HEADER VIRAL PROTEIN 01-DEC-21 7T14 TITLE HEXAMERIC SIVMAC CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN IMMUNODEFICIENCY VIRUS (MM251 ISOLATE); SOURCE 3 ORGANISM_TAXID: 11734; SOURCE 4 GENE: GAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CAPSID, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.A.JACQUES,L.C.JAMES REVDAT 3 18-OCT-23 7T14 1 REMARK REVDAT 2 09-NOV-22 7T14 1 JRNL REVDAT 1 19-OCT-22 7T14 0 JRNL AUTH L.ZULIANI-ALVAREZ,M.L.GOVASLI,J.RASAIYAAH,C.MONIT,S.O.PERRY, JRNL AUTH 2 R.P.SUMNER,S.MCALPINE-SCOTT,C.DICKSON,K.M.RIFAT FAYSAL, JRNL AUTH 3 L.HILDITCH,R.J.MILES,F.BIBOLLET-RUCHE,B.H.HAHN,T.BOECKING, JRNL AUTH 4 N.PINOTSIS,L.C.JAMES,D.A.JACQUES,G.J.TOWERS JRNL TITL EVASION OF CGAS AND TRIM5 DEFINES PANDEMIC HIV. JRNL REF NAT MICROBIOL V. 7 1762 2022 JRNL REFN ESSN 2058-5276 JRNL PMID 36289397 JRNL DOI 10.1038/S41564-022-01247-0 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 37920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1934 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4987 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 513 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.642 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5095 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4813 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6940 ; 0.906 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11057 ; 0.730 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 643 ; 4.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;36.417 ;25.365 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 832 ;12.265 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.614 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 774 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5886 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1135 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): 143.6180 -11.2839 -23.4208 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.0241 REMARK 3 T33: 0.1063 T12: 0.0023 REMARK 3 T13: 0.0090 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 2.4295 L22: 1.0883 REMARK 3 L33: 9.7784 L12: -0.0214 REMARK 3 L13: -2.1214 L23: 1.2814 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: 0.0221 S13: 0.1582 REMARK 3 S21: -0.0679 S22: 0.0169 S23: -0.0304 REMARK 3 S31: -0.1106 S32: 0.3540 S33: -0.0404 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 131.5089 -19.6973 -25.5575 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0453 REMARK 3 T33: 0.0956 T12: -0.0007 REMARK 3 T13: -0.0148 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.8984 L22: 1.1156 REMARK 3 L33: 3.0480 L12: 0.0363 REMARK 3 L13: -0.5110 L23: 0.1999 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: 0.1771 S13: 0.0161 REMARK 3 S21: -0.1862 S22: -0.0224 S23: 0.1249 REMARK 3 S31: 0.1373 S32: -0.2214 S33: 0.0577 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 115.5364 3.4963 -2.4043 REMARK 3 T TENSOR REMARK 3 T11: 0.0089 T22: 0.0227 REMARK 3 T33: 0.0690 T12: 0.0074 REMARK 3 T13: 0.0108 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 2.3395 L22: 3.1895 REMARK 3 L33: 1.6990 L12: -1.1137 REMARK 3 L13: -0.3211 L23: 0.7558 REMARK 3 S TENSOR REMARK 3 S11: -0.0974 S12: -0.1417 S13: -0.0751 REMARK 3 S21: 0.1545 S22: 0.0953 S23: 0.1488 REMARK 3 S31: 0.0545 S32: -0.0576 S33: 0.0021 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): 90.6975 -47.5211 7.7488 REMARK 3 T TENSOR REMARK 3 T11: 0.0235 T22: 0.0246 REMARK 3 T33: 0.1152 T12: -0.0050 REMARK 3 T13: 0.0164 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.8787 L22: 1.7019 REMARK 3 L33: 10.8577 L12: 0.6754 REMARK 3 L13: -1.5889 L23: -3.1560 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.0722 S13: 0.0618 REMARK 3 S21: 0.0695 S22: -0.0089 S23: 0.0640 REMARK 3 S31: -0.0544 S32: -0.2771 S33: 0.0005 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 105.4674 -47.2954 9.5015 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.0568 REMARK 3 T33: 0.1551 T12: -0.0059 REMARK 3 T13: -0.0492 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.0007 L22: 1.4531 REMARK 3 L33: 2.4417 L12: -0.4344 REMARK 3 L13: -0.3184 L23: -0.5890 REMARK 3 S TENSOR REMARK 3 S11: -0.0835 S12: -0.1730 S13: 0.0505 REMARK 3 S21: 0.2882 S22: -0.0639 S23: -0.1757 REMARK 3 S31: -0.0163 S32: 0.2197 S33: 0.1474 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 142 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): 105.0802 -19.6140 -13.3562 REMARK 3 T TENSOR REMARK 3 T11: 0.0445 T22: 0.0452 REMARK 3 T33: 0.1165 T12: -0.0205 REMARK 3 T13: 0.0212 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.9891 L22: 4.5063 REMARK 3 L33: 1.1309 L12: 0.5513 REMARK 3 L13: 0.0639 L23: -0.6590 REMARK 3 S TENSOR REMARK 3 S11: -0.0929 S12: -0.0291 S13: -0.0575 REMARK 3 S21: -0.3668 S22: -0.0083 S23: -0.2653 REMARK 3 S31: 0.0163 S32: 0.0076 S33: 0.1011 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 30 REMARK 3 ORIGIN FOR THE GROUP (A): 86.6574 -33.5227 7.8922 REMARK 3 T TENSOR REMARK 3 T11: 0.0350 T22: 0.0561 REMARK 3 T33: 0.1392 T12: 0.0028 REMARK 3 T13: 0.0378 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.6174 L22: 3.1064 REMARK 3 L33: 9.6203 L12: -0.5295 REMARK 3 L13: 2.5066 L23: -3.5221 REMARK 3 S TENSOR REMARK 3 S11: 0.0352 S12: -0.0506 S13: -0.0927 REMARK 3 S21: 0.0860 S22: -0.0601 S23: 0.1335 REMARK 3 S31: 0.2758 S32: 0.0432 S33: 0.0249 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 31 C 141 REMARK 3 ORIGIN FOR THE GROUP (A): 93.7791 -20.5922 9.9581 REMARK 3 T TENSOR REMARK 3 T11: 0.0717 T22: 0.0756 REMARK 3 T33: 0.1313 T12: -0.0148 REMARK 3 T13: -0.0146 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.8797 L22: 1.2996 REMARK 3 L33: 2.9451 L12: 0.2757 REMARK 3 L13: 0.0773 L23: -0.7480 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.1830 S13: 0.0772 REMARK 3 S21: 0.2871 S22: -0.0550 S23: -0.0306 REMARK 3 S31: -0.2665 S32: 0.1421 S33: 0.0425 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 142 C 217 REMARK 3 ORIGIN FOR THE GROUP (A): 68.0976 -8.2724 -14.7687 REMARK 3 T TENSOR REMARK 3 T11: 0.0371 T22: 0.0201 REMARK 3 T33: 0.1127 T12: 0.0138 REMARK 3 T13: 0.0238 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 6.6184 L22: 1.8917 REMARK 3 L33: 2.5254 L12: -1.9159 REMARK 3 L13: 0.0509 L23: -0.2198 REMARK 3 S TENSOR REMARK 3 S11: 0.1681 S12: 0.3161 S13: 0.3993 REMARK 3 S21: -0.0971 S22: -0.1551 S23: -0.1765 REMARK 3 S31: -0.1669 S32: -0.0346 S33: -0.0130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7T14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39855 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 29.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.72400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3H47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLANT: 10% (W/V) PEG 6000, 5% REMARK 280 (W/V) MPD, 100 MM HEPES (PH 7.5). CRYSTALS GREW IN 200 NL REMARK 280 PROTEIN (12 MG/ML) + 200 NL CRYSTALLANT. CRYOPROTECTED IN 20% (V/ REMARK 280 V) MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 229.65300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -132.59022 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 229.65300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 132.59022 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 306.20400 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 76.55100 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 132.59022 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 76.55100 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 -132.59022 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 76.55100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -132.59022 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 153.10200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 220 REMARK 465 GLY A 221 REMARK 465 PRO A 222 REMARK 465 GLY A 223 REMARK 465 GLN A 224 REMARK 465 LYS A 225 REMARK 465 ALA A 226 REMARK 465 ARG A 227 REMARK 465 LEU A 228 REMARK 465 MET A 229 REMARK 465 GLY B 220 REMARK 465 GLY B 221 REMARK 465 PRO B 222 REMARK 465 GLY B 223 REMARK 465 GLN B 224 REMARK 465 LYS B 225 REMARK 465 ALA B 226 REMARK 465 ARG B 227 REMARK 465 LEU B 228 REMARK 465 MET B 229 REMARK 465 GLN C 174 REMARK 465 THR C 175 REMARK 465 ASP C 176 REMARK 465 ALA C 177 REMARK 465 ALA C 178 REMARK 465 VAL C 179 REMARK 465 LYS C 180 REMARK 465 ASN C 181 REMARK 465 ALA C 182 REMARK 465 ALA C 183 REMARK 465 GLY C 220 REMARK 465 GLY C 221 REMARK 465 PRO C 222 REMARK 465 GLY C 223 REMARK 465 GLN C 224 REMARK 465 LYS C 225 REMARK 465 ALA C 226 REMARK 465 ARG C 227 REMARK 465 LEU C 228 REMARK 465 MET C 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 82 CG CD OE1 NE2 REMARK 470 GLN A 89 CG CD OE1 NE2 REMARK 470 GLN A 90 CG CD OE1 NE2 REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 470 GLN A 118 CG CD OE1 NE2 REMARK 470 ASN A 120 CG OD1 ND2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 GLN B 82 CG CD OE1 NE2 REMARK 470 GLN B 89 CG CD OE1 NE2 REMARK 470 GLN B 90 CG CD OE1 NE2 REMARK 470 GLN B 92 CG CD OE1 NE2 REMARK 470 GLN B 118 CG CD OE1 NE2 REMARK 470 GLN B 119 CG CD OE1 NE2 REMARK 470 ASN B 120 CG OD1 ND2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 GLN C 82 CG CD OE1 NE2 REMARK 470 GLN C 89 CG CD OE1 NE2 REMARK 470 GLN C 90 CG CD OE1 NE2 REMARK 470 GLN C 92 CG CD OE1 NE2 REMARK 470 GLN C 118 CG CD OE1 NE2 REMARK 470 GLN C 185 CG CD OE1 NE2 REMARK 470 LYS C 201 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 -165.49 -118.53 REMARK 500 ASP B 60 -160.35 -117.38 REMARK 500 ASN B 120 64.20 63.29 REMARK 500 GLN B 217 107.67 -45.75 REMARK 500 LYS C 30 74.11 24.53 REMARK 500 ASP C 60 -162.37 -117.55 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7T14 A 1 229 UNP A0A7D6GPL1_SIV DBREF2 7T14 A A0A7D6GPL1 124 352 DBREF1 7T14 B 1 229 UNP A0A7D6GPL1_SIV DBREF2 7T14 B A0A7D6GPL1 124 352 DBREF1 7T14 C 1 229 UNP A0A7D6GPL1_SIV DBREF2 7T14 C A0A7D6GPL1 124 352 SEQADV 7T14 CYS A 13 UNP A0A7D6GPL PRO 136 ENGINEERED MUTATION SEQADV 7T14 CYS A 44 UNP A0A7D6GPL GLU 167 ENGINEERED MUTATION SEQADV 7T14 ALA A 182 UNP A0A7D6GPL TRP 305 ENGINEERED MUTATION SEQADV 7T14 ALA A 183 UNP A0A7D6GPL MET 306 ENGINEERED MUTATION SEQADV 7T14 CYS B 13 UNP A0A7D6GPL PRO 136 ENGINEERED MUTATION SEQADV 7T14 CYS B 44 UNP A0A7D6GPL GLU 167 ENGINEERED MUTATION SEQADV 7T14 ALA B 182 UNP A0A7D6GPL TRP 305 ENGINEERED MUTATION SEQADV 7T14 ALA B 183 UNP A0A7D6GPL MET 306 ENGINEERED MUTATION SEQADV 7T14 CYS C 13 UNP A0A7D6GPL PRO 136 ENGINEERED MUTATION SEQADV 7T14 CYS C 44 UNP A0A7D6GPL GLU 167 ENGINEERED MUTATION SEQADV 7T14 ALA C 182 UNP A0A7D6GPL TRP 305 ENGINEERED MUTATION SEQADV 7T14 ALA C 183 UNP A0A7D6GPL MET 306 ENGINEERED MUTATION SEQRES 1 A 229 PRO VAL GLN GLN ILE GLY GLY ASN TYR VAL HIS LEU CYS SEQRES 2 A 229 LEU SER PRO ARG THR LEU ASN ALA TRP VAL LYS LEU ILE SEQRES 3 A 229 GLU GLU LYS LYS PHE GLY ALA GLU VAL VAL PRO GLY PHE SEQRES 4 A 229 GLN ALA LEU SER CYS GLY CYS THR PRO TYR ASP ILE ASN SEQRES 5 A 229 GLN MET LEU ASN CYS VAL GLY ASP HIS GLN ALA ALA MET SEQRES 6 A 229 GLN ILE ILE ARG ASP ILE ILE ASN GLU GLU ALA ALA ASP SEQRES 7 A 229 TRP ASP LEU GLN HIS PRO GLN PRO ALA PRO GLN GLN GLY SEQRES 8 A 229 GLN LEU ARG GLU PRO SER GLY SER ASP ILE ALA GLY THR SEQRES 9 A 229 THR SER SER VAL ASP GLU GLN ILE GLN TRP MET TYR ARG SEQRES 10 A 229 GLN GLN ASN PRO ILE PRO VAL GLY ASN ILE TYR ARG ARG SEQRES 11 A 229 TRP ILE GLN LEU GLY LEU GLN LYS CYS VAL ARG MET TYR SEQRES 12 A 229 ASN PRO THR ASN ILE LEU ASP VAL LYS GLN GLY PRO LYS SEQRES 13 A 229 GLU PRO PHE GLN SER TYR VAL ASP ARG PHE TYR LYS SER SEQRES 14 A 229 LEU ARG ALA GLU GLN THR ASP ALA ALA VAL LYS ASN ALA SEQRES 15 A 229 ALA THR GLN THR LEU LEU ILE GLN ASN ALA ASN PRO ASP SEQRES 16 A 229 CYS LYS LEU VAL LEU LYS GLY LEU GLY VAL ASN PRO THR SEQRES 17 A 229 LEU GLU GLU MET LEU THR ALA CYS GLN GLY VAL GLY GLY SEQRES 18 A 229 PRO GLY GLN LYS ALA ARG LEU MET SEQRES 1 B 229 PRO VAL GLN GLN ILE GLY GLY ASN TYR VAL HIS LEU CYS SEQRES 2 B 229 LEU SER PRO ARG THR LEU ASN ALA TRP VAL LYS LEU ILE SEQRES 3 B 229 GLU GLU LYS LYS PHE GLY ALA GLU VAL VAL PRO GLY PHE SEQRES 4 B 229 GLN ALA LEU SER CYS GLY CYS THR PRO TYR ASP ILE ASN SEQRES 5 B 229 GLN MET LEU ASN CYS VAL GLY ASP HIS GLN ALA ALA MET SEQRES 6 B 229 GLN ILE ILE ARG ASP ILE ILE ASN GLU GLU ALA ALA ASP SEQRES 7 B 229 TRP ASP LEU GLN HIS PRO GLN PRO ALA PRO GLN GLN GLY SEQRES 8 B 229 GLN LEU ARG GLU PRO SER GLY SER ASP ILE ALA GLY THR SEQRES 9 B 229 THR SER SER VAL ASP GLU GLN ILE GLN TRP MET TYR ARG SEQRES 10 B 229 GLN GLN ASN PRO ILE PRO VAL GLY ASN ILE TYR ARG ARG SEQRES 11 B 229 TRP ILE GLN LEU GLY LEU GLN LYS CYS VAL ARG MET TYR SEQRES 12 B 229 ASN PRO THR ASN ILE LEU ASP VAL LYS GLN GLY PRO LYS SEQRES 13 B 229 GLU PRO PHE GLN SER TYR VAL ASP ARG PHE TYR LYS SER SEQRES 14 B 229 LEU ARG ALA GLU GLN THR ASP ALA ALA VAL LYS ASN ALA SEQRES 15 B 229 ALA THR GLN THR LEU LEU ILE GLN ASN ALA ASN PRO ASP SEQRES 16 B 229 CYS LYS LEU VAL LEU LYS GLY LEU GLY VAL ASN PRO THR SEQRES 17 B 229 LEU GLU GLU MET LEU THR ALA CYS GLN GLY VAL GLY GLY SEQRES 18 B 229 PRO GLY GLN LYS ALA ARG LEU MET SEQRES 1 C 229 PRO VAL GLN GLN ILE GLY GLY ASN TYR VAL HIS LEU CYS SEQRES 2 C 229 LEU SER PRO ARG THR LEU ASN ALA TRP VAL LYS LEU ILE SEQRES 3 C 229 GLU GLU LYS LYS PHE GLY ALA GLU VAL VAL PRO GLY PHE SEQRES 4 C 229 GLN ALA LEU SER CYS GLY CYS THR PRO TYR ASP ILE ASN SEQRES 5 C 229 GLN MET LEU ASN CYS VAL GLY ASP HIS GLN ALA ALA MET SEQRES 6 C 229 GLN ILE ILE ARG ASP ILE ILE ASN GLU GLU ALA ALA ASP SEQRES 7 C 229 TRP ASP LEU GLN HIS PRO GLN PRO ALA PRO GLN GLN GLY SEQRES 8 C 229 GLN LEU ARG GLU PRO SER GLY SER ASP ILE ALA GLY THR SEQRES 9 C 229 THR SER SER VAL ASP GLU GLN ILE GLN TRP MET TYR ARG SEQRES 10 C 229 GLN GLN ASN PRO ILE PRO VAL GLY ASN ILE TYR ARG ARG SEQRES 11 C 229 TRP ILE GLN LEU GLY LEU GLN LYS CYS VAL ARG MET TYR SEQRES 12 C 229 ASN PRO THR ASN ILE LEU ASP VAL LYS GLN GLY PRO LYS SEQRES 13 C 229 GLU PRO PHE GLN SER TYR VAL ASP ARG PHE TYR LYS SER SEQRES 14 C 229 LEU ARG ALA GLU GLN THR ASP ALA ALA VAL LYS ASN ALA SEQRES 15 C 229 ALA THR GLN THR LEU LEU ILE GLN ASN ALA ASN PRO ASP SEQRES 16 C 229 CYS LYS LEU VAL LEU LYS GLY LEU GLY VAL ASN PRO THR SEQRES 17 C 229 LEU GLU GLU MET LEU THR ALA CYS GLN GLY VAL GLY GLY SEQRES 18 C 229 PRO GLY GLN LYS ALA ARG LEU MET FORMUL 4 HOH *513(H2 O) HELIX 1 AA1 SER A 15 LYS A 30 1 16 HELIX 2 AA2 GLU A 34 SER A 43 1 10 HELIX 3 AA3 THR A 47 CYS A 57 1 11 HELIX 4 AA4 HIS A 61 HIS A 83 1 23 HELIX 5 AA5 PRO A 88 GLN A 92 5 5 HELIX 6 AA6 SER A 97 ALA A 102 1 6 HELIX 7 AA7 SER A 107 ARG A 117 1 11 HELIX 8 AA8 PRO A 123 ASN A 144 1 22 HELIX 9 AA9 ASN A 147 VAL A 151 5 5 HELIX 10 AB1 PRO A 158 GLU A 173 1 16 HELIX 11 AB2 ASN A 181 ASN A 191 1 11 HELIX 12 AB3 ASN A 193 GLY A 202 1 10 HELIX 13 AB4 THR A 208 GLN A 217 1 10 HELIX 14 AB5 SER B 15 LYS B 30 1 16 HELIX 15 AB6 GLU B 34 SER B 43 1 10 HELIX 16 AB7 THR B 47 CYS B 57 1 11 HELIX 17 AB8 HIS B 61 HIS B 83 1 23 HELIX 18 AB9 SER B 97 ALA B 102 1 6 HELIX 19 AC1 SER B 107 ARG B 117 1 11 HELIX 20 AC2 PRO B 123 ASN B 144 1 22 HELIX 21 AC3 ASN B 147 VAL B 151 5 5 HELIX 22 AC4 PRO B 158 GLN B 174 1 17 HELIX 23 AC5 ASP B 176 ASN B 191 1 16 HELIX 24 AC6 ASN B 193 LYS B 201 1 9 HELIX 25 AC7 THR B 208 GLN B 217 1 10 HELIX 26 AC8 SER C 15 LYS C 30 1 16 HELIX 27 AC9 GLU C 34 SER C 43 1 10 HELIX 28 AD1 THR C 47 CYS C 57 1 11 HELIX 29 AD2 HIS C 61 HIS C 83 1 23 HELIX 30 AD3 SER C 97 ALA C 102 1 6 HELIX 31 AD4 SER C 107 ARG C 117 1 11 HELIX 32 AD5 PRO C 123 TYR C 143 1 21 HELIX 33 AD6 ASN C 147 VAL C 151 5 5 HELIX 34 AD7 PRO C 158 GLU C 173 1 16 HELIX 35 AD8 GLN C 185 ASN C 191 1 7 HELIX 36 AD9 ASN C 193 GLY C 202 1 10 HELIX 37 AE1 THR C 208 GLN C 217 1 10 SHEET 1 AA1 2 VAL A 2 ILE A 5 0 SHEET 2 AA1 2 ASN A 8 HIS A 11 -1 O VAL A 10 N GLN A 3 SHEET 1 AA2 2 VAL B 2 ILE B 5 0 SHEET 2 AA2 2 ASN B 8 HIS B 11 -1 O VAL B 10 N GLN B 3 SHEET 1 AA3 2 VAL C 2 ILE C 5 0 SHEET 2 AA3 2 ASN C 8 HIS C 11 -1 O VAL C 10 N GLN C 3 SSBOND 1 CYS A 13 CYS A 44 1555 6545 2.53 SSBOND 2 CYS B 13 CYS C 44 1555 3655 2.61 SSBOND 3 CYS B 44 CYS C 13 1555 1555 2.04 CRYST1 153.102 153.102 62.540 90.00 90.00 120.00 P 6 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006532 0.003771 0.000000 0.00000 SCALE2 0.000000 0.007542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015990 0.00000