HEADER DNA BINDING PROTEIN/DNA 21-NOV-21 7SWY TITLE 2.6 A STRUCTURE OF A 40-601[TA-RICH+1]-40 NUCLEOSOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3; COMPND 3 CHAIN: A, E; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H4; COMPND 8 CHAIN: B, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HISTONE H2A; COMPND 12 CHAIN: C, G; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: HISTONE H2B; COMPND 16 CHAIN: D, H; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: DNA TRACKING STRAND; COMPND 21 CHAIN: I; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 6; COMPND 24 MOLECULE: DNA GUIDE STRAND; COMPND 25 CHAIN: J; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: XELAEV_18002543MG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 10 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 11 ORGANISM_TAXID: 8355; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 16 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 17 ORGANISM_TAXID: 8355; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 22 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 23 ORGANISM_TAXID: 8355; SOURCE 24 GENE: XELAEV_18032686MG; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 27 MOL_ID: 5; SOURCE 28 SYNTHETIC: YES; SOURCE 29 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 30 ORGANISM_TAXID: 32630; SOURCE 31 MOL_ID: 6; SOURCE 32 SYNTHETIC: YES; SOURCE 33 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 34 ORGANISM_TAXID: 32630 KEYWDS CHD1, CHROMATIN REMODELING, ATPASE, DBD, NUCLEOSOME, REMODELING, KEYWDS 2 TRANSCRIPTION, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR I.M.NODELMAN,G.D.BOWMAN,J.-P.ARMACHE REVDAT 2 29-MAR-23 7SWY 1 REMARK REVDAT 1 02-MAR-22 7SWY 0 JRNL AUTH I.M.NODELMAN,S.DAS,A.M.FAUSTINO,S.D.FRIED,G.D.BOWMAN, JRNL AUTH 2 J.P.ARMACHE JRNL TITL NUCLEOSOME RECOGNITION AND DNA DISTORTION BY THE CHD1 JRNL TITL 2 REMODELER IN A NUCLEOTIDE-FREE STATE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 29 121 2022 JRNL REFN ESSN 1545-9985 JRNL PMID 35173352 JRNL DOI 10.1038/S41594-021-00719-X REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : LATITUDE, CRYOSPARC, UCSF CHIMERA, REMARK 3 COOT, CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3LZ0 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : PHENIX.REAL_SPACE_REFINE REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.600 REMARK 3 NUMBER OF PARTICLES : 823685 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7SWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1000261223. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : 40-601[TA-RICH+1]-40 NUCLEOSOME REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.80 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 6906 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4990.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : 46296 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 PRO A 38 REMARK 465 LEU A 48 REMARK 465 ALA A 135 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 GLY C 7 REMARK 465 GLY C 8 REMARK 465 LYS C 9 REMARK 465 THR C 10 REMARK 465 ARG C 11 REMARK 465 ALA C 12 REMARK 465 LYS C 13 REMARK 465 LYS C 119 REMARK 465 THR C 120 REMARK 465 GLU C 121 REMARK 465 SER C 122 REMARK 465 SER C 123 REMARK 465 LYS C 124 REMARK 465 SER C 125 REMARK 465 ALA C 126 REMARK 465 LYS C 127 REMARK 465 SER C 128 REMARK 465 LYS C 129 REMARK 465 ALA D 1 REMARK 465 LYS D 2 REMARK 465 SER D 3 REMARK 465 ALA D 4 REMARK 465 PRO D 5 REMARK 465 ALA D 6 REMARK 465 PRO D 7 REMARK 465 LYS D 8 REMARK 465 LYS D 9 REMARK 465 GLY D 10 REMARK 465 SER D 11 REMARK 465 LYS D 12 REMARK 465 LYS D 13 REMARK 465 ALA D 14 REMARK 465 VAL D 15 REMARK 465 THR D 16 REMARK 465 LYS D 17 REMARK 465 THR D 18 REMARK 465 GLN D 19 REMARK 465 LYS D 20 REMARK 465 LYS D 21 REMARK 465 ASP D 22 REMARK 465 GLY D 23 REMARK 465 LYS D 24 REMARK 465 LYS D 25 REMARK 465 LYS D 122 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 ALA E 135 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 SER G 1 REMARK 465 GLY G 2 REMARK 465 ARG G 3 REMARK 465 GLY G 4 REMARK 465 LYS G 5 REMARK 465 GLN G 6 REMARK 465 GLY G 7 REMARK 465 GLY G 8 REMARK 465 LYS G 9 REMARK 465 THR G 10 REMARK 465 ARG G 11 REMARK 465 ASN G 110 REMARK 465 ILE G 111 REMARK 465 GLN G 112 REMARK 465 SER G 113 REMARK 465 VAL G 114 REMARK 465 LEU G 115 REMARK 465 LEU G 116 REMARK 465 PRO G 117 REMARK 465 LYS G 118 REMARK 465 LYS G 119 REMARK 465 THR G 120 REMARK 465 GLU G 121 REMARK 465 SER G 122 REMARK 465 SER G 123 REMARK 465 LYS G 124 REMARK 465 SER G 125 REMARK 465 ALA G 126 REMARK 465 LYS G 127 REMARK 465 SER G 128 REMARK 465 LYS G 129 REMARK 465 ALA H 1 REMARK 465 LYS H 2 REMARK 465 SER H 3 REMARK 465 ALA H 4 REMARK 465 PRO H 5 REMARK 465 ALA H 6 REMARK 465 PRO H 7 REMARK 465 LYS H 8 REMARK 465 LYS H 9 REMARK 465 GLY H 10 REMARK 465 SER H 11 REMARK 465 LYS H 12 REMARK 465 LYS H 13 REMARK 465 ALA H 14 REMARK 465 VAL H 15 REMARK 465 THR H 16 REMARK 465 LYS H 17 REMARK 465 THR H 18 REMARK 465 GLN H 19 REMARK 465 LYS H 20 REMARK 465 LYS H 21 REMARK 465 ASP H 22 REMARK 465 GLY H 23 REMARK 465 LYS H 24 REMARK 465 LYS H 25 REMARK 465 ARG H 26 REMARK 465 ARG H 27 REMARK 465 LYS H 28 REMARK 465 THR H 29 REMARK 465 LYS H 122 REMARK 465 DA I -113 REMARK 465 DG I -112 REMARK 465 DT I -111 REMARK 465 DT I -110 REMARK 465 DC I -109 REMARK 465 DA I -108 REMARK 465 DT I -107 REMARK 465 DC I -106 REMARK 465 DC I -105 REMARK 465 DC I -104 REMARK 465 DT I -103 REMARK 465 DT I -102 REMARK 465 DA I -101 REMARK 465 DT I -100 REMARK 465 DG I -99 REMARK 465 DT I -98 REMARK 465 DG I -97 REMARK 465 DA I -96 REMARK 465 DT I -95 REMARK 465 DG I -94 REMARK 465 DG I -93 REMARK 465 DA I -92 REMARK 465 DC I -91 REMARK 465 DC I -90 REMARK 465 DC I -89 REMARK 465 DT I -88 REMARK 465 DA I -87 REMARK 465 DT I -86 REMARK 465 DA I -85 REMARK 465 DC I -84 REMARK 465 DG I -83 REMARK 465 DC I -82 REMARK 465 DG I -81 REMARK 465 DG I -80 REMARK 465 DC I -79 REMARK 465 DC I -78 REMARK 465 DG I -77 REMARK 465 DC I -76 REMARK 465 DC I -75 REMARK 465 DC I -74 REMARK 465 DT I -73 REMARK 465 DT I 71 REMARK 465 DG I 72 REMARK 465 DT I 73 REMARK 465 DG I 74 REMARK 465 DC I 75 REMARK 465 DA I 76 REMARK 465 DT I 77 REMARK 465 DG I 78 REMARK 465 DT I 79 REMARK 465 DA I 80 REMARK 465 DT I 81 REMARK 465 DT I 82 REMARK 465 DG I 83 REMARK 465 DA I 84 REMARK 465 DA I 85 REMARK 465 DC I 86 REMARK 465 DA I 87 REMARK 465 DG I 88 REMARK 465 DC I 89 REMARK 465 DG I 90 REMARK 465 DA I 91 REMARK 465 DC I 92 REMARK 465 DC I 93 REMARK 465 DT I 94 REMARK 465 DT I 95 REMARK 465 DG I 96 REMARK 465 DC I 97 REMARK 465 DC I 98 REMARK 465 DG I 99 REMARK 465 DG I 100 REMARK 465 DT I 101 REMARK 465 DG I 102 REMARK 465 DC I 103 REMARK 465 DC I 104 REMARK 465 DA I 105 REMARK 465 DG I 106 REMARK 465 DT I 107 REMARK 465 DC I 108 REMARK 465 DG I 109 REMARK 465 DG I 110 REMARK 465 DA I 111 REMARK 465 DT I 112 REMARK 465 DA J -112 REMARK 465 DT J -111 REMARK 465 DC J -110 REMARK 465 DC J -109 REMARK 465 DG J -108 REMARK 465 DA J -107 REMARK 465 DC J -106 REMARK 465 DT J -105 REMARK 465 DG J -104 REMARK 465 DG J -103 REMARK 465 DC J -102 REMARK 465 DA J -101 REMARK 465 DC J -100 REMARK 465 DC J -99 REMARK 465 DG J -98 REMARK 465 DG J -97 REMARK 465 DC J -96 REMARK 465 DA J -95 REMARK 465 DA J -94 REMARK 465 DG J -93 REMARK 465 DG J -92 REMARK 465 DT J -91 REMARK 465 DC J -90 REMARK 465 DG J -89 REMARK 465 DC J -88 REMARK 465 DT J -87 REMARK 465 DG J -86 REMARK 465 DT J -85 REMARK 465 DT J -84 REMARK 465 DC J -83 REMARK 465 DA J -82 REMARK 465 DA J -81 REMARK 465 DT J -80 REMARK 465 DA J -79 REMARK 465 DC J -78 REMARK 465 DA J -77 REMARK 465 DT J -76 REMARK 465 DG J -75 REMARK 465 DC J -74 REMARK 465 DA J -73 REMARK 465 DC J -72 REMARK 465 DA J -71 REMARK 465 DA J 73 REMARK 465 DG J 74 REMARK 465 DG J 75 REMARK 465 DG J 76 REMARK 465 DC J 77 REMARK 465 DG J 78 REMARK 465 DG J 79 REMARK 465 DC J 80 REMARK 465 DC J 81 REMARK 465 DG J 82 REMARK 465 DC J 83 REMARK 465 DG J 84 REMARK 465 DT J 85 REMARK 465 DA J 86 REMARK 465 DT J 87 REMARK 465 DA J 88 REMARK 465 DG J 89 REMARK 465 DG J 90 REMARK 465 DG J 91 REMARK 465 DT J 92 REMARK 465 DC J 93 REMARK 465 DC J 94 REMARK 465 DA J 95 REMARK 465 DT J 96 REMARK 465 DC J 97 REMARK 465 DA J 98 REMARK 465 DC J 99 REMARK 465 DA J 100 REMARK 465 DT J 101 REMARK 465 DA J 102 REMARK 465 DA J 103 REMARK 465 DG J 104 REMARK 465 DG J 105 REMARK 465 DG J 106 REMARK 465 DA J 107 REMARK 465 DT J 108 REMARK 465 DG J 109 REMARK 465 DA J 110 REMARK 465 DA J 111 REMARK 465 DC J 112 REMARK 465 DT J 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 VAL B 21 CG1 CG2 REMARK 470 ARG B 23 CG CD NE CZ NH1 NH2 REMARK 470 ALA C 14 CB REMARK 470 LYS C 118 CG CD CE NZ REMARK 470 ARG E 134 CG CD NE CZ NH1 NH2 REMARK 470 HIS F 18 CG ND1 CD2 CE1 NE2 REMARK 470 ARG F 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 20 CG CD CE NZ REMARK 470 ARG F 23 CG CD NE CZ NH1 NH2 REMARK 470 DG I -72 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG I -25 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC I 6 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC J 56 O3' - P - OP2 ANGL. DEV. = -22.6 DEGREES REMARK 500 DC J 56 O3' - P - OP1 ANGL. DEV. = -22.2 DEGREES REMARK 500 DC J 56 OP1 - P - OP2 ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 23 -116.79 -121.10 REMARK 500 LYS B 44 -63.49 -93.52 REMARK 500 LEU C 97 48.66 -108.35 REMARK 500 PRO E 43 109.86 -59.99 REMARK 500 GLN E 76 0.15 -66.48 REMARK 500 ARG F 19 -155.90 56.97 REMARK 500 LYS G 36 32.61 -94.73 REMARK 500 LEU G 97 54.97 -100.72 REMARK 500 ASP H 48 70.59 -119.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-25479 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-25480 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-25481 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-25483 RELATED DB: EMDB DBREF1 7SWY A 1 135 UNP A0A310TTQ1_XENLA DBREF2 7SWY A A0A310TTQ1 2 136 DBREF 7SWY B 1 102 UNP P62799 H4_XENLA 2 103 DBREF 7SWY C 1 129 UNP P06897 H2A1_XENLA 2 130 DBREF1 7SWY D 1 122 UNP A0A1L8FQ56_XENLA DBREF2 7SWY D A0A1L8FQ56 5 126 DBREF1 7SWY E 1 135 UNP A0A310TTQ1_XENLA DBREF2 7SWY E A0A310TTQ1 2 136 DBREF 7SWY F 1 102 UNP P62799 H4_XENLA 2 103 DBREF 7SWY G 1 129 UNP P06897 H2A1_XENLA 2 130 DBREF1 7SWY H 1 122 UNP A0A1L8FQ56_XENLA DBREF2 7SWY H A0A1L8FQ56 5 126 DBREF 7SWY I -113 112 PDB 7SWY 7SWY -113 112 DBREF 7SWY J -112 113 PDB 7SWY 7SWY -112 113 SEQADV 7SWY ALA A 110 UNP A0A310TTQ CYS 111 ENGINEERED MUTATION SEQADV 7SWY ARG C 99 UNP P06897 GLY 100 ENGINEERED MUTATION SEQADV 7SWY SER C 123 UNP P06897 ALA 124 ENGINEERED MUTATION SEQADV 7SWY PRO D 7 UNP A0A1L8FQ5 ALA 11 CONFLICT SEQADV 7SWY CYS D 53 UNP A0A1L8FQ5 SER 57 ENGINEERED MUTATION SEQADV 7SWY ALA E 110 UNP A0A310TTQ CYS 111 ENGINEERED MUTATION SEQADV 7SWY ARG G 99 UNP P06897 GLY 100 ENGINEERED MUTATION SEQADV 7SWY SER G 123 UNP P06897 ALA 124 ENGINEERED MUTATION SEQADV 7SWY PRO H 7 UNP A0A1L8FQ5 ALA 11 CONFLICT SEQADV 7SWY CYS H 53 UNP A0A1L8FQ5 SER 57 ENGINEERED MUTATION SEQRES 1 A 135 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 A 135 LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA ARG SEQRES 3 A 135 LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO HIS SEQRES 4 A 135 ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE ARG SEQRES 5 A 135 ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS LEU SEQRES 6 A 135 PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP PHE SEQRES 7 A 135 LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET ALA SEQRES 8 A 135 LEU GLN GLU ALA SER GLU ALA TYR LEU VAL ALA LEU PHE SEQRES 9 A 135 GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG VAL SEQRES 10 A 135 THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG ILE SEQRES 11 A 135 ARG GLY GLU ARG ALA SEQRES 1 B 102 SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS GLY SEQRES 2 B 102 GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN ILE SEQRES 3 B 102 GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA ARG SEQRES 4 B 102 ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR GLU SEQRES 5 B 102 GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN VAL SEQRES 6 B 102 ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS ARG SEQRES 7 B 102 LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU LYS SEQRES 8 B 102 ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 129 SER GLY ARG GLY LYS GLN GLY GLY LYS THR ARG ALA LYS SEQRES 2 C 129 ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE PRO SEQRES 3 C 129 VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 4 C 129 ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 5 C 129 ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU LEU SEQRES 6 C 129 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 7 C 129 ILE PRO ARG HIS LEU GLN LEU ALA VAL ARG ASN ASP GLU SEQRES 8 C 129 GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA GLN SEQRES 9 C 129 GLY GLY VAL LEU PRO ASN ILE GLN SER VAL LEU LEU PRO SEQRES 10 C 129 LYS LYS THR GLU SER SER LYS SER ALA LYS SER LYS SEQRES 1 D 122 ALA LYS SER ALA PRO ALA PRO LYS LYS GLY SER LYS LYS SEQRES 2 D 122 ALA VAL THR LYS THR GLN LYS LYS ASP GLY LYS LYS ARG SEQRES 3 D 122 ARG LYS THR ARG LYS GLU SER TYR ALA ILE TYR VAL TYR SEQRES 4 D 122 LYS VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SEQRES 5 D 122 CYS LYS ALA MET SER ILE MET ASN SER PHE VAL ASN ASP SEQRES 6 D 122 VAL PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA SEQRES 7 D 122 HIS TYR ASN LYS ARG SER THR ILE THR SER ARG GLU ILE SEQRES 8 D 122 GLN THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA SEQRES 9 D 122 LYS HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS SEQRES 10 D 122 TYR THR SER ALA LYS SEQRES 1 E 135 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 E 135 LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA ARG SEQRES 3 E 135 LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO HIS SEQRES 4 E 135 ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE ARG SEQRES 5 E 135 ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS LEU SEQRES 6 E 135 PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP PHE SEQRES 7 E 135 LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET ALA SEQRES 8 E 135 LEU GLN GLU ALA SER GLU ALA TYR LEU VAL ALA LEU PHE SEQRES 9 E 135 GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG VAL SEQRES 10 E 135 THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG ILE SEQRES 11 E 135 ARG GLY GLU ARG ALA SEQRES 1 F 102 SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS GLY SEQRES 2 F 102 GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN ILE SEQRES 3 F 102 GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA ARG SEQRES 4 F 102 ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR GLU SEQRES 5 F 102 GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN VAL SEQRES 6 F 102 ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS ARG SEQRES 7 F 102 LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU LYS SEQRES 8 F 102 ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 129 SER GLY ARG GLY LYS GLN GLY GLY LYS THR ARG ALA LYS SEQRES 2 G 129 ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE PRO SEQRES 3 G 129 VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 4 G 129 ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 5 G 129 ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU LEU SEQRES 6 G 129 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 7 G 129 ILE PRO ARG HIS LEU GLN LEU ALA VAL ARG ASN ASP GLU SEQRES 8 G 129 GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA GLN SEQRES 9 G 129 GLY GLY VAL LEU PRO ASN ILE GLN SER VAL LEU LEU PRO SEQRES 10 G 129 LYS LYS THR GLU SER SER LYS SER ALA LYS SER LYS SEQRES 1 H 122 ALA LYS SER ALA PRO ALA PRO LYS LYS GLY SER LYS LYS SEQRES 2 H 122 ALA VAL THR LYS THR GLN LYS LYS ASP GLY LYS LYS ARG SEQRES 3 H 122 ARG LYS THR ARG LYS GLU SER TYR ALA ILE TYR VAL TYR SEQRES 4 H 122 LYS VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SEQRES 5 H 122 CYS LYS ALA MET SER ILE MET ASN SER PHE VAL ASN ASP SEQRES 6 H 122 VAL PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA SEQRES 7 H 122 HIS TYR ASN LYS ARG SER THR ILE THR SER ARG GLU ILE SEQRES 8 H 122 GLN THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA SEQRES 9 H 122 LYS HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS SEQRES 10 H 122 TYR THR SER ALA LYS SEQRES 1 I 226 DA DG DT DT DC DA DT DC DC DC DT DT DA SEQRES 2 I 226 DT DG DT DG DA DT DG DG DA DC DC DC DT SEQRES 3 I 226 DA DT DA DC DG DC DG DG DC DC DG DC DC SEQRES 4 I 226 DC DT DG DG DA DG DA DA DT DC DC DC DG SEQRES 5 I 226 DG DT DG DC DC DG DA DG DG DC DC DG DC SEQRES 6 I 226 DT DC DA DA DT DT DG DG DT DC DG DT DA SEQRES 7 I 226 DG DA DC DA DG DC DT DC DT DA DG DC DA SEQRES 8 I 226 DA DC DC DG DC DT DT DA DA DA DC DG DC SEQRES 9 I 226 DA DC DG DT DA DC DG DC DG DC DT DG DT SEQRES 10 I 226 DC DC DC DC DC DG DC DG DT DT DT DT DA SEQRES 11 I 226 DA DC DC DG DC DC DA DA DG DG DG DG DA SEQRES 12 I 226 DT DT DA DC DT DC DC DC DT DA DG DT DC SEQRES 13 I 226 DT DC DC DA DG DG DC DA DC DG DT DG DT SEQRES 14 I 226 DC DA DG DA DT DA DT DA DT DA DC DA DT SEQRES 15 I 226 DC DC DT DG DT DG DC DA DT DG DT DA DT SEQRES 16 I 226 DT DG DA DA DC DA DG DC DG DA DC DC DT SEQRES 17 I 226 DT DG DC DC DG DG DT DG DC DC DA DG DT SEQRES 18 I 226 DC DG DG DA DT SEQRES 1 J 226 DA DT DC DC DG DA DC DT DG DG DC DA DC SEQRES 2 J 226 DC DG DG DC DA DA DG DG DT DC DG DC DT SEQRES 3 J 226 DG DT DT DC DA DA DT DA DC DA DT DG DC SEQRES 4 J 226 DA DC DA DG DG DA DT DG DT DA DT DA DT SEQRES 5 J 226 DA DT DC DT DG DA DC DA DC DG DT DG DC SEQRES 6 J 226 DC DT DG DG DA DG DA DC DT DA DG DG DG SEQRES 7 J 226 DA DG DT DA DA DT DC DC DC DC DT DT DG SEQRES 8 J 226 DG DC DG DG DT DT DA DA DA DA DC DG DC SEQRES 9 J 226 DG DG DG DG DG DA DC DA DG DC DG DC DG SEQRES 10 J 226 DT DA DC DG DT DG DC DG DT DT DT DA DA SEQRES 11 J 226 DG DC DG DG DT DT DG DC DT DA DG DA DG SEQRES 12 J 226 DC DT DG DT DC DT DA DC DG DA DC DC DA SEQRES 13 J 226 DA DT DT DG DA DG DC DG DG DC DC DT DC SEQRES 14 J 226 DG DG DC DA DC DC DG DG DG DA DT DT DC SEQRES 15 J 226 DT DC DC DA DG DG DG DC DG DG DC DC DG SEQRES 16 J 226 DC DG DT DA DT DA DG DG DG DT DC DC DA SEQRES 17 J 226 DT DC DA DC DA DT DA DA DG DG DG DA DT SEQRES 18 J 226 DG DA DA DC DT HELIX 1 AA1 GLU A 50 SER A 57 1 8 HELIX 2 AA2 ARG A 63 GLN A 76 1 14 HELIX 3 AA3 GLN A 85 ALA A 114 1 30 HELIX 4 AA4 MET A 120 GLY A 132 1 13 HELIX 5 AA5 ASN B 25 ILE B 29 5 5 HELIX 6 AA6 THR B 30 GLY B 41 1 12 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 THR B 82 ARG B 92 1 11 HELIX 9 AA9 THR C 16 GLY C 22 1 7 HELIX 10 AB1 PRO C 26 GLY C 37 1 12 HELIX 11 AB2 GLY C 46 ASP C 72 1 27 HELIX 12 AB3 ILE C 79 ASN C 89 1 11 HELIX 13 AB4 GLU C 92 LEU C 97 1 6 HELIX 14 AB5 GLN C 112 LEU C 116 5 5 HELIX 15 AB6 TYR D 34 HIS D 46 1 13 HELIX 16 AB7 SER D 52 ASN D 81 1 30 HELIX 17 AB8 THR D 87 LEU D 99 1 13 HELIX 18 AB9 GLY D 101 SER D 120 1 20 HELIX 19 AC1 GLY E 44 SER E 57 1 14 HELIX 20 AC2 ARG E 63 GLN E 76 1 14 HELIX 21 AC3 GLN E 85 ALA E 114 1 30 HELIX 22 AC4 MET E 120 ARG E 131 1 12 HELIX 23 AC5 ASN F 25 ILE F 29 5 5 HELIX 24 AC6 THR F 30 GLY F 41 1 12 HELIX 25 AC7 LEU F 49 ALA F 76 1 28 HELIX 26 AC8 THR F 82 ARG F 92 1 11 HELIX 27 AC9 THR G 16 ALA G 21 1 6 HELIX 28 AD1 PRO G 26 LYS G 36 1 11 HELIX 29 AD2 GLY G 46 ASN G 73 1 28 HELIX 30 AD3 ILE G 79 ASP G 90 1 12 HELIX 31 AD4 ASP G 90 LEU G 97 1 8 HELIX 32 AD5 TYR H 34 HIS H 46 1 13 HELIX 33 AD6 SER H 52 ASN H 81 1 30 HELIX 34 AD7 THR H 87 LEU H 99 1 13 HELIX 35 AD8 GLY H 101 SER H 120 1 20 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA2 2 THR A 118 ILE A 119 0 SHEET 2 AA2 2 ARG B 45 ILE B 46 1 O ARG B 45 N ILE A 119 SHEET 1 AA3 2 THR B 96 TYR B 98 0 SHEET 2 AA3 2 VAL G 100 ILE G 102 1 O THR G 101 N TYR B 98 SHEET 1 AA4 2 ARG C 42 VAL C 43 0 SHEET 2 AA4 2 THR D 85 ILE D 86 1 O ILE D 86 N ARG C 42 SHEET 1 AA5 2 ARG C 77 ILE C 78 0 SHEET 2 AA5 2 GLY D 50 ILE D 51 1 O GLY D 50 N ILE C 78 SHEET 1 AA6 2 VAL C 100 ILE C 102 0 SHEET 2 AA6 2 THR F 96 TYR F 98 1 O TYR F 98 N THR C 101 SHEET 1 AA7 2 ARG E 83 PHE E 84 0 SHEET 2 AA7 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA8 2 THR E 118 ILE E 119 0 SHEET 2 AA8 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 SHEET 1 AA9 2 ARG G 42 VAL G 43 0 SHEET 2 AA9 2 THR H 85 ILE H 86 1 O ILE H 86 N ARG G 42 SHEET 1 AB1 2 ARG G 77 ILE G 78 0 SHEET 2 AB1 2 GLY H 50 ILE H 51 1 O GLY H 50 N ILE G 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000