data_7T1N # _entry.id 7T1N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7T1N pdb_00007t1n 10.2210/pdb7t1n/pdb WWPDB D_1000260994 ? ? BMRB 30971 ? 10.13018/BMR30971 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-09-14 2 'Structure model' 1 1 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7T1N _pdbx_database_status.recvd_initial_deposition_date 2021-12-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type SASBDB . SASDME9 'associated SAS data' BMRB 'Solution structure of 7SK stem-loop 1 with HEXIM Arginine Rich Motif' 30971 unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email dsouza@g.harvard.edu _pdbx_contact_author.name_first Victoria _pdbx_contact_author.name_last "D'Souza" _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5397-9481 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pham, V.V.' 1 0000-0002-3981-404X 'Gao, M.' 2 0000-0003-4513-0792 ;D'Souza, V.M. ; 3 0000-0002-5397-9481 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 5 _citation.language ? _citation.page_first 819 _citation.page_last 819 _citation.title 'A structure-based mechanism for displacement of the HEXIM adapter from 7SK small nuclear RNA.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-022-03734-w _citation.pdbx_database_id_PubMed 35970937 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pham, V.V.' 1 ? primary 'Gao, M.' 2 ? primary 'Meagher, J.L.' 3 ? primary 'Smith, J.L.' 4 0000-0002-0664-9228 primary ;D'Souza, V.M. ; 5 0000-0002-5397-9481 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (56-MER)' 17986.635 1 ? ? ? ? 2 polymer syn 'HEXIM Arginine Rich Motif' 2285.681 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGGAUCUGUCACCCCAUUGAUCGCCAGUGGCUGAUCUGGCUGGCUAGGCGGGUCCC GGGAUCUGUCACCCCAUUGAUCGCCAGUGGCUGAUCUGGCUGGCUAGGCGGGUCCC A ? 2 'polypeptide(L)' no no GISYGRQLGKKKHRRRAHQ GISYGRQLGKKKHRRRAHQ B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 U n 1 6 C n 1 7 U n 1 8 G n 1 9 U n 1 10 C n 1 11 A n 1 12 C n 1 13 C n 1 14 C n 1 15 C n 1 16 A n 1 17 U n 1 18 U n 1 19 G n 1 20 A n 1 21 U n 1 22 C n 1 23 G n 1 24 C n 1 25 C n 1 26 A n 1 27 G n 1 28 U n 1 29 G n 1 30 G n 1 31 C n 1 32 U n 1 33 G n 1 34 A n 1 35 U n 1 36 C n 1 37 U n 1 38 G n 1 39 G n 1 40 C n 1 41 U n 1 42 G n 1 43 G n 1 44 C n 1 45 U n 1 46 A n 1 47 G n 1 48 G n 1 49 C n 1 50 G n 1 51 G n 1 52 G n 1 53 U n 1 54 C n 1 55 C n 1 56 C n 2 1 GLY n 2 2 ILE n 2 3 SER n 2 4 TYR n 2 5 GLY n 2 6 ARG n 2 7 GLN n 2 8 LEU n 2 9 GLY n 2 10 LYS n 2 11 LYS n 2 12 LYS n 2 13 HIS n 2 14 ARG n 2 15 ARG n 2 16 ARG n 2 17 ALA n 2 18 HIS n 2 19 GLN n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 56 'Homo sapiens' Human 9606 ? 2 1 sample 1 19 'Homo sapiens' Human 9606 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 24 24 G GUA A . n A 1 2 G 2 25 25 G GUA A . n A 1 3 G 3 26 26 G GUA A . n A 1 4 A 4 27 27 A ADE A . n A 1 5 U 5 28 28 U URI A . n A 1 6 C 6 29 29 C CYT A . n A 1 7 U 7 30 30 U URI A . n A 1 8 G 8 31 31 G GUA A . n A 1 9 U 9 32 32 U URI A . n A 1 10 C 10 33 33 C CYT A . n A 1 11 A 11 34 34 A ADE A . n A 1 12 C 12 35 35 C CYT A . n A 1 13 C 13 36 36 C CYT A . n A 1 14 C 14 37 37 C CYT A . n A 1 15 C 15 38 38 C CYT A . n A 1 16 A 16 39 39 A ADE A . n A 1 17 U 17 40 40 U URI A . n A 1 18 U 18 41 41 U URI A . n A 1 19 G 19 42 42 G GUA A . n A 1 20 A 20 43 43 A ADE A . n A 1 21 U 21 44 44 U URI A . n A 1 22 C 22 45 45 C CYT A . n A 1 23 G 23 46 46 G GUA A . n A 1 24 C 24 47 47 C CYT A . n A 1 25 C 25 48 48 C CYT A . n A 1 26 A 26 49 49 A ADE A . n A 1 27 G 27 50 50 G GUA A . n A 1 28 U 28 51 51 U URI A . n A 1 29 G 29 60 60 G GUA A . n A 1 30 G 30 61 61 G GUA A . n A 1 31 C 31 62 62 C CYT A . n A 1 32 U 32 63 63 U URI A . n A 1 33 G 33 64 64 G GUA A . n A 1 34 A 34 65 65 A ADE A . n A 1 35 U 35 66 66 U URI A . n A 1 36 C 36 67 67 C CYT A . n A 1 37 U 37 68 68 U URI A . n A 1 38 G 38 69 69 G GUA A . n A 1 39 G 39 70 70 G GUA A . n A 1 40 C 40 71 71 C CYT A . n A 1 41 U 41 72 72 U URI A . n A 1 42 G 42 73 73 G GUA A . n A 1 43 G 43 74 74 G GUA A . n A 1 44 C 44 75 75 C CYT A . n A 1 45 U 45 76 76 U URI A . n A 1 46 A 46 77 77 A ADE A . n A 1 47 G 47 78 78 G GUA A . n A 1 48 G 48 79 79 G GUA A . n A 1 49 C 49 80 80 C CYT A . n A 1 50 G 50 81 81 G GUA A . n A 1 51 G 51 82 82 G GUA A . n A 1 52 G 52 83 83 G GUA A . n A 1 53 U 53 84 84 U URI A . n A 1 54 C 54 85 85 C CYT A . n A 1 55 C 55 86 86 C CYT A . n A 1 56 C 56 87 87 C CYT A . n B 2 1 GLY 1 141 141 GLY GLY B . n B 2 2 ILE 2 142 142 ILE ILE B . n B 2 3 SER 3 143 143 SER SER B . n B 2 4 TYR 4 144 144 TYR TYR B . n B 2 5 GLY 5 145 145 GLY GLY B . n B 2 6 ARG 6 146 146 ARG ARG B . n B 2 7 GLN 7 147 147 GLN GLN B . n B 2 8 LEU 8 148 148 LEU LEU B . n B 2 9 GLY 9 149 149 GLY GLY B . n B 2 10 LYS 10 150 150 LYS LYS B . n B 2 11 LYS 11 151 151 LYS LYS B . n B 2 12 LYS 12 152 152 LYS LYS B . n B 2 13 HIS 13 153 153 HIS HIS B . n B 2 14 ARG 14 154 154 ARG ARG B . n B 2 15 ARG 15 155 155 ARG ARG B . n B 2 16 ARG 16 156 156 ARG ARG B . n B 2 17 ALA 17 157 157 ALA ALA B . n B 2 18 HIS 18 158 158 HIS HIS B . n B 2 19 GLN 19 159 159 GLN GLN B . n # loop_ _exptl.absorpt_coefficient_mu _exptl.absorpt_correction_T_max _exptl.absorpt_correction_T_min _exptl.absorpt_correction_type _exptl.absorpt_process_details _exptl.entry_id _exptl.crystals_number _exptl.details _exptl.method _exptl.method_details ? ? ? ? ? 7T1N ? ? 'SOLUTION NMR' ? ? ? ? ? ? 7T1N ? ? 'SOLUTION SCATTERING' ? # _struct.entry_id 7T1N _struct.title 'Solution structure of 7SK stem-loop 1 with HEXIM Arginine Rich Motif' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7T1N _struct_keywords.text 'HIV-1, 7SK, Tat, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7T1N 7T1N ? 1 ? 1 2 PDB 7T1N 7T1N ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7T1N A 1 ? 56 ? 7T1N 24 ? 87 ? 24 87 2 2 7T1N B 1 ? 19 ? 7T1N 141 ? 159 ? 141 159 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2360 ? 1 MORE -10 ? 1 'SSA (A^2)' 11500 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 24 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 24 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 24 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 55 N3 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 55 O2 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 55 N4 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 54 N3 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 54 O2 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 54 N4 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 27 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 27 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 52 O6 ? ? A U 28 A G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 52 N1 ? ? A U 28 A G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 N3 ? ? ? 1_555 A G 50 O6 ? ? A U 30 A G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A U 7 O2 ? ? ? 1_555 A G 50 N1 ? ? A U 30 A G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 9 N3 ? ? ? 1_555 A G 48 O6 ? ? A U 32 A G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A U 9 O2 ? ? ? 1_555 A G 48 N1 ? ? A U 32 A G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 11 N1 ? ? ? 1_555 A A 46 N6 ? ? A A 34 A A 77 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 37 O2 ? ? A A 39 A U 68 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog41 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 20 N7 ? ? A U 40 A A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog42 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 20 N6 ? ? A U 40 A A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog43 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 35 N3 ? ? A A 43 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 35 O4 ? ? A A 43 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 34 N1 ? ? A U 44 A A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 44 A A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 32 N3 ? ? ? 1_555 A A 34 N7 ? ? A U 63 A A 65 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog63 hydrog ? ? A U 32 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 63 A A 65 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog64 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 71 A G 74 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog65 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 75 A G 78 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.70 109.70 -5.00 0.70 N 2 2 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.81 109.70 -4.89 0.70 N 3 3 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.72 109.70 -4.98 0.70 N 4 4 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.48 109.70 -5.22 0.70 N 5 5 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.58 109.70 -5.12 0.70 N 6 6 "C1'" A U 40 ? ? "O4'" A U 40 ? ? "C4'" A U 40 ? ? 105.13 109.70 -4.57 0.70 N 7 6 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.55 109.70 -5.15 0.70 N 8 6 "C1'" A C 71 ? ? "O4'" A C 71 ? ? "C4'" A C 71 ? ? 104.06 109.70 -5.64 0.70 N 9 7 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 105.34 109.70 -4.36 0.70 N 10 7 "O4'" A U 63 ? ? "C1'" A U 63 ? ? N1 A U 63 ? ? 112.92 108.50 4.42 0.70 N 11 8 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.44 109.70 -5.26 0.70 N 12 9 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.68 109.70 -5.02 0.70 N 13 10 "C3'" A U 51 ? ? "O3'" A U 51 ? ? P A G 60 ? ? 127.41 119.70 7.71 1.20 Y 14 10 "C1'" A U 63 ? ? "O4'" A U 63 ? ? "C4'" A U 63 ? ? 104.95 109.70 -4.75 0.70 N 15 10 "C1'" A C 71 ? ? "O4'" A C 71 ? ? "C4'" A C 71 ? ? 105.28 109.70 -4.42 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG B 155 ? ? -137.33 -69.97 2 2 ARG B 155 ? ? -135.31 -65.16 3 3 ARG B 155 ? ? -136.05 -69.32 4 4 ARG B 155 ? ? -134.85 -66.36 5 4 ALA B 157 ? ? -133.25 -77.24 6 5 ARG B 155 ? ? -140.36 -47.23 7 6 ARG B 154 ? ? -166.74 115.58 8 6 ARG B 155 ? ? -174.53 -172.11 9 6 ARG B 156 ? ? 70.75 160.63 10 7 ARG B 155 ? ? -134.54 -38.89 11 8 ARG B 155 ? ? -135.20 -68.34 12 9 ARG B 156 ? ? 65.45 91.13 13 10 ARG B 155 ? ? -172.12 82.92 # _pdbx_nmr_ensemble.entry_id 7T1N _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7T1N _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.5 mM HEXIM, 0.5 mM 7SK, 100% D2O' '100% D2O' 'HEXIM:7SK D2O' solution ? 2 '0.5 mM HEXIM, 0.5 mM 7SK, 90% H2O/10% D2O' '90% H2O/10% D2O' 'HEXIM:7SK H2O' solution ? 3 '0.5 mM [U-100% 13C; U-100% 15N] HEXIM, 0.5 mM 7SK, 90% H2O/10% D2O' '90% H2O/10% D2O' 'HEXIM:7SK 15NHEXIM' solution ? 4 '0.5 mM HEXIM, 0.5 mM [U-100% 13C; U-100% 15N] 7SK, 90% H2O/10% D2O' '90% H2O/10% D2O' 'HEXIM:7SK 15N7SK' solution ? 5 '0.5 mM HEXIM, 0.5 mM [U-100% 13C; U-100% 15N] 7SK, 100% D2O' '100% D2O' 'HEXIM:7SK 13C7SK' solution ? 6 '0.5 mM [U-100% 13C; U-100% 15N] HEXIM, 0.5 mM 7SK, 100% D2O' '100% D2O' 'HEXIM:7SK 13CHEXIM' solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 HEXIM 0.5 ? mM 'natural abundance' 1 7SK 0.5 ? mM 'natural abundance' 2 HEXIM 0.5 ? mM 'natural abundance' 2 7SK 0.5 ? mM 'natural abundance' 3 HEXIM 0.5 ? mM '[U-100% 13C; U-100% 15N]' 3 7SK 0.5 ? mM 'natural abundance' 4 HEXIM 0.5 ? mM 'natural abundance' 4 7SK 0.5 ? mM '[U-100% 13C; U-100% 15N]' 5 HEXIM 0.5 ? mM 'natural abundance' 5 7SK 0.5 ? mM '[U-100% 13C; U-100% 15N]' 6 HEXIM 0.5 ? mM '[U-100% 13C; U-100% 15N]' 6 7SK 0.5 ? mM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure 100000 _pdbx_nmr_exptl_sample_conditions.pH 5.6 _pdbx_nmr_exptl_sample_conditions.ionic_strength '70mM NaCl, 0.1mM EDTA' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 'HEXIM:7SK D2O' _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 2 '2D 1H-1H NOESY' 1 isotropic 3 1 3 '2D 1H-13C HSQC' 1 isotropic 4 1 4 '2D 1H-13C HSQC' 1 isotropic 5 1 5 '2D 1H-13C HSQC aliphatic' 1 isotropic 6 1 6 '2D 1H-13C HSQC aliphatic' 1 isotropic # _pdbx_nmr_refine.entry_id 7T1N _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 8 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 'peak picking' NMRView ? 'Johnson, One Moon Scientific' 3 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 4 'data analysis' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 5 processing CYANA ? 'Guntert, Mumenthaler and Wuthrich' 6 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 7 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 8 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 C OP3 O N N 78 C P P N N 79 C OP1 O N N 80 C OP2 O N N 81 C "O5'" O N N 82 C "C5'" C N N 83 C "C4'" C N R 84 C "O4'" O N N 85 C "C3'" C N S 86 C "O3'" O N N 87 C "C2'" C N R 88 C "O2'" O N N 89 C "C1'" C N R 90 C N1 N N N 91 C C2 C N N 92 C O2 O N N 93 C N3 N N N 94 C C4 C N N 95 C N4 N N N 96 C C5 C N N 97 C C6 C N N 98 C HOP3 H N N 99 C HOP2 H N N 100 C "H5'" H N N 101 C "H5''" H N N 102 C "H4'" H N N 103 C "H3'" H N N 104 C "HO3'" H N N 105 C "H2'" H N N 106 C "HO2'" H N N 107 C "H1'" H N N 108 C H41 H N N 109 C H42 H N N 110 C H5 H N N 111 C H6 H N N 112 G OP3 O N N 113 G P P N N 114 G OP1 O N N 115 G OP2 O N N 116 G "O5'" O N N 117 G "C5'" C N N 118 G "C4'" C N R 119 G "O4'" O N N 120 G "C3'" C N S 121 G "O3'" O N N 122 G "C2'" C N R 123 G "O2'" O N N 124 G "C1'" C N R 125 G N9 N Y N 126 G C8 C Y N 127 G N7 N Y N 128 G C5 C Y N 129 G C6 C N N 130 G O6 O N N 131 G N1 N N N 132 G C2 C N N 133 G N2 N N N 134 G N3 N N N 135 G C4 C Y N 136 G HOP3 H N N 137 G HOP2 H N N 138 G "H5'" H N N 139 G "H5''" H N N 140 G "H4'" H N N 141 G "H3'" H N N 142 G "HO3'" H N N 143 G "H2'" H N N 144 G "HO2'" H N N 145 G "H1'" H N N 146 G H8 H N N 147 G H1 H N N 148 G H21 H N N 149 G H22 H N N 150 GLN N N N N 151 GLN CA C N S 152 GLN C C N N 153 GLN O O N N 154 GLN CB C N N 155 GLN CG C N N 156 GLN CD C N N 157 GLN OE1 O N N 158 GLN NE2 N N N 159 GLN OXT O N N 160 GLN H H N N 161 GLN H2 H N N 162 GLN HA H N N 163 GLN HB2 H N N 164 GLN HB3 H N N 165 GLN HG2 H N N 166 GLN HG3 H N N 167 GLN HE21 H N N 168 GLN HE22 H N N 169 GLN HXT H N N 170 GLY N N N N 171 GLY CA C N N 172 GLY C C N N 173 GLY O O N N 174 GLY OXT O N N 175 GLY H H N N 176 GLY H2 H N N 177 GLY HA2 H N N 178 GLY HA3 H N N 179 GLY HXT H N N 180 HIS N N N N 181 HIS CA C N S 182 HIS C C N N 183 HIS O O N N 184 HIS CB C N N 185 HIS CG C Y N 186 HIS ND1 N Y N 187 HIS CD2 C Y N 188 HIS CE1 C Y N 189 HIS NE2 N Y N 190 HIS OXT O N N 191 HIS H H N N 192 HIS H2 H N N 193 HIS HA H N N 194 HIS HB2 H N N 195 HIS HB3 H N N 196 HIS HD1 H N N 197 HIS HD2 H N N 198 HIS HE1 H N N 199 HIS HE2 H N N 200 HIS HXT H N N 201 ILE N N N N 202 ILE CA C N S 203 ILE C C N N 204 ILE O O N N 205 ILE CB C N S 206 ILE CG1 C N N 207 ILE CG2 C N N 208 ILE CD1 C N N 209 ILE OXT O N N 210 ILE H H N N 211 ILE H2 H N N 212 ILE HA H N N 213 ILE HB H N N 214 ILE HG12 H N N 215 ILE HG13 H N N 216 ILE HG21 H N N 217 ILE HG22 H N N 218 ILE HG23 H N N 219 ILE HD11 H N N 220 ILE HD12 H N N 221 ILE HD13 H N N 222 ILE HXT H N N 223 LEU N N N N 224 LEU CA C N S 225 LEU C C N N 226 LEU O O N N 227 LEU CB C N N 228 LEU CG C N N 229 LEU CD1 C N N 230 LEU CD2 C N N 231 LEU OXT O N N 232 LEU H H N N 233 LEU H2 H N N 234 LEU HA H N N 235 LEU HB2 H N N 236 LEU HB3 H N N 237 LEU HG H N N 238 LEU HD11 H N N 239 LEU HD12 H N N 240 LEU HD13 H N N 241 LEU HD21 H N N 242 LEU HD22 H N N 243 LEU HD23 H N N 244 LEU HXT H N N 245 LYS N N N N 246 LYS CA C N S 247 LYS C C N N 248 LYS O O N N 249 LYS CB C N N 250 LYS CG C N N 251 LYS CD C N N 252 LYS CE C N N 253 LYS NZ N N N 254 LYS OXT O N N 255 LYS H H N N 256 LYS H2 H N N 257 LYS HA H N N 258 LYS HB2 H N N 259 LYS HB3 H N N 260 LYS HG2 H N N 261 LYS HG3 H N N 262 LYS HD2 H N N 263 LYS HD3 H N N 264 LYS HE2 H N N 265 LYS HE3 H N N 266 LYS HZ1 H N N 267 LYS HZ2 H N N 268 LYS HZ3 H N N 269 LYS HXT H N N 270 SER N N N N 271 SER CA C N S 272 SER C C N N 273 SER O O N N 274 SER CB C N N 275 SER OG O N N 276 SER OXT O N N 277 SER H H N N 278 SER H2 H N N 279 SER HA H N N 280 SER HB2 H N N 281 SER HB3 H N N 282 SER HG H N N 283 SER HXT H N N 284 TYR N N N N 285 TYR CA C N S 286 TYR C C N N 287 TYR O O N N 288 TYR CB C N N 289 TYR CG C Y N 290 TYR CD1 C Y N 291 TYR CD2 C Y N 292 TYR CE1 C Y N 293 TYR CE2 C Y N 294 TYR CZ C Y N 295 TYR OH O N N 296 TYR OXT O N N 297 TYR H H N N 298 TYR H2 H N N 299 TYR HA H N N 300 TYR HB2 H N N 301 TYR HB3 H N N 302 TYR HD1 H N N 303 TYR HD2 H N N 304 TYR HE1 H N N 305 TYR HE2 H N N 306 TYR HH H N N 307 TYR HXT H N N 308 U OP3 O N N 309 U P P N N 310 U OP1 O N N 311 U OP2 O N N 312 U "O5'" O N N 313 U "C5'" C N N 314 U "C4'" C N R 315 U "O4'" O N N 316 U "C3'" C N S 317 U "O3'" O N N 318 U "C2'" C N R 319 U "O2'" O N N 320 U "C1'" C N R 321 U N1 N N N 322 U C2 C N N 323 U O2 O N N 324 U N3 N N N 325 U C4 C N N 326 U O4 O N N 327 U C5 C N N 328 U C6 C N N 329 U HOP3 H N N 330 U HOP2 H N N 331 U "H5'" H N N 332 U "H5''" H N N 333 U "H4'" H N N 334 U "H3'" H N N 335 U "HO3'" H N N 336 U "H2'" H N N 337 U "HO2'" H N N 338 U "H1'" H N N 339 U H3 H N N 340 U H5 H N N 341 U H6 H N N 342 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 C OP3 P sing N N 78 C OP3 HOP3 sing N N 79 C P OP1 doub N N 80 C P OP2 sing N N 81 C P "O5'" sing N N 82 C OP2 HOP2 sing N N 83 C "O5'" "C5'" sing N N 84 C "C5'" "C4'" sing N N 85 C "C5'" "H5'" sing N N 86 C "C5'" "H5''" sing N N 87 C "C4'" "O4'" sing N N 88 C "C4'" "C3'" sing N N 89 C "C4'" "H4'" sing N N 90 C "O4'" "C1'" sing N N 91 C "C3'" "O3'" sing N N 92 C "C3'" "C2'" sing N N 93 C "C3'" "H3'" sing N N 94 C "O3'" "HO3'" sing N N 95 C "C2'" "O2'" sing N N 96 C "C2'" "C1'" sing N N 97 C "C2'" "H2'" sing N N 98 C "O2'" "HO2'" sing N N 99 C "C1'" N1 sing N N 100 C "C1'" "H1'" sing N N 101 C N1 C2 sing N N 102 C N1 C6 sing N N 103 C C2 O2 doub N N 104 C C2 N3 sing N N 105 C N3 C4 doub N N 106 C C4 N4 sing N N 107 C C4 C5 sing N N 108 C N4 H41 sing N N 109 C N4 H42 sing N N 110 C C5 C6 doub N N 111 C C5 H5 sing N N 112 C C6 H6 sing N N 113 G OP3 P sing N N 114 G OP3 HOP3 sing N N 115 G P OP1 doub N N 116 G P OP2 sing N N 117 G P "O5'" sing N N 118 G OP2 HOP2 sing N N 119 G "O5'" "C5'" sing N N 120 G "C5'" "C4'" sing N N 121 G "C5'" "H5'" sing N N 122 G "C5'" "H5''" sing N N 123 G "C4'" "O4'" sing N N 124 G "C4'" "C3'" sing N N 125 G "C4'" "H4'" sing N N 126 G "O4'" "C1'" sing N N 127 G "C3'" "O3'" sing N N 128 G "C3'" "C2'" sing N N 129 G "C3'" "H3'" sing N N 130 G "O3'" "HO3'" sing N N 131 G "C2'" "O2'" sing N N 132 G "C2'" "C1'" sing N N 133 G "C2'" "H2'" sing N N 134 G "O2'" "HO2'" sing N N 135 G "C1'" N9 sing N N 136 G "C1'" "H1'" sing N N 137 G N9 C8 sing Y N 138 G N9 C4 sing Y N 139 G C8 N7 doub Y N 140 G C8 H8 sing N N 141 G N7 C5 sing Y N 142 G C5 C6 sing N N 143 G C5 C4 doub Y N 144 G C6 O6 doub N N 145 G C6 N1 sing N N 146 G N1 C2 sing N N 147 G N1 H1 sing N N 148 G C2 N2 sing N N 149 G C2 N3 doub N N 150 G N2 H21 sing N N 151 G N2 H22 sing N N 152 G N3 C4 sing N N 153 GLN N CA sing N N 154 GLN N H sing N N 155 GLN N H2 sing N N 156 GLN CA C sing N N 157 GLN CA CB sing N N 158 GLN CA HA sing N N 159 GLN C O doub N N 160 GLN C OXT sing N N 161 GLN CB CG sing N N 162 GLN CB HB2 sing N N 163 GLN CB HB3 sing N N 164 GLN CG CD sing N N 165 GLN CG HG2 sing N N 166 GLN CG HG3 sing N N 167 GLN CD OE1 doub N N 168 GLN CD NE2 sing N N 169 GLN NE2 HE21 sing N N 170 GLN NE2 HE22 sing N N 171 GLN OXT HXT sing N N 172 GLY N CA sing N N 173 GLY N H sing N N 174 GLY N H2 sing N N 175 GLY CA C sing N N 176 GLY CA HA2 sing N N 177 GLY CA HA3 sing N N 178 GLY C O doub N N 179 GLY C OXT sing N N 180 GLY OXT HXT sing N N 181 HIS N CA sing N N 182 HIS N H sing N N 183 HIS N H2 sing N N 184 HIS CA C sing N N 185 HIS CA CB sing N N 186 HIS CA HA sing N N 187 HIS C O doub N N 188 HIS C OXT sing N N 189 HIS CB CG sing N N 190 HIS CB HB2 sing N N 191 HIS CB HB3 sing N N 192 HIS CG ND1 sing Y N 193 HIS CG CD2 doub Y N 194 HIS ND1 CE1 doub Y N 195 HIS ND1 HD1 sing N N 196 HIS CD2 NE2 sing Y N 197 HIS CD2 HD2 sing N N 198 HIS CE1 NE2 sing Y N 199 HIS CE1 HE1 sing N N 200 HIS NE2 HE2 sing N N 201 HIS OXT HXT sing N N 202 ILE N CA sing N N 203 ILE N H sing N N 204 ILE N H2 sing N N 205 ILE CA C sing N N 206 ILE CA CB sing N N 207 ILE CA HA sing N N 208 ILE C O doub N N 209 ILE C OXT sing N N 210 ILE CB CG1 sing N N 211 ILE CB CG2 sing N N 212 ILE CB HB sing N N 213 ILE CG1 CD1 sing N N 214 ILE CG1 HG12 sing N N 215 ILE CG1 HG13 sing N N 216 ILE CG2 HG21 sing N N 217 ILE CG2 HG22 sing N N 218 ILE CG2 HG23 sing N N 219 ILE CD1 HD11 sing N N 220 ILE CD1 HD12 sing N N 221 ILE CD1 HD13 sing N N 222 ILE OXT HXT sing N N 223 LEU N CA sing N N 224 LEU N H sing N N 225 LEU N H2 sing N N 226 LEU CA C sing N N 227 LEU CA CB sing N N 228 LEU CA HA sing N N 229 LEU C O doub N N 230 LEU C OXT sing N N 231 LEU CB CG sing N N 232 LEU CB HB2 sing N N 233 LEU CB HB3 sing N N 234 LEU CG CD1 sing N N 235 LEU CG CD2 sing N N 236 LEU CG HG sing N N 237 LEU CD1 HD11 sing N N 238 LEU CD1 HD12 sing N N 239 LEU CD1 HD13 sing N N 240 LEU CD2 HD21 sing N N 241 LEU CD2 HD22 sing N N 242 LEU CD2 HD23 sing N N 243 LEU OXT HXT sing N N 244 LYS N CA sing N N 245 LYS N H sing N N 246 LYS N H2 sing N N 247 LYS CA C sing N N 248 LYS CA CB sing N N 249 LYS CA HA sing N N 250 LYS C O doub N N 251 LYS C OXT sing N N 252 LYS CB CG sing N N 253 LYS CB HB2 sing N N 254 LYS CB HB3 sing N N 255 LYS CG CD sing N N 256 LYS CG HG2 sing N N 257 LYS CG HG3 sing N N 258 LYS CD CE sing N N 259 LYS CD HD2 sing N N 260 LYS CD HD3 sing N N 261 LYS CE NZ sing N N 262 LYS CE HE2 sing N N 263 LYS CE HE3 sing N N 264 LYS NZ HZ1 sing N N 265 LYS NZ HZ2 sing N N 266 LYS NZ HZ3 sing N N 267 LYS OXT HXT sing N N 268 SER N CA sing N N 269 SER N H sing N N 270 SER N H2 sing N N 271 SER CA C sing N N 272 SER CA CB sing N N 273 SER CA HA sing N N 274 SER C O doub N N 275 SER C OXT sing N N 276 SER CB OG sing N N 277 SER CB HB2 sing N N 278 SER CB HB3 sing N N 279 SER OG HG sing N N 280 SER OXT HXT sing N N 281 TYR N CA sing N N 282 TYR N H sing N N 283 TYR N H2 sing N N 284 TYR CA C sing N N 285 TYR CA CB sing N N 286 TYR CA HA sing N N 287 TYR C O doub N N 288 TYR C OXT sing N N 289 TYR CB CG sing N N 290 TYR CB HB2 sing N N 291 TYR CB HB3 sing N N 292 TYR CG CD1 doub Y N 293 TYR CG CD2 sing Y N 294 TYR CD1 CE1 sing Y N 295 TYR CD1 HD1 sing N N 296 TYR CD2 CE2 doub Y N 297 TYR CD2 HD2 sing N N 298 TYR CE1 CZ doub Y N 299 TYR CE1 HE1 sing N N 300 TYR CE2 CZ sing Y N 301 TYR CE2 HE2 sing N N 302 TYR CZ OH sing N N 303 TYR OH HH sing N N 304 TYR OXT HXT sing N N 305 U OP3 P sing N N 306 U OP3 HOP3 sing N N 307 U P OP1 doub N N 308 U P OP2 sing N N 309 U P "O5'" sing N N 310 U OP2 HOP2 sing N N 311 U "O5'" "C5'" sing N N 312 U "C5'" "C4'" sing N N 313 U "C5'" "H5'" sing N N 314 U "C5'" "H5''" sing N N 315 U "C4'" "O4'" sing N N 316 U "C4'" "C3'" sing N N 317 U "C4'" "H4'" sing N N 318 U "O4'" "C1'" sing N N 319 U "C3'" "O3'" sing N N 320 U "C3'" "C2'" sing N N 321 U "C3'" "H3'" sing N N 322 U "O3'" "HO3'" sing N N 323 U "C2'" "O2'" sing N N 324 U "C2'" "C1'" sing N N 325 U "C2'" "H2'" sing N N 326 U "O2'" "HO2'" sing N N 327 U "C1'" N1 sing N N 328 U "C1'" "H1'" sing N N 329 U N1 C2 sing N N 330 U N1 C6 sing N N 331 U C2 O2 doub N N 332 U C2 N3 sing N N 333 U N3 C4 sing N N 334 U N3 H3 sing N N 335 U C4 O4 doub N N 336 U C4 C5 sing N N 337 U C5 C6 doub N N 338 U C5 H5 sing N N 339 U C6 H6 sing N N 340 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7T1N 'double helix' 7T1N 'a-form double helix' 7T1N 'hairpin loop' 7T1N 'bulge loop' 7T1N 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 56 1_555 -0.965 -0.246 0.365 6.922 0.110 -0.519 1 A_G24:C87_A A 24 ? A 87 ? 19 1 1 A G 2 1_555 A C 55 1_555 -0.950 -0.231 0.101 4.545 -6.805 -0.348 2 A_G25:C86_A A 25 ? A 86 ? 19 1 1 A G 3 1_555 A C 54 1_555 -0.896 -0.188 0.050 4.105 -5.436 -0.394 3 A_G26:C85_A A 26 ? A 85 ? 19 1 1 A A 4 1_555 A U 53 1_555 0.164 0.044 -0.164 -4.576 -5.440 -3.923 4 A_A27:U84_A A 27 ? A 84 ? 20 1 1 A U 5 1_555 A G 52 1_555 1.272 -0.064 -0.055 -2.979 -2.936 -4.000 5 A_U28:G83_A A 28 ? A 83 ? 28 1 1 A C 6 1_555 A G 51 1_555 0.641 -0.081 0.221 -1.792 -5.750 -0.577 6 A_C29:G82_A A 29 ? A 82 ? 19 1 1 A U 7 1_555 A G 50 1_555 1.407 -0.304 0.194 -4.621 -3.812 -3.312 7 A_U30:G81_A A 30 ? A 81 ? 28 1 1 A G 8 1_555 A C 49 1_555 -0.781 -0.185 0.206 3.282 -1.545 1.576 8 A_G31:C80_A A 31 ? A 80 ? 19 1 1 A U 9 1_555 A G 48 1_555 1.419 -0.309 -0.105 -5.849 8.785 -2.787 9 A_U32:G79_A A 32 ? A 79 ? 28 1 1 A C 10 1_555 A G 47 1_555 0.331 0.002 -0.306 -4.289 10.146 -1.566 10 A_C33:G78_A A 33 ? A 78 ? 19 1 1 A A 11 1_555 A A 46 1_555 1.155 1.064 -1.259 -19.853 23.119 -20.365 11 A_A34:A77_A A 34 ? A 77 ? ? 1 1 A C 12 1_555 A G 43 1_555 -0.184 -0.004 -0.187 7.968 16.940 0.180 12 A_C35:G74_A A 35 ? A 74 ? 19 1 1 A C 13 1_555 A G 42 1_555 0.180 -0.051 -0.223 1.032 13.017 1.508 13 A_C36:G73_A A 36 ? A 73 ? 19 1 1 A C 14 1_555 A G 39 1_555 0.335 0.029 -0.217 14.131 9.081 -0.892 14 A_C37:G70_A A 37 ? A 70 ? 19 1 1 A C 15 1_555 A G 38 1_555 0.905 -0.296 -0.291 32.156 11.805 2.607 15 A_C38:G69_A A 38 ? A 69 ? 19 1 1 A A 16 1_555 A U 37 1_555 -5.743 0.735 1.331 -5.812 -14.199 22.139 16 A_A39:U68_A A 39 ? A 68 ? ? 9 1 A G 19 1_555 A C 36 1_555 -0.831 -0.353 -0.068 -18.670 20.358 4.526 17 A_G42:C67_A A 42 ? A 67 ? 19 1 1 A A 20 1_555 A U 35 1_555 -0.564 -0.104 0.279 1.085 9.828 -0.107 18 A_A43:U66_A A 43 ? A 66 ? 20 1 1 A U 21 1_555 A A 34 1_555 0.833 -0.313 0.649 2.538 3.319 -1.454 19 A_U44:A65_A A 44 ? A 65 ? 20 1 1 A C 22 1_555 A G 33 1_555 0.595 -0.143 -0.256 -6.108 10.669 1.030 20 A_C45:G64_A A 45 ? A 64 ? 19 1 1 A G 23 1_555 A C 31 1_555 -0.015 0.050 0.461 3.110 10.621 1.410 21 A_G46:C62_A A 46 ? A 62 ? 19 1 1 A C 24 1_555 A G 30 1_555 -0.255 0.058 -0.151 2.633 14.576 -1.133 22 A_C47:G61_A A 47 ? A 61 ? 19 1 1 A C 25 1_555 A G 29 1_555 0.582 -0.293 -0.567 25.672 20.400 -1.268 23 A_C48:G60_A A 48 ? A 60 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 56 1_555 A G 2 1_555 A C 55 1_555 -0.110 -1.600 3.483 0.082 12.632 30.680 -4.879 0.206 2.637 22.705 -0.148 33.121 1 AA_G24G25:C86C87_AA A 24 ? A 87 ? A 25 ? A 86 ? 1 A G 2 1_555 A C 55 1_555 A G 3 1_555 A C 54 1_555 -0.128 -1.577 3.349 -1.702 11.434 30.637 -4.664 -0.050 2.611 20.735 3.087 32.697 2 AA_G25G26:C85C86_AA A 25 ? A 86 ? A 26 ? A 85 ? 1 A G 3 1_555 A C 54 1_555 A A 4 1_555 A U 53 1_555 -0.259 -1.394 3.917 0.341 9.180 35.710 -3.635 0.463 3.463 14.673 -0.544 36.836 3 AA_G26A27:U84C85_AA A 26 ? A 85 ? A 27 ? A 84 ? 1 A A 4 1_555 A U 53 1_555 A U 5 1_555 A G 52 1_555 -0.005 -1.458 3.484 0.708 7.033 33.405 -3.623 0.124 3.121 12.068 -1.215 34.124 4 AA_A27U28:G83U84_AA A 27 ? A 84 ? A 28 ? A 83 ? 1 A U 5 1_555 A G 52 1_555 A C 6 1_555 A G 51 1_555 0.326 -1.673 3.263 1.733 11.661 28.228 -5.268 -0.309 2.413 22.698 -3.374 30.545 5 AA_U28C29:G82G83_AA A 28 ? A 83 ? A 29 ? A 82 ? 1 A C 6 1_555 A G 51 1_555 A U 7 1_555 A G 50 1_555 0.007 -1.367 3.676 1.913 8.290 33.751 -3.649 0.303 3.255 14.004 -3.232 34.777 6 AA_C29U30:G81G82_AA A 29 ? A 82 ? A 30 ? A 81 ? 1 A U 7 1_555 A G 50 1_555 A G 8 1_555 A C 49 1_555 0.330 -1.818 2.786 0.561 14.535 22.131 -6.651 -0.619 1.359 33.596 -1.298 26.433 7 AA_U30G31:C80G81_AA A 30 ? A 81 ? A 31 ? A 80 ? 1 A G 8 1_555 A C 49 1_555 A U 9 1_555 A G 48 1_555 -0.216 -1.365 4.180 0.487 9.093 39.115 -3.269 0.383 3.779 13.363 -0.716 40.121 8 AA_G31U32:G79C80_AA A 31 ? A 80 ? A 32 ? A 79 ? 1 A U 9 1_555 A G 48 1_555 A C 10 1_555 A G 47 1_555 0.201 -2.065 3.621 2.889 9.318 23.162 -7.479 0.384 2.612 21.997 -6.821 25.106 9 AA_U32C33:G78G79_AA A 32 ? A 79 ? A 33 ? A 78 ? 1 A C 10 1_555 A G 47 1_555 A A 11 1_555 A A 46 1_555 -0.761 -2.624 5.287 8.470 5.597 24.488 -7.946 5.016 4.110 12.529 -18.962 26.479 10 AA_C33A34:A77G78_AA A 33 ? A 78 ? A 34 ? A 77 ? 1 A A 11 1_555 A A 46 1_555 A C 12 1_555 A G 43 1_555 2.271 -0.924 3.746 -14.838 16.533 23.384 -4.304 -6.468 1.240 32.815 29.450 32.148 11 AA_A34C35:G74A77_AA A 34 ? A 77 ? A 35 ? A 74 ? 1 A C 12 1_555 A G 43 1_555 A C 13 1_555 A G 42 1_555 0.129 -2.036 4.183 -0.676 13.082 27.139 -6.986 -0.407 2.910 26.040 1.346 30.081 12 AA_C35C36:G73G74_AA A 35 ? A 74 ? A 36 ? A 73 ? 1 A C 13 1_555 A G 42 1_555 A C 14 1_555 A G 39 1_555 -0.281 -2.044 3.440 -6.381 20.846 31.147 -5.520 -0.292 1.795 34.091 10.435 37.863 13 AA_C36C37:G70G73_AA A 36 ? A 73 ? A 37 ? A 70 ? 1 A C 14 1_555 A G 39 1_555 A C 15 1_555 A G 38 1_555 -0.304 -2.005 2.831 -3.925 16.214 28.194 -5.576 0.053 1.512 30.175 7.305 32.673 14 AA_C37C38:G69G70_AA A 37 ? A 70 ? A 38 ? A 69 ? 1 A C 15 1_555 A G 38 1_555 A A 16 1_555 A U 37 1_555 3.201 2.713 -3.015 140.204 -52.654 -90.792 -1.852 0.370 -3.592 27.814 74.062 -158.895 15 AA_C38A39:U68G69_AA A 38 ? A 69 ? A 39 ? A 68 ? 1 A G 19 1_555 A C 36 1_555 A A 20 1_555 A U 35 1_555 -0.206 -2.025 2.944 1.668 6.017 20.747 -7.330 1.086 2.250 16.238 -4.501 21.656 16 AA_G42A43:U66C67_AA A 42 ? A 67 ? A 43 ? A 66 ? 1 A A 20 1_555 A U 35 1_555 A U 21 1_555 A A 34 1_555 -0.224 -1.522 3.767 -0.401 6.696 31.619 -4.047 0.324 3.385 12.119 0.725 32.305 17 AA_A43U44:A65U66_AA A 43 ? A 66 ? A 44 ? A 65 ? 1 A U 21 1_555 A A 34 1_555 A C 22 1_555 A G 33 1_555 0.133 -2.175 4.243 3.278 10.185 25.157 -7.590 0.678 3.132 22.148 -7.127 27.304 18 AA_U44C45:G64A65_AA A 44 ? A 65 ? A 45 ? A 64 ? 1 A C 22 1_555 A G 33 1_555 A G 23 1_555 A C 31 1_555 2.034 -1.344 4.057 -8.540 8.993 41.262 -2.849 -3.739 3.245 12.427 11.801 43.008 19 AA_C45G46:C62G64_AA A 45 ? A 64 ? A 46 ? A 62 ? 1 A G 23 1_555 A C 31 1_555 A C 24 1_555 A G 30 1_555 -0.420 -1.970 3.674 2.036 17.425 25.829 -6.813 1.149 1.949 34.388 -4.018 31.139 20 AA_G46C47:G61C62_AA A 46 ? A 62 ? A 47 ? A 61 ? 1 A C 24 1_555 A G 30 1_555 A C 25 1_555 A G 29 1_555 -0.160 -1.760 2.810 -1.281 7.003 24.835 -5.477 0.076 2.243 15.872 2.903 25.820 21 AA_C47C48:G60G61_AA A 47 ? A 61 ? A 48 ? A 60 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' 55108516 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 'U54 AI50470' 2 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_soln_scatter.id 1 _pdbx_soln_scatter.type neutron _pdbx_soln_scatter.source_type '12.3.1 (SIBYLS) beam line' _pdbx_soln_scatter.source_class Y _pdbx_soln_scatter.source_beamline 12.3.1 _pdbx_soln_scatter.source_beamline_instrument SIBYLS _pdbx_soln_scatter.detector_type 'Pilatus3 X 2M detector' _pdbx_soln_scatter.detector_specific Dectris _pdbx_soln_scatter.temperature 283 _pdbx_soln_scatter.sample_pH 5.6 _pdbx_soln_scatter.num_time_frames 10 _pdbx_soln_scatter.concentration_range ? _pdbx_soln_scatter.buffer_name '10 mM phosphate, 70 mM NaCl, 0.1 mM EDTA' _pdbx_soln_scatter.data_reduction_software_list ATSAS _pdbx_soln_scatter.data_analysis_software_list Scatter _pdbx_soln_scatter.mean_guiner_radius 2.2 _pdbx_soln_scatter.mean_guiner_radius_esd ? _pdbx_soln_scatter.min_mean_cross_sectional_radii_gyration ? _pdbx_soln_scatter.min_mean_cross_sectional_radii_gyration_esd ? _pdbx_soln_scatter.max_mean_cross_sectional_radii_gyration ? _pdbx_soln_scatter.max_mean_cross_sectional_radii_gyration_esd ? _pdbx_soln_scatter.protein_length ? _pdbx_soln_scatter.entry_id 7T1N # _pdbx_soln_scatter_model.scatter_id 1 _pdbx_soln_scatter_model.id 1 _pdbx_soln_scatter_model.method 'This structure was calculated with XPLOR-NIH with a CYANA input and minimized with SAXS.' _pdbx_soln_scatter_model.software_list ? _pdbx_soln_scatter_model.software_author_list ? _pdbx_soln_scatter_model.entry_fitting_list ? _pdbx_soln_scatter_model.num_conformers_calculated ? _pdbx_soln_scatter_model.num_conformers_submitted ? _pdbx_soln_scatter_model.conformer_selection_criteria ? _pdbx_soln_scatter_model.details ? _pdbx_soln_scatter_model.representative_conformer ? # _atom_sites.entry_id 7T1N _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_