 OD1 164.5 83.6 94.5 80.4 97.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 507 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 80 O REMARK 620 2 ASP A 80 OD1 63.9 REMARK 620 3 THR A 83 O 61.4 125.3 REMARK 620 4 HOH A 734 O 85.2 76.8 99.1 REMARK 620 5 HOH A 806 O 75.6 81.9 84.3 156.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 89 O REMARK 620 2 TYR A 92 O 86.2 REMARK 620 3 GLU A 97 OE1 169.9 103.8 REMARK 620 4 SER A 411 O 97.6 38.6 91.4 REMARK 620 5 HOH A 753 O 99.5 100.5 80.5 62.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 508 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 145 OD1 REMARK 620 2 ASP A 145 OD2 52.6 REMARK 620 3 PHE A 147 O 96.0 121.7 REMARK 620 4 PRO A 149 O 131.2 86.7 82.9 REMARK 620 5 HOH A 842 O 92.1 130.1 92.4 136.7 REMARK 620 N 1 2 3 4 DBREF1 7STU A 2 451 UNP A0A2T3HKC0_9SPHI DBREF2 7STU A A0A2T3HKC0 25 474 SEQADV 7STU MET A 1 UNP A0A2T3HKC INITIATING METHIONINE SEQADV 7STU DDZ A 55 UNP A0A2T3HKC CYS 78 CONFLICT SEQADV 7STU GLY A 452 UNP A0A2T3HKC EXPRESSION TAG SEQADV 7STU SER A 453 UNP A0A2T3HKC EXPRESSION TAG SEQADV 7STU HIS A 454 UNP A0A2T3HKC EXPRESSION TAG SEQADV 7STU HIS A 455 UNP A0A2T3HKC EXPRESSION TAG SEQADV 7STU HIS A 456 UNP A0A2T3HKC EXPRESSION TAG SEQADV 7STU HIS A 457 UNP A0A2T3HKC EXPRESSION TAG SEQADV 7STU HIS A 458 UNP A0A2T3HKC EXPRESSION TAG SEQADV 7STU HIS A 459 UNP A0A2T3HKC EXPRESSION TAG SEQRES 1 A 459 MET GLN GLY SER ARG LYS PRO ASN ILE ILE PHE ILE MET SEQRES 2 A 459 ALA ASP ASP LEU GLY TRP GLY GLU LEU GLY SER TYR GLY SEQRES 3 A 459 ASN THR PHE ASN GLU THR PRO ASN LEU ASP ARG LEU SER SEQRES 4 A 459 ALA GLN GLY MET ARG PHE THR GLN ALA TYR ALA ALA ALA SEQRES 5 A 459 PRO VAL DDZ SER PRO THR ARG ALA SER ILE MET THR GLY SEQRES 6 A 459 GLN TYR PRO ALA ARG VAL GLY ILE THR ASP PHE LEU PRO SEQRES 7 A 459 GLU ASP GLU LYS THR ASP ARG TRP LEU ASP PRO THR LYS SEQRES 8 A 459 TYR VAL THR LEU ASN GLU ALA LEU SER ALA SER GLY TYR SEQRES 9 A 459 HIS THR GLY ILE VAL GLY LYS TRP HIS LEU ASP THR ASP SEQRES 10 A 459 PHE LYS LEU ASN LYS GLY GLY PRO LYS ALA HIS GLY PHE SEQRES 11 A 459 ASN GLU VAL ILE GLY THR GLU SER GLU TYR ILE ALA ASP SEQRES 12 A 459 GLY ASP TYR PHE PHE PRO TYR SER LYS ILE ALA SER PHE SEQRES 13 A 459 ASP LYS GLY THR ALA ASN GLU TYR LEU THR ASP ARG GLN SEQRES 14 A 459 CYS ALA GLU ALA ASN ALA PHE ILE THR ARG ASN ARG GLU SEQRES 15 A 459 LYS PRO PHE PHE LEU TYR LEU SER LEU TYR SER VAL HIS SEQRES 16 A 459 THR ARG LEU GLU ALA PRO VAL GLN LEU VAL GLU LYS TYR SEQRES 17 A 459 LYS GLN LYS PHE ASP GLN LYS TYR GLY THR GLY LYS ALA SEQRES 18 A 459 GLU GLN PHE PHE GLY ALA ASN ASN VAL ARG HIS GLU SER SEQRES 19 A 459 ALA GLN ARG ASP ASN PRO TRP LEU ALA ALA MET LEU GLU SEQRES 20 A 459 SER ILE ASP THR GLY VAL GLY GLY ILE MET LYS THR LEU SEQRES 21 A 459 ARG GLU THR GLY LEU ALA GLU ASN THR ILE ILE VAL PHE SEQRES 22 A 459 PHE SER ASP ASN GLY GLY ALA GLY LYS ALA GLY ASN ASN SEQRES 23 A 459 ALA HIS LEU ARG ALA GLY LYS THR TRP LEU TYR GLU GLY SEQRES 24 A 459 GLY ILE ARG GLU PRO LEU ILE VAL SER TRP PRO GLY LYS SEQRES 25 A 459 ILE LYS GLY ASN THR VAL ASN ASP ASN PRO VAL THR SER SEQRES 26 A 459 LEU ASP PHE TYR PRO THR PHE LEU ALA ALA ALA GLY GLY SEQRES 27 A 459 LYS PRO THR GLY GLY ARG LEU ASP GLY HIS ASN LEU MET SEQRES 28 A 459 PRO LEU LEU ARG GLY GLY ARG ALA SER GLY ARG PRO LEU SEQRES 29 A 459 PHE TRP HIS TYR PRO SER GLU THR GLY LYS TRP VAL ASN SEQRES 30 A 459 ARG MET SER SER ALA VAL ARG GLU GLY ASN TYR LYS LEU SEQRES 31 A 459 LEU GLU PHE TYR ASN ASN PRO ARG LEU GLU LEU TYR ASP SEQRES 32 A 459 LEU GLN ASN ASP PRO SER GLU SER HIS ASN LEU ALA THR SEQRES 33 A 459 ASP ARG PRO ALA GLU THR ALA ARG LEU LYS LYS LEU LEU SEQRES 34 A 459 GLU ASP TRP LYS LYS GLU VAL ASN ALA GLU ALA PRO HIS SEQRES 35 A 459 LEU ALA ARG LYS GLU LYS LYS LYS PRO GLY SER HIS HIS SEQRES 36 A 459 HIS HIS HIS HIS HET DDZ A 55 7 HET BR A 501 1 HET BR A 502 1 HET BR A 503 1 HET BR A 504 1 HET BR A 505 1 HET NA A 506 1 HET NA A 507 1 HET NA A 508 1 HET CA A 509 1 HETNAM DDZ 3,3-DIHYDROXY L-ALANINE HETNAM BR BROMIDE ION HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETSYN DDZ 3-HYDROXY-L-SERINE FORMUL 1 DDZ C3 H7 N O4 FORMUL 2 BR 5(BR 1-) FORMUL 7 NA 3(NA 1+) FORMUL 10 CA CA 2+ FORMUL 11 HOH *316(H2 O) HELIX 1 AA1 LEU A 22 GLY A 26 5 5 HELIX 2 AA2 THR A 32 GLN A 41 1 10 HELIX 3 AA3 VAL A 54 GLY A 65 1 12 HELIX 4 AA4 TYR A 67 GLY A 72 1 6 HELIX 5 AA5 GLU A 79 THR A 83 5 5 HELIX 6 AA6 THR A 94 ALA A 101 1 8 HELIX 7 AA7 GLY A 124 GLY A 129 1 6 HELIX 8 AA8 TYR A 164 ASN A 180 1 17 HELIX 9 AA9 PRO A 201 GLY A 217 1 17 HELIX 10 AB1 GLY A 219 GLY A 226 1 8 HELIX 11 AB2 ASN A 239 THR A 263 1 25 HELIX 12 AB3 LEU A 265 GLU A 267 5 3 HELIX 13 AB4 TYR A 297 ILE A 301 1 5 HELIX 14 AB5 ASP A 327 ALA A 336 1 10 HELIX 15 AB6 LEU A 350 ARG A 355 1 6 HELIX 16 AB7 ARG A 418 VAL A 436 1 19 SHEET 1 AA1 8 GLU A 132 ILE A 134 0 SHEET 2 AA1 8 HIS A 105 GLY A 110 1 N ILE A 108 O ILE A 134 SHEET 3 AA1 8 PHE A 185 SER A 190 1 O TYR A 188 N GLY A 107 SHEET 4 AA1 8 ASN A 8 ALA A 14 1 N PHE A 11 O LEU A 189 SHEET 5 AA1 8 THR A 269 SER A 275 1 O VAL A 272 N ILE A 12 SHEET 6 AA1 8 ARG A 302 SER A 308 -1 O SER A 308 N ILE A 271 SHEET 7 AA1 8 MET A 43 TYR A 49 -1 N MET A 43 O VAL A 307 SHEET 8 AA1 8 THR A 317 ASN A 319 1 O ASN A 319 N ARG A 44 SHEET 1 AA2 8 GLU A 132 ILE A 134 0 SHEET 2 AA2 8 HIS A 105 GLY A 110 1 N ILE A 108 O ILE A 134 SHEET 3 AA2 8 PHE A 185 SER A 190 1 O TYR A 188 N GLY A 107 SHEET 4 AA2 8 ASN A 8 ALA A 14 1 N PHE A 11 O LEU A 189 SHEET 5 AA2 8 THR A 269 SER A 275 1 O VAL A 272 N ILE A 12 SHEET 6 AA2 8 ARG A 302 SER A 308 -1 O SER A 308 N ILE A 271 SHEET 7 AA2 8 MET A 43 TYR A 49 -1 N MET A 43 O VAL A 307 SHEET 8 AA2 8 VAL A 323 THR A 324 1 O VAL A 323 N TYR A 49 SHEET 1 AA3 4 LEU A 364 TYR A 368 0 SHEET 2 AA3 4 SER A 380 GLU A 385 -1 O SER A 380 N TYR A 368 SHEET 3 AA3 4 TYR A 388 PHE A 393 -1 O GLU A 392 N SER A 381 SHEET 4 AA3 4 ARG A 398 ASP A 403 -1 O GLU A 400 N LEU A 391 LINK C VAL A 54 N DDZ A 55 1555 1555 1.35 LINK C DDZ A 55 N SER A 56 1555 1555 1.35 LINK OD1 ASP A 15 CA CA A 509 1555 1555 2.21 LINK OD1 ASP A 16 CA CA A 509 1555 1555 2.35 LINK OG1 DDZ A 55 CA CA A 509 1555 1555 2.77 LINK O ASP A 80 NA NA A 507 1555 1555 3.00 LINK OD1 ASP A 80 NA NA A 507 1555 1555 2.30 LINK O THR A 83 NA NA A 507 1555 1555 2.34 LINK O PRO A 89 NA NA A 506 1555 1555 2.39 LINK O TYR A 92 NA NA A 506 1555 1555 2.27 LINK OE1 GLU A 97 NA NA A 506 1555 1555 2.33 LINK OD1 ASP A 145 NA NA A 508 1555 1555 2.50 LINK OD2 ASP A 145 NA NA A 508 1555 1555 2.45 LINK O PHE A 147 NA NA A 508 1555 1555 2.32 LINK O PRO A 149 NA NA A 508 1555 1555 2.37 LINK OD1 ASP A 276 CA CA A 509 1555 1555 2.52 LINK OD2 ASP A 276 CA CA A 509 1555 1555 2.18 LINK OD1 ASN A 277 CA CA A 509 1555 1555 2.40 LINK O SER A 411 NA NA A 506 1555 5665 2.17 LINK NA NA A 506 O HOH A 753 1555 1555 2.41 LINK NA NA A 507 O HOH A 734 1555 1555 2.70 LINK NA NA A 507 O HOH A 806 1555 1555 2.26 LINK NA NA A 508 O HOH A 842 1555 1555 2.12 CISPEP 1 PHE A 148 PRO A 149 0 -11.40 CISPEP 2 SER A 193 VAL A 194 0 11.62 CISPEP 3 THR A 196 ARG A 197 0 9.13 CRYST1 83.286 83.286 115.793 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012007 0.006932 0.000000 0.00000 SCALE2 0.000000 0.013864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008636 0.00000