data_7T01 # _entry.id 7T01 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7T01 pdb_00007t01 10.2210/pdb7t01/pdb WWPDB D_1000261309 ? ? EMDB EMD-25574 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'SARS-CoV-2 S-RBD + Fab 54042-4' _pdbx_database_related.db_id EMD-25574 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7T01 _pdbx_database_status.recvd_initial_deposition_date 2021-11-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Johnson, N.V.' 1 0000-0003-4351-125X 'Mclellan, J.S.' 2 0000-0003-3991-542X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 37 _citation.language ? _citation.page_first 109784 _citation.page_last 109784 _citation.title ;Potent neutralization of SARS-CoV-2 variants of concern by an antibody with an uncommon genetic signature and structural mode of spike recognition. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2021.109784 _citation.pdbx_database_id_PubMed 34592170 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kramer, K.J.' 1 ? primary 'Johnson, N.V.' 2 ? primary 'Shiakolas, A.R.' 3 ? primary 'Suryadevara, N.' 4 ? primary 'Periasamy, S.' 5 ? primary 'Raju, N.' 6 ? primary 'Williams, J.K.' 7 ? primary 'Wrapp, D.' 8 ? primary 'Zost, S.J.' 9 ? primary 'Walker, L.M.' 10 ? primary 'Wall, S.C.' 11 ? primary 'Holt, C.M.' 12 ? primary 'Hsieh, C.L.' 13 ? primary 'Sutton, R.E.' 14 ? primary 'Paulo, A.' 15 ? primary 'Nargi, R.S.' 16 ? primary 'Davidson, E.' 17 ? primary 'Doranz, B.J.' 18 ? primary 'Crowe Jr., J.E.' 19 ? primary 'Bukreyev, A.' 20 ? primary 'Carnahan, R.H.' 21 ? primary 'McLellan, J.S.' 22 ? primary 'Georgiev, I.S.' 23 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7T01 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 22603.408 1 ? ? ? ? 2 polymer man '54042-4 Fab - Heavy Chain' 13145.856 1 ? ? ? ? 3 polymer man '54042-4 Fab - Light Chain' 11734.157 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVR QIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNC YFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKK ; ;FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVR QIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNC YFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKK ; A ? 2 'polypeptide(L)' no no ;QITLKESGPTLVKPTQTLTLTCTFSGFSLSTIGVGVSWIRQPPGKALDWLALIYWDDDKRYSPSLKSRLTVTMDTSKNQV VLTLTNMDPVDTATYFCAHGLFSSSDWGGLDVWGQGTTVT ; ;QITLKESGPTLVKPTQTLTLTCTFSGFSLSTIGVGVSWIRQPPGKALDWLALIYWDDDKRYSPSLKSRLTVTMDTSKNQV VLTLTNMDPVDTATYFCAHGLFSSSDWGGLDVWGQGTTVT ; H ? 3 'polypeptide(L)' no no ;DMQMTQSPSSLSASVGDRVTITCRASQSVFTYLNWYQQKPGKAPKLLIYAASRLQSGVPSRFRGSGSGTDFTLTISSLQP EDFATYYCQQSHSTPFIFGPGTKVDIK ; ;DMQMTQSPSSLSASVGDRVTITCRASQSVFTYLNWYQQKPGKAPKLLIYAASRLQSGVPSRFRGSGSGTDFTLTISSLQP EDFATYYCQQSHSTPFIFGPGTKVDIK ; L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 PRO n 1 3 ASN n 1 4 ILE n 1 5 THR n 1 6 ASN n 1 7 LEU n 1 8 CYS n 1 9 PRO n 1 10 PHE n 1 11 GLY n 1 12 GLU n 1 13 VAL n 1 14 PHE n 1 15 ASN n 1 16 ALA n 1 17 THR n 1 18 ARG n 1 19 PHE n 1 20 ALA n 1 21 SER n 1 22 VAL n 1 23 TYR n 1 24 ALA n 1 25 TRP n 1 26 ASN n 1 27 ARG n 1 28 LYS n 1 29 ARG n 1 30 ILE n 1 31 SER n 1 32 ASN n 1 33 CYS n 1 34 VAL n 1 35 ALA n 1 36 ASP n 1 37 TYR n 1 38 SER n 1 39 VAL n 1 40 LEU n 1 41 TYR n 1 42 ASN n 1 43 SER n 1 44 ALA n 1 45 SER n 1 46 PHE n 1 47 SER n 1 48 THR n 1 49 PHE n 1 50 LYS n 1 51 CYS n 1 52 TYR n 1 53 GLY n 1 54 VAL n 1 55 SER n 1 56 PRO n 1 57 THR n 1 58 LYS n 1 59 LEU n 1 60 ASN n 1 61 ASP n 1 62 LEU n 1 63 CYS n 1 64 PHE n 1 65 THR n 1 66 ASN n 1 67 VAL n 1 68 TYR n 1 69 ALA n 1 70 ASP n 1 71 SER n 1 72 PHE n 1 73 VAL n 1 74 ILE n 1 75 ARG n 1 76 GLY n 1 77 ASP n 1 78 GLU n 1 79 VAL n 1 80 ARG n 1 81 GLN n 1 82 ILE n 1 83 ALA n 1 84 PRO n 1 85 GLY n 1 86 GLN n 1 87 THR n 1 88 GLY n 1 89 LYS n 1 90 ILE n 1 91 ALA n 1 92 ASP n 1 93 TYR n 1 94 ASN n 1 95 TYR n 1 96 LYS n 1 97 LEU n 1 98 PRO n 1 99 ASP n 1 100 ASP n 1 101 PHE n 1 102 THR n 1 103 GLY n 1 104 CYS n 1 105 VAL n 1 106 ILE n 1 107 ALA n 1 108 TRP n 1 109 ASN n 1 110 SER n 1 111 ASN n 1 112 ASN n 1 113 LEU n 1 114 ASP n 1 115 SER n 1 116 LYS n 1 117 VAL n 1 118 GLY n 1 119 GLY n 1 120 ASN n 1 121 TYR n 1 122 ASN n 1 123 TYR n 1 124 LEU n 1 125 TYR n 1 126 ARG n 1 127 LEU n 1 128 PHE n 1 129 ARG n 1 130 LYS n 1 131 SER n 1 132 ASN n 1 133 LEU n 1 134 LYS n 1 135 PRO n 1 136 PHE n 1 137 GLU n 1 138 ARG n 1 139 ASP n 1 140 ILE n 1 141 SER n 1 142 THR n 1 143 GLU n 1 144 ILE n 1 145 TYR n 1 146 GLN n 1 147 ALA n 1 148 GLY n 1 149 SER n 1 150 THR n 1 151 PRO n 1 152 CYS n 1 153 ASN n 1 154 GLY n 1 155 VAL n 1 156 GLU n 1 157 GLY n 1 158 PHE n 1 159 ASN n 1 160 CYS n 1 161 TYR n 1 162 PHE n 1 163 PRO n 1 164 LEU n 1 165 GLN n 1 166 SER n 1 167 TYR n 1 168 GLY n 1 169 PHE n 1 170 GLN n 1 171 PRO n 1 172 THR n 1 173 ASN n 1 174 GLY n 1 175 VAL n 1 176 GLY n 1 177 TYR n 1 178 GLN n 1 179 PRO n 1 180 TYR n 1 181 ARG n 1 182 VAL n 1 183 VAL n 1 184 VAL n 1 185 LEU n 1 186 SER n 1 187 PHE n 1 188 GLU n 1 189 LEU n 1 190 LEU n 1 191 HIS n 1 192 ALA n 1 193 PRO n 1 194 ALA n 1 195 THR n 1 196 VAL n 1 197 CYS n 1 198 GLY n 1 199 PRO n 1 200 LYS n 1 201 LYS n 2 1 GLN n 2 2 ILE n 2 3 THR n 2 4 LEU n 2 5 LYS n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 PRO n 2 10 THR n 2 11 LEU n 2 12 VAL n 2 13 LYS n 2 14 PRO n 2 15 THR n 2 16 GLN n 2 17 THR n 2 18 LEU n 2 19 THR n 2 20 LEU n 2 21 THR n 2 22 CYS n 2 23 THR n 2 24 PHE n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 SER n 2 29 LEU n 2 30 SER n 2 31 THR n 2 32 ILE n 2 33 GLY n 2 34 VAL n 2 35 GLY n 2 36 VAL n 2 37 SER n 2 38 TRP n 2 39 ILE n 2 40 ARG n 2 41 GLN n 2 42 PRO n 2 43 PRO n 2 44 GLY n 2 45 LYS n 2 46 ALA n 2 47 LEU n 2 48 ASP n 2 49 TRP n 2 50 LEU n 2 51 ALA n 2 52 LEU n 2 53 ILE n 2 54 TYR n 2 55 TRP n 2 56 ASP n 2 57 ASP n 2 58 ASP n 2 59 LYS n 2 60 ARG n 2 61 TYR n 2 62 SER n 2 63 PRO n 2 64 SER n 2 65 LEU n 2 66 LYS n 2 67 SER n 2 68 ARG n 2 69 LEU n 2 70 THR n 2 71 VAL n 2 72 THR n 2 73 MET n 2 74 ASP n 2 75 THR n 2 76 SER n 2 77 LYS n 2 78 ASN n 2 79 GLN n 2 80 VAL n 2 81 VAL n 2 82 LEU n 2 83 THR n 2 84 LEU n 2 85 THR n 2 86 ASN n 2 87 MET n 2 88 ASP n 2 89 PRO n 2 90 VAL n 2 91 ASP n 2 92 THR n 2 93 ALA n 2 94 THR n 2 95 TYR n 2 96 PHE n 2 97 CYS n 2 98 ALA n 2 99 HIS n 2 100 GLY n 2 101 LEU n 2 102 PHE n 2 103 SER n 2 104 SER n 2 105 SER n 2 106 ASP n 2 107 TRP n 2 108 GLY n 2 109 GLY n 2 110 LEU n 2 111 ASP n 2 112 VAL n 2 113 TRP n 2 114 GLY n 2 115 GLN n 2 116 GLY n 2 117 THR n 2 118 THR n 2 119 VAL n 2 120 THR n 3 1 ASP n 3 2 MET n 3 3 GLN n 3 4 MET n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 SER n 3 10 SER n 3 11 LEU n 3 12 SER n 3 13 ALA n 3 14 SER n 3 15 VAL n 3 16 GLY n 3 17 ASP n 3 18 ARG n 3 19 VAL n 3 20 THR n 3 21 ILE n 3 22 THR n 3 23 CYS n 3 24 ARG n 3 25 ALA n 3 26 SER n 3 27 GLN n 3 28 SER n 3 29 VAL n 3 30 PHE n 3 31 THR n 3 32 TYR n 3 33 LEU n 3 34 ASN n 3 35 TRP n 3 36 TYR n 3 37 GLN n 3 38 GLN n 3 39 LYS n 3 40 PRO n 3 41 GLY n 3 42 LYS n 3 43 ALA n 3 44 PRO n 3 45 LYS n 3 46 LEU n 3 47 LEU n 3 48 ILE n 3 49 TYR n 3 50 ALA n 3 51 ALA n 3 52 SER n 3 53 ARG n 3 54 LEU n 3 55 GLN n 3 56 SER n 3 57 GLY n 3 58 VAL n 3 59 PRO n 3 60 SER n 3 61 ARG n 3 62 PHE n 3 63 ARG n 3 64 GLY n 3 65 SER n 3 66 GLY n 3 67 SER n 3 68 GLY n 3 69 THR n 3 70 ASP n 3 71 PHE n 3 72 THR n 3 73 LEU n 3 74 THR n 3 75 ILE n 3 76 SER n 3 77 SER n 3 78 LEU n 3 79 GLN n 3 80 PRO n 3 81 GLU n 3 82 ASP n 3 83 PHE n 3 84 ALA n 3 85 THR n 3 86 TYR n 3 87 TYR n 3 88 CYS n 3 89 GLN n 3 90 GLN n 3 91 SER n 3 92 HIS n 3 93 SER n 3 94 THR n 3 95 PRO n 3 96 PHE n 3 97 ILE n 3 98 PHE n 3 99 GLY n 3 100 PRO n 3 101 GLY n 3 102 THR n 3 103 LYS n 3 104 VAL n 3 105 ASP n 3 106 ILE n 3 107 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 201 '2019-nCoV, SARS-CoV-2' ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 120 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 107 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVR QIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNC YFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKK ; 329 2 PDB 7T01 7T01 ? 2 ? 1 3 PDB 7T01 7T01 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7T01 A 1 ? 201 ? P0DTC2 329 ? 529 ? 329 529 2 2 7T01 H 1 ? 120 ? 7T01 1 ? 120 ? 1 120 3 3 7T01 L 1 ? 107 ? 7T01 1 ? 107 ? 1 107 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7T01 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7T01 _struct.title 'SARS-CoV-2 S-RBD + Fab 54042-4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7T01 _struct_keywords.text 'SARS-CoV-2, 54042-4, RBD, Fab, complex, viral protein-immune system, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 10 ? ASN A 15 ? PHE A 338 ASN A 343 1 ? 6 HELX_P HELX_P2 AA2 SER A 21 ? TRP A 25 ? SER A 349 TRP A 353 5 ? 5 HELX_P HELX_P3 AA3 TYR A 37 ? ASN A 42 ? TYR A 365 ASN A 370 1 ? 6 HELX_P HELX_P4 AA4 THR A 57 ? LEU A 62 ? THR A 385 LEU A 390 5 ? 6 HELX_P HELX_P5 AA5 ASP A 77 ? ILE A 82 ? ASP A 405 ILE A 410 5 ? 6 HELX_P HELX_P6 AA6 GLY A 88 ? ASN A 94 ? GLY A 416 ASN A 422 1 ? 7 HELX_P HELX_P7 AA7 SER A 110 ? SER A 115 ? SER A 438 SER A 443 1 ? 6 HELX_P HELX_P8 AA8 PRO B 63 ? LYS B 66 ? PRO H 63 LYS H 66 5 ? 4 HELX_P HELX_P9 AA9 ASP B 88 ? THR B 92 ? ASP H 88 THR H 92 5 ? 5 HELX_P HELX_P10 AB1 GLN C 79 ? PHE C 83 ? GLN L 79 PHE L 83 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 51 SG ? ? ? 1_555 A CYS 104 SG ? ? A CYS 379 A CYS 432 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 152 SG ? ? ? 1_555 A CYS 160 SG ? ? A CYS 480 A CYS 488 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 97 SG ? ? H CYS 22 H CYS 97 1_555 ? ? ? ? ? ? ? 2.040 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 4 ? AA6 ? 5 ? AA7 ? 5 ? AA8 ? 4 ? AA9 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA7 4 5 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AA9 4 5 ? anti-parallel AA9 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 26 ? ILE A 30 ? ASN A 354 ILE A 358 AA1 2 ASN A 66 ? ARG A 75 ? ASN A 394 ARG A 403 AA1 3 PRO A 179 ? GLU A 188 ? PRO A 507 GLU A 516 AA1 4 GLY A 103 ? ASN A 109 ? GLY A 431 ASN A 437 AA1 5 CYS A 51 ? TYR A 52 ? CYS A 379 TYR A 380 AA2 1 CYS A 33 ? VAL A 34 ? CYS A 361 VAL A 362 AA2 2 VAL A 196 ? CYS A 197 ? VAL A 524 CYS A 525 AA3 1 LEU A 124 ? ARG A 126 ? LEU A 452 ARG A 454 AA3 2 LEU A 164 ? SER A 166 ? LEU A 492 SER A 494 AA4 1 TYR A 145 ? GLN A 146 ? TYR A 473 GLN A 474 AA4 2 CYS A 160 ? TYR A 161 ? CYS A 488 TYR A 489 AA5 1 LEU B 4 ? SER B 7 ? LEU H 4 SER H 7 AA5 2 LEU B 20 ? SER B 25 ? LEU H 20 SER H 25 AA5 3 GLN B 79 ? LEU B 84 ? GLN H 79 LEU H 84 AA5 4 LEU B 69 ? ASP B 74 ? LEU H 69 ASP H 74 AA6 1 LYS B 59 ? TYR B 61 ? LYS H 59 TYR H 61 AA6 2 ASP B 48 ? TYR B 54 ? ASP H 48 TYR H 54 AA6 3 VAL B 34 ? GLN B 41 ? VAL H 34 GLN H 41 AA6 4 THR B 94 ? LEU B 101 ? THR H 94 LEU H 101 AA6 5 VAL B 112 ? TRP B 113 ? VAL H 112 TRP H 113 AA7 1 LYS B 59 ? TYR B 61 ? LYS H 59 TYR H 61 AA7 2 ASP B 48 ? TYR B 54 ? ASP H 48 TYR H 54 AA7 3 VAL B 34 ? GLN B 41 ? VAL H 34 GLN H 41 AA7 4 THR B 94 ? LEU B 101 ? THR H 94 LEU H 101 AA7 5 THR B 117 ? THR B 118 ? THR H 117 THR H 118 AA8 1 MET C 4 ? GLN C 6 ? MET L 4 GLN L 6 AA8 2 VAL C 19 ? ALA C 25 ? VAL L 19 ALA L 25 AA8 3 ASP C 70 ? ILE C 75 ? ASP L 70 ILE L 75 AA8 4 PHE C 62 ? SER C 67 ? PHE L 62 SER L 67 AA9 1 SER C 10 ? SER C 12 ? SER L 10 SER L 12 AA9 2 THR C 102 ? ASP C 105 ? THR L 102 ASP L 105 AA9 3 THR C 85 ? GLN C 90 ? THR L 85 GLN L 90 AA9 4 LEU C 33 ? GLN C 38 ? LEU L 33 GLN L 38 AA9 5 LYS C 45 ? ALA C 50 ? LYS L 45 ALA L 50 AA9 6 ARG C 53 ? LEU C 54 ? ARG L 53 LEU L 54 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 28 ? N LYS A 356 O ALA A 69 ? O ALA A 397 AA1 2 3 N PHE A 72 ? N PHE A 400 O VAL A 182 ? O VAL A 510 AA1 3 4 O VAL A 183 ? O VAL A 511 N ILE A 106 ? N ILE A 434 AA1 4 5 O GLY A 103 ? O GLY A 431 N TYR A 52 ? N TYR A 380 AA2 1 2 N CYS A 33 ? N CYS A 361 O CYS A 197 ? O CYS A 525 AA3 1 2 N TYR A 125 ? N TYR A 453 O GLN A 165 ? O GLN A 493 AA4 1 2 N TYR A 145 ? N TYR A 473 O TYR A 161 ? O TYR A 489 AA5 1 2 N GLU B 6 ? N GLU H 6 O THR B 23 ? O THR H 23 AA5 2 3 N CYS B 22 ? N CYS H 22 O VAL B 80 ? O VAL H 80 AA5 3 4 O VAL B 81 ? O VAL H 81 N THR B 72 ? N THR H 72 AA6 1 2 O ARG B 60 ? O ARG H 60 N LEU B 52 ? N LEU H 52 AA6 2 3 O ASP B 48 ? O ASP H 48 N ARG B 40 ? N ARG H 40 AA6 3 4 N ILE B 39 ? N ILE H 39 O PHE B 96 ? O PHE H 96 AA6 4 5 N HIS B 99 ? N HIS H 99 O VAL B 112 ? O VAL H 112 AA7 1 2 O ARG B 60 ? O ARG H 60 N LEU B 52 ? N LEU H 52 AA7 2 3 O ASP B 48 ? O ASP H 48 N ARG B 40 ? N ARG H 40 AA7 3 4 N ILE B 39 ? N ILE H 39 O PHE B 96 ? O PHE H 96 AA7 4 5 N TYR B 95 ? N TYR H 95 O THR B 117 ? O THR H 117 AA8 1 2 N THR C 5 ? N THR L 5 O ARG C 24 ? O ARG L 24 AA8 2 3 N ILE C 21 ? N ILE L 21 O LEU C 73 ? O LEU L 73 AA8 3 4 O THR C 72 ? O THR L 72 N SER C 65 ? N SER L 65 AA9 1 2 N LEU C 11 ? N LEU L 11 O ASP C 105 ? O ASP L 105 AA9 2 3 O THR C 102 ? O THR L 102 N TYR C 86 ? N TYR L 86 AA9 3 4 O TYR C 87 ? O TYR L 87 N TYR C 36 ? N TYR L 36 AA9 4 5 N GLN C 37 ? N GLN L 37 O LYS C 45 ? O LYS L 45 AA9 5 6 N ALA C 50 ? N ALA L 50 O ARG C 53 ? O ARG L 53 # _atom_sites.entry_id 7T01 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 329 329 PHE PHE A . n A 1 2 PRO 2 330 330 PRO PRO A . n A 1 3 ASN 3 331 331 ASN ASN A . n A 1 4 ILE 4 332 332 ILE ILE A . n A 1 5 THR 5 333 333 THR THR A . n A 1 6 ASN 6 334 334 ASN ASN A . n A 1 7 LEU 7 335 335 LEU LEU A . n A 1 8 CYS 8 336 336 CYS CYS A . n A 1 9 PRO 9 337 337 PRO PRO A . n A 1 10 PHE 10 338 338 PHE PHE A . n A 1 11 GLY 11 339 339 GLY GLY A . n A 1 12 GLU 12 340 340 GLU GLU A . n A 1 13 VAL 13 341 341 VAL VAL A . n A 1 14 PHE 14 342 342 PHE PHE A . n A 1 15 ASN 15 343 343 ASN ASN A . n A 1 16 ALA 16 344 344 ALA ALA A . n A 1 17 THR 17 345 345 THR THR A . n A 1 18 ARG 18 346 346 ARG ARG A . n A 1 19 PHE 19 347 347 PHE PHE A . n A 1 20 ALA 20 348 348 ALA ALA A . n A 1 21 SER 21 349 349 SER SER A . n A 1 22 VAL 22 350 350 VAL VAL A . n A 1 23 TYR 23 351 351 TYR TYR A . n A 1 24 ALA 24 352 352 ALA ALA A . n A 1 25 TRP 25 353 353 TRP TRP A . n A 1 26 ASN 26 354 354 ASN ASN A . n A 1 27 ARG 27 355 355 ARG ARG A . n A 1 28 LYS 28 356 356 LYS LYS A . n A 1 29 ARG 29 357 357 ARG ARG A . n A 1 30 ILE 30 358 358 ILE ILE A . n A 1 31 SER 31 359 359 SER SER A . n A 1 32 ASN 32 360 360 ASN ASN A . n A 1 33 CYS 33 361 361 CYS CYS A . n A 1 34 VAL 34 362 362 VAL VAL A . n A 1 35 ALA 35 363 363 ALA ALA A . n A 1 36 ASP 36 364 364 ASP ASP A . n A 1 37 TYR 37 365 365 TYR TYR A . n A 1 38 SER 38 366 366 SER SER A . n A 1 39 VAL 39 367 367 VAL VAL A . n A 1 40 LEU 40 368 368 LEU LEU A . n A 1 41 TYR 41 369 369 TYR TYR A . n A 1 42 ASN 42 370 370 ASN ASN A . n A 1 43 SER 43 371 371 SER SER A . n A 1 44 ALA 44 372 372 ALA ALA A . n A 1 45 SER 45 373 373 SER SER A . n A 1 46 PHE 46 374 374 PHE PHE A . n A 1 47 SER 47 375 375 SER SER A . n A 1 48 THR 48 376 376 THR THR A . n A 1 49 PHE 49 377 377 PHE PHE A . n A 1 50 LYS 50 378 378 LYS LYS A . n A 1 51 CYS 51 379 379 CYS CYS A . n A 1 52 TYR 52 380 380 TYR TYR A . n A 1 53 GLY 53 381 381 GLY GLY A . n A 1 54 VAL 54 382 382 VAL VAL A . n A 1 55 SER 55 383 383 SER SER A . n A 1 56 PRO 56 384 384 PRO PRO A . n A 1 57 THR 57 385 385 THR THR A . n A 1 58 LYS 58 386 386 LYS LYS A . n A 1 59 LEU 59 387 387 LEU LEU A . n A 1 60 ASN 60 388 388 ASN ASN A . n A 1 61 ASP 61 389 389 ASP ASP A . n A 1 62 LEU 62 390 390 LEU LEU A . n A 1 63 CYS 63 391 391 CYS CYS A . n A 1 64 PHE 64 392 392 PHE PHE A . n A 1 65 THR 65 393 393 THR THR A . n A 1 66 ASN 66 394 394 ASN ASN A . n A 1 67 VAL 67 395 395 VAL VAL A . n A 1 68 TYR 68 396 396 TYR TYR A . n A 1 69 ALA 69 397 397 ALA ALA A . n A 1 70 ASP 70 398 398 ASP ASP A . n A 1 71 SER 71 399 399 SER SER A . n A 1 72 PHE 72 400 400 PHE PHE A . n A 1 73 VAL 73 401 401 VAL VAL A . n A 1 74 ILE 74 402 402 ILE ILE A . n A 1 75 ARG 75 403 403 ARG ARG A . n A 1 76 GLY 76 404 404 GLY GLY A . n A 1 77 ASP 77 405 405 ASP ASP A . n A 1 78 GLU 78 406 406 GLU GLU A . n A 1 79 VAL 79 407 407 VAL VAL A . n A 1 80 ARG 80 408 408 ARG ARG A . n A 1 81 GLN 81 409 409 GLN GLN A . n A 1 82 ILE 82 410 410 ILE ILE A . n A 1 83 ALA 83 411 411 ALA ALA A . n A 1 84 PRO 84 412 412 PRO PRO A . n A 1 85 GLY 85 413 413 GLY GLY A . n A 1 86 GLN 86 414 414 GLN GLN A . n A 1 87 THR 87 415 415 THR THR A . n A 1 88 GLY 88 416 416 GLY GLY A . n A 1 89 LYS 89 417 417 LYS LYS A . n A 1 90 ILE 90 418 418 ILE ILE A . n A 1 91 ALA 91 419 419 ALA ALA A . n A 1 92 ASP 92 420 420 ASP ASP A . n A 1 93 TYR 93 421 421 TYR TYR A . n A 1 94 ASN 94 422 422 ASN ASN A . n A 1 95 TYR 95 423 423 TYR TYR A . n A 1 96 LYS 96 424 424 LYS LYS A . n A 1 97 LEU 97 425 425 LEU LEU A . n A 1 98 PRO 98 426 426 PRO PRO A . n A 1 99 ASP 99 427 427 ASP ASP A . n A 1 100 ASP 100 428 428 ASP ASP A . n A 1 101 PHE 101 429 429 PHE PHE A . n A 1 102 THR 102 430 430 THR THR A . n A 1 103 GLY 103 431 431 GLY GLY A . n A 1 104 CYS 104 432 432 CYS CYS A . n A 1 105 VAL 105 433 433 VAL VAL A . n A 1 106 ILE 106 434 434 ILE ILE A . n A 1 107 ALA 107 435 435 ALA ALA A . n A 1 108 TRP 108 436 436 TRP TRP A . n A 1 109 ASN 109 437 437 ASN ASN A . n A 1 110 SER 110 438 438 SER SER A . n A 1 111 ASN 111 439 439 ASN ASN A . n A 1 112 ASN 112 440 440 ASN ASN A . n A 1 113 LEU 113 441 441 LEU LEU A . n A 1 114 ASP 114 442 442 ASP ASP A . n A 1 115 SER 115 443 443 SER SER A . n A 1 116 LYS 116 444 444 LYS LYS A . n A 1 117 VAL 117 445 445 VAL VAL A . n A 1 118 GLY 118 446 446 GLY GLY A . n A 1 119 GLY 119 447 447 GLY GLY A . n A 1 120 ASN 120 448 448 ASN ASN A . n A 1 121 TYR 121 449 449 TYR TYR A . n A 1 122 ASN 122 450 450 ASN ASN A . n A 1 123 TYR 123 451 451 TYR TYR A . n A 1 124 LEU 124 452 452 LEU LEU A . n A 1 125 TYR 125 453 453 TYR TYR A . n A 1 126 ARG 126 454 454 ARG ARG A . n A 1 127 LEU 127 455 455 LEU LEU A . n A 1 128 PHE 128 456 456 PHE PHE A . n A 1 129 ARG 129 457 457 ARG ARG A . n A 1 130 LYS 130 458 458 LYS LYS A . n A 1 131 SER 131 459 459 SER SER A . n A 1 132 ASN 132 460 460 ASN ASN A . n A 1 133 LEU 133 461 461 LEU LEU A . n A 1 134 LYS 134 462 462 LYS LYS A . n A 1 135 PRO 135 463 463 PRO PRO A . n A 1 136 PHE 136 464 464 PHE PHE A . n A 1 137 GLU 137 465 465 GLU GLU A . n A 1 138 ARG 138 466 466 ARG ARG A . n A 1 139 ASP 139 467 467 ASP ASP A . n A 1 140 ILE 140 468 468 ILE ILE A . n A 1 141 SER 141 469 469 SER SER A . n A 1 142 THR 142 470 470 THR THR A . n A 1 143 GLU 143 471 471 GLU GLU A . n A 1 144 ILE 144 472 472 ILE ILE A . n A 1 145 TYR 145 473 473 TYR TYR A . n A 1 146 GLN 146 474 474 GLN GLN A . n A 1 147 ALA 147 475 475 ALA ALA A . n A 1 148 GLY 148 476 476 GLY GLY A . n A 1 149 SER 149 477 477 SER SER A . n A 1 150 THR 150 478 478 THR THR A . n A 1 151 PRO 151 479 479 PRO PRO A . n A 1 152 CYS 152 480 480 CYS CYS A . n A 1 153 ASN 153 481 481 ASN ASN A . n A 1 154 GLY 154 482 482 GLY GLY A . n A 1 155 VAL 155 483 483 VAL VAL A . n A 1 156 GLU 156 484 484 GLU GLU A . n A 1 157 GLY 157 485 485 GLY GLY A . n A 1 158 PHE 158 486 486 PHE PHE A . n A 1 159 ASN 159 487 487 ASN ASN A . n A 1 160 CYS 160 488 488 CYS CYS A . n A 1 161 TYR 161 489 489 TYR TYR A . n A 1 162 PHE 162 490 490 PHE PHE A . n A 1 163 PRO 163 491 491 PRO PRO A . n A 1 164 LEU 164 492 492 LEU LEU A . n A 1 165 GLN 165 493 493 GLN GLN A . n A 1 166 SER 166 494 494 SER SER A . n A 1 167 TYR 167 495 495 TYR TYR A . n A 1 168 GLY 168 496 496 GLY GLY A . n A 1 169 PHE 169 497 497 PHE PHE A . n A 1 170 GLN 170 498 498 GLN GLN A . n A 1 171 PRO 171 499 499 PRO PRO A . n A 1 172 THR 172 500 500 THR THR A . n A 1 173 ASN 173 501 501 ASN ASN A . n A 1 174 GLY 174 502 502 GLY GLY A . n A 1 175 VAL 175 503 503 VAL VAL A . n A 1 176 GLY 176 504 504 GLY GLY A . n A 1 177 TYR 177 505 505 TYR TYR A . n A 1 178 GLN 178 506 506 GLN GLN A . n A 1 179 PRO 179 507 507 PRO PRO A . n A 1 180 TYR 180 508 508 TYR TYR A . n A 1 181 ARG 181 509 509 ARG ARG A . n A 1 182 VAL 182 510 510 VAL VAL A . n A 1 183 VAL 183 511 511 VAL VAL A . n A 1 184 VAL 184 512 512 VAL VAL A . n A 1 185 LEU 185 513 513 LEU LEU A . n A 1 186 SER 186 514 514 SER SER A . n A 1 187 PHE 187 515 515 PHE PHE A . n A 1 188 GLU 188 516 516 GLU GLU A . n A 1 189 LEU 189 517 517 LEU LEU A . n A 1 190 LEU 190 518 518 LEU LEU A . n A 1 191 HIS 191 519 519 HIS HIS A . n A 1 192 ALA 192 520 520 ALA ALA A . n A 1 193 PRO 193 521 521 PRO PRO A . n A 1 194 ALA 194 522 522 ALA ALA A . n A 1 195 THR 195 523 523 THR THR A . n A 1 196 VAL 196 524 524 VAL VAL A . n A 1 197 CYS 197 525 525 CYS CYS A . n A 1 198 GLY 198 526 526 GLY GLY A . n A 1 199 PRO 199 527 527 PRO PRO A . n A 1 200 LYS 200 528 528 LYS LYS A . n A 1 201 LYS 201 529 529 LYS LYS A . n B 2 1 GLN 1 1 1 GLN GLN H . n B 2 2 ILE 2 2 2 ILE ILE H . n B 2 3 THR 3 3 3 THR THR H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 LYS 5 5 5 LYS LYS H . n B 2 6 GLU 6 6 6 GLU GLU H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 PRO 9 9 9 PRO PRO H . n B 2 10 THR 10 10 10 THR THR H . n B 2 11 LEU 11 11 11 LEU LEU H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 LYS 13 13 13 LYS LYS H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 THR 15 15 15 THR THR H . n B 2 16 GLN 16 16 16 GLN GLN H . n B 2 17 THR 17 17 17 THR THR H . n B 2 18 LEU 18 18 18 LEU LEU H . n B 2 19 THR 19 19 19 THR THR H . n B 2 20 LEU 20 20 20 LEU LEU H . n B 2 21 THR 21 21 21 THR THR H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 THR 23 23 23 THR THR H . n B 2 24 PHE 24 24 24 PHE PHE H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 PHE 27 27 27 PHE PHE H . n B 2 28 SER 28 28 28 SER SER H . n B 2 29 LEU 29 29 29 LEU LEU H . n B 2 30 SER 30 30 30 SER SER H . n B 2 31 THR 31 31 31 THR THR H . n B 2 32 ILE 32 32 32 ILE ILE H . n B 2 33 GLY 33 33 33 GLY GLY H . n B 2 34 VAL 34 34 34 VAL VAL H . n B 2 35 GLY 35 35 35 GLY GLY H . n B 2 36 VAL 36 36 36 VAL VAL H . n B 2 37 SER 37 37 37 SER SER H . n B 2 38 TRP 38 38 38 TRP TRP H . n B 2 39 ILE 39 39 39 ILE ILE H . n B 2 40 ARG 40 40 40 ARG ARG H . n B 2 41 GLN 41 41 41 GLN GLN H . n B 2 42 PRO 42 42 42 PRO PRO H . n B 2 43 PRO 43 43 43 PRO PRO H . n B 2 44 GLY 44 44 44 GLY GLY H . n B 2 45 LYS 45 45 45 LYS LYS H . n B 2 46 ALA 46 46 46 ALA ALA H . n B 2 47 LEU 47 47 47 LEU LEU H . n B 2 48 ASP 48 48 48 ASP ASP H . n B 2 49 TRP 49 49 49 TRP TRP H . n B 2 50 LEU 50 50 50 LEU LEU H . n B 2 51 ALA 51 51 51 ALA ALA H . n B 2 52 LEU 52 52 52 LEU LEU H . n B 2 53 ILE 53 53 53 ILE ILE H . n B 2 54 TYR 54 54 54 TYR TYR H . n B 2 55 TRP 55 55 55 TRP TRP H . n B 2 56 ASP 56 56 56 ASP ASP H . n B 2 57 ASP 57 57 57 ASP ASP H . n B 2 58 ASP 58 58 58 ASP ASP H . n B 2 59 LYS 59 59 59 LYS LYS H . n B 2 60 ARG 60 60 60 ARG ARG H . n B 2 61 TYR 61 61 61 TYR TYR H . n B 2 62 SER 62 62 62 SER SER H . n B 2 63 PRO 63 63 63 PRO PRO H . n B 2 64 SER 64 64 64 SER SER H . n B 2 65 LEU 65 65 65 LEU LEU H . n B 2 66 LYS 66 66 66 LYS LYS H . n B 2 67 SER 67 67 67 SER SER H . n B 2 68 ARG 68 68 68 ARG ARG H . n B 2 69 LEU 69 69 69 LEU LEU H . n B 2 70 THR 70 70 70 THR THR H . n B 2 71 VAL 71 71 71 VAL VAL H . n B 2 72 THR 72 72 72 THR THR H . n B 2 73 MET 73 73 73 MET MET H . n B 2 74 ASP 74 74 74 ASP ASP H . n B 2 75 THR 75 75 75 THR THR H . n B 2 76 SER 76 76 76 SER SER H . n B 2 77 LYS 77 77 77 LYS LYS H . n B 2 78 ASN 78 78 78 ASN ASN H . n B 2 79 GLN 79 79 79 GLN GLN H . n B 2 80 VAL 80 80 80 VAL VAL H . n B 2 81 VAL 81 81 81 VAL VAL H . n B 2 82 LEU 82 82 82 LEU LEU H . n B 2 83 THR 83 83 83 THR THR H . n B 2 84 LEU 84 84 84 LEU LEU H . n B 2 85 THR 85 85 85 THR THR H . n B 2 86 ASN 86 86 86 ASN ASN H . n B 2 87 MET 87 87 87 MET MET H . n B 2 88 ASP 88 88 88 ASP ASP H . n B 2 89 PRO 89 89 89 PRO PRO H . n B 2 90 VAL 90 90 90 VAL VAL H . n B 2 91 ASP 91 91 91 ASP ASP H . n B 2 92 THR 92 92 92 THR THR H . n B 2 93 ALA 93 93 93 ALA ALA H . n B 2 94 THR 94 94 94 THR THR H . n B 2 95 TYR 95 95 95 TYR TYR H . n B 2 96 PHE 96 96 96 PHE PHE H . n B 2 97 CYS 97 97 97 CYS CYS H . n B 2 98 ALA 98 98 98 ALA ALA H . n B 2 99 HIS 99 99 99 HIS HIS H . n B 2 100 GLY 100 100 100 GLY GLY H . n B 2 101 LEU 101 101 101 LEU LEU H . n B 2 102 PHE 102 102 102 PHE PHE H . n B 2 103 SER 103 103 103 SER SER H . n B 2 104 SER 104 104 104 SER SER H . n B 2 105 SER 105 105 105 SER SER H . n B 2 106 ASP 106 106 106 ASP ASP H . n B 2 107 TRP 107 107 107 TRP TRP H . n B 2 108 GLY 108 108 108 GLY GLY H . n B 2 109 GLY 109 109 109 GLY GLY H . n B 2 110 LEU 110 110 110 LEU LEU H . n B 2 111 ASP 111 111 111 ASP ASP H . n B 2 112 VAL 112 112 112 VAL VAL H . n B 2 113 TRP 113 113 113 TRP TRP H . n B 2 114 GLY 114 114 114 GLY GLY H . n B 2 115 GLN 115 115 115 GLN GLN H . n B 2 116 GLY 116 116 116 GLY GLY H . n B 2 117 THR 117 117 117 THR THR H . n B 2 118 THR 118 118 118 THR THR H . n B 2 119 VAL 119 119 119 VAL VAL H . n B 2 120 THR 120 120 120 THR THR H . n C 3 1 ASP 1 1 1 ASP ASP L . n C 3 2 MET 2 2 2 MET MET L . n C 3 3 GLN 3 3 3 GLN GLN L . n C 3 4 MET 4 4 4 MET MET L . n C 3 5 THR 5 5 5 THR THR L . n C 3 6 GLN 6 6 6 GLN GLN L . n C 3 7 SER 7 7 7 SER SER L . n C 3 8 PRO 8 8 8 PRO PRO L . n C 3 9 SER 9 9 9 SER SER L . n C 3 10 SER 10 10 10 SER SER L . n C 3 11 LEU 11 11 11 LEU LEU L . n C 3 12 SER 12 12 12 SER SER L . n C 3 13 ALA 13 13 13 ALA ALA L . n C 3 14 SER 14 14 14 SER SER L . n C 3 15 VAL 15 15 15 VAL VAL L . n C 3 16 GLY 16 16 16 GLY GLY L . n C 3 17 ASP 17 17 17 ASP ASP L . n C 3 18 ARG 18 18 18 ARG ARG L . n C 3 19 VAL 19 19 19 VAL VAL L . n C 3 20 THR 20 20 20 THR THR L . n C 3 21 ILE 21 21 21 ILE ILE L . n C 3 22 THR 22 22 22 THR THR L . n C 3 23 CYS 23 23 23 CYS CYS L . n C 3 24 ARG 24 24 24 ARG ARG L . n C 3 25 ALA 25 25 25 ALA ALA L . n C 3 26 SER 26 26 26 SER SER L . n C 3 27 GLN 27 27 27 GLN GLN L . n C 3 28 SER 28 28 28 SER SER L . n C 3 29 VAL 29 29 29 VAL VAL L . n C 3 30 PHE 30 30 30 PHE PHE L . n C 3 31 THR 31 31 31 THR THR L . n C 3 32 TYR 32 32 32 TYR TYR L . n C 3 33 LEU 33 33 33 LEU LEU L . n C 3 34 ASN 34 34 34 ASN ASN L . n C 3 35 TRP 35 35 35 TRP TRP L . n C 3 36 TYR 36 36 36 TYR TYR L . n C 3 37 GLN 37 37 37 GLN GLN L . n C 3 38 GLN 38 38 38 GLN GLN L . n C 3 39 LYS 39 39 39 LYS LYS L . n C 3 40 PRO 40 40 40 PRO PRO L . n C 3 41 GLY 41 41 41 GLY GLY L . n C 3 42 LYS 42 42 42 LYS LYS L . n C 3 43 ALA 43 43 43 ALA ALA L . n C 3 44 PRO 44 44 44 PRO PRO L . n C 3 45 LYS 45 45 45 LYS LYS L . n C 3 46 LEU 46 46 46 LEU LEU L . n C 3 47 LEU 47 47 47 LEU LEU L . n C 3 48 ILE 48 48 48 ILE ILE L . n C 3 49 TYR 49 49 49 TYR TYR L . n C 3 50 ALA 50 50 50 ALA ALA L . n C 3 51 ALA 51 51 51 ALA ALA L . n C 3 52 SER 52 52 52 SER SER L . n C 3 53 ARG 53 53 53 ARG ARG L . n C 3 54 LEU 54 54 54 LEU LEU L . n C 3 55 GLN 55 55 55 GLN GLN L . n C 3 56 SER 56 56 56 SER SER L . n C 3 57 GLY 57 57 57 GLY GLY L . n C 3 58 VAL 58 58 58 VAL VAL L . n C 3 59 PRO 59 59 59 PRO PRO L . n C 3 60 SER 60 60 60 SER SER L . n C 3 61 ARG 61 61 61 ARG ARG L . n C 3 62 PHE 62 62 62 PHE PHE L . n C 3 63 ARG 63 63 63 ARG ARG L . n C 3 64 GLY 64 64 64 GLY GLY L . n C 3 65 SER 65 65 65 SER SER L . n C 3 66 GLY 66 66 66 GLY GLY L . n C 3 67 SER 67 67 67 SER SER L . n C 3 68 GLY 68 68 68 GLY GLY L . n C 3 69 THR 69 69 69 THR THR L . n C 3 70 ASP 70 70 70 ASP ASP L . n C 3 71 PHE 71 71 71 PHE PHE L . n C 3 72 THR 72 72 72 THR THR L . n C 3 73 LEU 73 73 73 LEU LEU L . n C 3 74 THR 74 74 74 THR THR L . n C 3 75 ILE 75 75 75 ILE ILE L . n C 3 76 SER 76 76 76 SER SER L . n C 3 77 SER 77 77 77 SER SER L . n C 3 78 LEU 78 78 78 LEU LEU L . n C 3 79 GLN 79 79 79 GLN GLN L . n C 3 80 PRO 80 80 80 PRO PRO L . n C 3 81 GLU 81 81 81 GLU GLU L . n C 3 82 ASP 82 82 82 ASP ASP L . n C 3 83 PHE 83 83 83 PHE PHE L . n C 3 84 ALA 84 84 84 ALA ALA L . n C 3 85 THR 85 85 85 THR THR L . n C 3 86 TYR 86 86 86 TYR TYR L . n C 3 87 TYR 87 87 87 TYR TYR L . n C 3 88 CYS 88 88 88 CYS CYS L . n C 3 89 GLN 89 89 89 GLN GLN L . n C 3 90 GLN 90 90 90 GLN GLN L . n C 3 91 SER 91 91 91 SER SER L . n C 3 92 HIS 92 92 92 HIS HIS L . n C 3 93 SER 93 93 93 SER SER L . n C 3 94 THR 94 94 94 THR THR L . n C 3 95 PRO 95 95 95 PRO PRO L . n C 3 96 PHE 96 96 96 PHE PHE L . n C 3 97 ILE 97 97 97 ILE ILE L . n C 3 98 PHE 98 98 98 PHE PHE L . n C 3 99 GLY 99 99 99 GLY GLY L . n C 3 100 PRO 100 100 100 PRO PRO L . n C 3 101 GLY 101 101 101 GLY GLY L . n C 3 102 THR 102 102 102 THR THR L . n C 3 103 LYS 103 103 103 LYS LYS L . n C 3 104 VAL 104 104 104 VAL VAL L . n C 3 105 ASP 105 105 105 ASP ASP L . n C 3 106 ILE 106 106 106 ILE ILE L . n C 3 107 LYS 107 107 107 LYS LYS L . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email jmclellan@austin.utexas.edu _pdbx_contact_author.name_first Jason _pdbx_contact_author.name_last McLellan _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3991-542X # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-04-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _em_3d_fitting.entry_id 7T01 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7T01 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 214408 _em_3d_reconstruction.resolution 2.69 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Complex of SARS-CoV-2 S-ECD with 54042-4 Fab' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7T01 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2.5 _em_imaging.nominal_defocus_min 1.5 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 295 _em_vitrification.cryogen_name ETHANE _em_vitrification.details '-4 force, 3 s blot' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7T01 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7T01 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 H _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 29 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 H _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 29 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 H _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 29 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.39 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 14.09 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 337 ? ? -72.88 42.99 2 1 THR H 15 ? ? -91.09 54.89 3 1 ASN H 86 ? ? -160.53 115.20 4 1 PHE L 30 ? ? 55.11 -126.13 5 1 SER L 52 ? ? 78.16 -0.57 6 1 SER L 77 ? ? -163.52 107.46 7 1 HIS L 92 ? ? -128.23 -59.51 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 2 mM Tris-Cl 'tris base' 1 2 200 mM NaCl 'sodium chloride' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 70 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 478385 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.5 _em_specimen.details 'Sample was monodisperse. All S proteins had 3 Fabs bound.' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01-AI127521 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #