HEADER VIRAL PROTEIN 03-DEC-21 7T27 TITLE STRUCTURE OF PHAGE FBB1 ANTI-CBASS NUCLEASE ACB1-3'3'-CGAMP COMPLEX IN TITLE 2 POST REACTION STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACB1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERWINIA PHAGE FBB1; SOURCE 3 ORGANISM_TAXID: 2776772; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTI-CBASS, NUCLEASE, IMMUNE EVASION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.J.HOBBS,T.WEIN,A.LU,B.R.MOREHOUSE,J.SCHNABEL,R.SOREK,P.J.KRANZUSCH REVDAT 3 28-FEB-24 7T27 1 REMARK REVDAT 2 01-JUN-22 7T27 1 JRNL REVDAT 1 20-APR-22 7T27 0 JRNL AUTH S.J.HOBBS,T.WEIN,A.LU,B.R.MOREHOUSE,J.SCHNABEL,A.LEAVITT, JRNL AUTH 2 E.YIRMIYA,R.SOREK,P.J.KRANZUSCH JRNL TITL PHAGE ANTI-CBASS AND ANTI-PYCSAR NUCLEASES SUBVERT BACTERIAL JRNL TITL 2 IMMUNITY. JRNL REF NATURE V. 605 522 2022 JRNL REFN ESSN 1476-4687 JRNL PMID 35395152 JRNL DOI 10.1038/S41586-022-04716-Y REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 47729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.190 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1700 - 2.8900 1.00 3619 159 0.1701 0.1730 REMARK 3 2 2.8900 - 2.3000 1.00 3387 147 0.1632 0.2072 REMARK 3 3 2.3000 - 2.0100 1.00 3347 146 0.1462 0.1696 REMARK 3 4 2.0100 - 1.8200 1.00 3304 145 0.1533 0.1808 REMARK 3 5 1.8200 - 1.6900 1.00 3302 145 0.1632 0.1662 REMARK 3 6 1.6900 - 1.5900 1.00 3301 144 0.1592 0.1928 REMARK 3 7 1.5900 - 1.5100 1.00 3215 141 0.1694 0.2049 REMARK 3 8 1.5100 - 1.4500 0.99 3284 143 0.1863 0.2028 REMARK 3 9 1.4500 - 1.3900 0.99 3232 141 0.1974 0.2285 REMARK 3 10 1.3900 - 1.3400 0.99 3201 140 0.2065 0.2190 REMARK 3 11 1.3400 - 1.3000 0.98 3210 142 0.2095 0.2579 REMARK 3 12 1.3000 - 1.2600 0.98 3150 137 0.2357 0.2702 REMARK 3 13 1.2600 - 1.2300 0.97 3141 137 0.2558 0.2903 REMARK 3 14 1.2300 - 1.2000 0.94 3036 133 0.3023 0.2778 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.293 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 1219 REMARK 3 ANGLE : 2.138 1672 REMARK 3 CHIRALITY : 0.845 187 REMARK 3 PLANARITY : 0.014 205 REMARK 3 DIHEDRAL : 13.298 438 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6751 16.2355 80.5978 REMARK 3 T TENSOR REMARK 3 T11: 0.1012 T22: 0.0465 REMARK 3 T33: 0.0589 T12: 0.0173 REMARK 3 T13: 0.0045 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.5594 L22: 4.2711 REMARK 3 L33: 3.7514 L12: 1.2955 REMARK 3 L13: 0.8462 L23: 3.9297 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: -0.0244 S13: -0.0820 REMARK 3 S21: 0.1429 S22: 0.0729 S23: -0.0702 REMARK 3 S31: 0.3286 S32: 0.3239 S33: -0.2001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1219 16.0192 62.5698 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.1016 REMARK 3 T33: 0.0665 T12: 0.0380 REMARK 3 T13: -0.0031 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 4.8293 L22: 1.4700 REMARK 3 L33: 1.4226 L12: 1.2751 REMARK 3 L13: -0.2242 L23: -0.7776 REMARK 3 S TENSOR REMARK 3 S11: -0.1923 S12: 0.4240 S13: -0.1194 REMARK 3 S21: -0.1760 S22: 0.1797 S23: -0.1759 REMARK 3 S31: 0.4964 S32: 0.2458 S33: 0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6565 17.4074 79.6774 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: 0.0236 REMARK 3 T33: 0.0608 T12: 0.0069 REMARK 3 T13: -0.0012 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.4195 L22: 0.3332 REMARK 3 L33: 1.9325 L12: 0.0021 REMARK 3 L13: -0.5896 L23: -0.2114 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.0046 S13: -0.0495 REMARK 3 S21: 0.0047 S22: 0.0003 S23: 0.0029 REMARK 3 S31: 0.2426 S32: 0.0998 S33: -0.0085 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3529 28.2123 69.6701 REMARK 3 T TENSOR REMARK 3 T11: 0.0530 T22: 0.0565 REMARK 3 T33: 0.0749 T12: 0.0027 REMARK 3 T13: -0.0132 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.1071 L22: 1.1803 REMARK 3 L33: 1.4478 L12: 0.8352 REMARK 3 L13: -0.7980 L23: -0.3735 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: 0.0240 S13: 0.0695 REMARK 3 S21: 0.0701 S22: -0.0041 S23: 0.0054 REMARK 3 S31: -0.0168 S32: 0.0173 S33: -0.0155 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2252 24.9622 74.0798 REMARK 3 T TENSOR REMARK 3 T11: 0.0635 T22: 0.0473 REMARK 3 T33: 0.0735 T12: 0.0023 REMARK 3 T13: -0.0046 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.4577 L22: 0.4758 REMARK 3 L33: 1.3342 L12: 0.2938 REMARK 3 L13: -0.6510 L23: -0.6538 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 0.0000 S13: 0.0410 REMARK 3 S21: 0.0896 S22: 0.0316 S23: -0.0004 REMARK 3 S31: -0.0944 S32: 0.0423 S33: -0.0615 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8364 16.2675 81.7525 REMARK 3 T TENSOR REMARK 3 T11: 0.1966 T22: 0.1163 REMARK 3 T33: 0.1460 T12: 0.0201 REMARK 3 T13: 0.0256 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.6794 L22: 1.3801 REMARK 3 L33: 3.7320 L12: -0.8401 REMARK 3 L13: -0.5669 L23: -0.0335 REMARK 3 S TENSOR REMARK 3 S11: -0.0775 S12: -0.0684 S13: -0.0936 REMARK 3 S21: -0.2292 S22: 0.0835 S23: -0.4132 REMARK 3 S31: -0.0047 S32: 0.7128 S33: -0.0343 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7T27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47842 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 43.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 16.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.07500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.92250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.92250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.53750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.92250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.92250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 115.61250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.92250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.92250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.53750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.92250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.92250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 115.61250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.07500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 52 REMARK 465 GLY A 53 REMARK 465 LYS A 143 REMARK 465 ASP A 144 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 433 O HOH A 464 1.91 REMARK 500 O ASP A 142 O HOH A 301 1.91 REMARK 500 O HOH A 351 O HOH A 357 1.93 REMARK 500 OG SER A 54 O HOH A 302 1.94 REMARK 500 N SER A 54 O HOH A 303 1.95 REMARK 500 O HOH A 479 O HOH A 482 1.95 REMARK 500 O HOH A 455 O HOH A 485 1.97 REMARK 500 O HOH A 466 O HOH A 481 1.98 REMARK 500 O PHE A 55 O HOH A 304 1.98 REMARK 500 O HOH A 437 O HOH A 506 2.00 REMARK 500 C ASP A 142 O HOH A 301 2.10 REMARK 500 OE1 GLU A 19 O HOH A 305 2.12 REMARK 500 O HOH A 454 O HOH A 478 2.13 REMARK 500 O HOH A 381 O HOH A 504 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 353 O HOH A 436 7566 1.79 REMARK 500 OG SER A 141 OG SER A 141 7556 1.89 REMARK 500 O HOH A 301 O HOH A 318 7556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 99 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 LEU A 128 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 112 95.53 -160.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 520 DISTANCE = 5.83 ANGSTROMS DBREF1 7T27 A 2 144 UNP A0A868BQY3_9CAUD DBREF2 7T27 A A0A868BQY3 10 152 SEQADV 7T27 SER A 1 UNP A0A868BQY CLONING ARTIFACT SEQRES 1 A 144 SER GLY LEU TYR VAL ALA ALA LYS PHE SER GLU SER THR SEQRES 2 A 144 LEU ASP ALA LEU GLU GLU LEU GLN ARG SER LEU LYS LEU SEQRES 3 A 144 PRO ASN PRO VAL PRO ARG ASP LYS LEU HIS THR THR ILE SEQRES 4 A 144 VAL TYR SER ARG VAL ASN VAL PRO TYR LYS VAL ALA SER SEQRES 5 A 144 GLY SER PHE GLU ILE ALA ASP LYS GLY LYS LEU THR VAL SEQRES 6 A 144 PHE GLU THR GLN SER GLY ASN ARG ALA LEU VAL LEU GLU SEQRES 7 A 144 MET ASP SER ASP TYR LEU SER ALA ARG HIS SER TYR ALA SEQRES 8 A 144 LYS ALA LEU GLY ALA SER TYR ASP TYR PRO ASP TYR ARG SEQRES 9 A 144 PRO HIS ILE THR LEU SER TYR ASN ILE GLY VAL LEU ASN SEQRES 10 A 144 PHE SER GLY GLU TYR LYS VAL PRO VAL VAL LEU ASP ARG SEQRES 11 A 144 GLU TYR SER GLU GLU LEU ASP LEU GLU TRP SER ASP LYS SEQRES 12 A 144 ASP HET ECI A 201 69 HET SO4 A 202 5 HETNAM ECI [(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-2- HETNAM 2 ECI [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6- HETNAM 3 ECI OXIDANYLIDENE-1~{H}-PURIN-9-YL)-2-(HYDROXYMETHYL)-4- HETNAM 4 ECI OXIDANYL-OXOLAN-3-YL]OXY-SULFANYL- HETNAM 5 ECI PHOSPHORYL]OXYMETHYL]-4-OXIDANYL-OXOLAN-3-YL]OXY- HETNAM 6 ECI SULFANYL-PHOSPHINIC ACID HETNAM SO4 SULFATE ION FORMUL 2 ECI C20 H26 N10 O12 P2 S2 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *220(H2 O) HELIX 1 AA1 SER A 10 LEU A 24 1 15 HELIX 2 AA2 PRO A 31 LEU A 35 5 5 HELIX 3 AA3 SER A 81 GLY A 95 1 15 SHEET 1 AA1 6 THR A 37 SER A 42 0 SHEET 2 AA1 6 LEU A 3 PHE A 9 -1 N VAL A 5 O ILE A 39 SHEET 3 AA1 6 GLU A 121 GLU A 134 -1 O ARG A 130 N LYS A 8 SHEET 4 AA1 6 GLU A 56 GLU A 67 -1 N ILE A 57 O VAL A 126 SHEET 5 AA1 6 ARG A 73 GLU A 78 -1 O VAL A 76 N THR A 64 SHEET 6 AA1 6 HIS A 106 SER A 110 -1 O LEU A 109 N LEU A 75 CRYST1 43.845 43.845 154.150 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022808 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006487 0.00000