HEADER LYASE 03-DEC-21 7T29 TITLE CRYSTAL STRUCTURE OF ADENYLOSUCCINATE LYASE (ASL) FROM PSEUDOMONAS TITLE 2 AERUGINOSA COMPLEXED WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLOSUCCINATE LYASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PSAEA.17999.A.B1; COMPND 5 SYNONYM: ASL,ADENYLOSUCCINASE,ASASE; COMPND 6 EC: 4.3.2.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 5 / 1C / PRS 101 / PAO1; SOURCE 6 GENE: PURB, PA2629; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSAEA.17999.A.B1 KEYWDS SSGCID, ADENYLOSUCCINATE LYASE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7T29 1 REMARK REVDAT 1 15-DEC-21 7T29 0 JRNL AUTH D.M.DRANOW,J.ABENDROTH,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF ADENYLOSUCCINATE LYASE (ASL) FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA COMPLEXED WITH AMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV-4274 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 74040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8200 - 3.7000 0.99 5006 129 0.1399 0.1569 REMARK 3 2 3.7000 - 2.9400 1.00 4866 142 0.1395 0.2009 REMARK 3 3 2.9400 - 2.5600 1.00 4864 109 0.1410 0.1541 REMARK 3 4 2.5600 - 2.3300 1.00 4778 178 0.1341 0.1504 REMARK 3 5 2.3300 - 2.1600 1.00 4791 138 0.1346 0.1623 REMARK 3 6 2.1600 - 2.0400 1.00 4799 132 0.1398 0.1843 REMARK 3 7 2.0400 - 1.9300 1.00 4791 128 0.1411 0.1802 REMARK 3 8 1.9300 - 1.8500 1.00 4785 136 0.1418 0.1436 REMARK 3 9 1.8500 - 1.7800 1.00 4744 159 0.1535 0.1744 REMARK 3 10 1.7800 - 1.7200 1.00 4752 165 0.1577 0.1821 REMARK 3 11 1.7200 - 1.6600 1.00 4733 147 0.1560 0.2090 REMARK 3 12 1.6600 - 1.6200 1.00 4734 157 0.1599 0.2135 REMARK 3 13 1.6200 - 1.5700 1.00 4763 121 0.1622 0.1721 REMARK 3 14 1.5700 - 1.5300 1.00 4751 155 0.1737 0.2094 REMARK 3 15 1.5300 - 1.5000 1.00 4748 139 0.1814 0.1976 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2847 -9.7102 -3.9599 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.0668 REMARK 3 T33: 0.0985 T12: 0.0056 REMARK 3 T13: 0.0086 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.3432 L22: 0.3283 REMARK 3 L33: 0.8700 L12: -0.0202 REMARK 3 L13: 0.0283 L23: -0.1545 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: 0.0290 S13: -0.0517 REMARK 3 S21: -0.0222 S22: 0.0026 S23: -0.0591 REMARK 3 S31: 0.0547 S32: 0.0665 S33: -0.0017 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 371 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3911 14.2016 -40.3737 REMARK 3 T TENSOR REMARK 3 T11: 0.2364 T22: 0.2882 REMARK 3 T33: 0.1558 T12: -0.0037 REMARK 3 T13: 0.0339 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 0.8670 L22: 2.7971 REMARK 3 L33: 1.6294 L12: 0.7838 REMARK 3 L13: -0.7126 L23: -1.3676 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: 0.3728 S13: 0.2517 REMARK 3 S21: -0.2472 S22: 0.0862 S23: 0.1522 REMARK 3 S31: -0.1384 S32: -0.0573 S33: -0.0592 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -5 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2517 -26.0644 4.5856 REMARK 3 T TENSOR REMARK 3 T11: 0.0996 T22: 0.0526 REMARK 3 T33: 0.1630 T12: 0.0194 REMARK 3 T13: 0.0096 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.9895 L22: 0.8508 REMARK 3 L33: 1.6363 L12: 0.1837 REMARK 3 L13: 0.8523 L23: 0.3485 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: 0.0266 S13: -0.2207 REMARK 3 S21: 0.0046 S22: 0.0407 S23: 0.0308 REMARK 3 S31: 0.0799 S32: 0.0323 S33: -0.0970 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9328 -32.2045 18.1877 REMARK 3 T TENSOR REMARK 3 T11: 0.2318 T22: 0.1453 REMARK 3 T33: 0.3739 T12: 0.0421 REMARK 3 T13: -0.0791 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 0.7054 L22: 0.3702 REMARK 3 L33: 0.7449 L12: -0.1264 REMARK 3 L13: 0.5381 L23: -0.0090 REMARK 3 S TENSOR REMARK 3 S11: 0.1503 S12: -0.1526 S13: -0.5134 REMARK 3 S21: 0.1547 S22: 0.0508 S23: -0.1252 REMARK 3 S31: 0.3626 S32: 0.0334 S33: -0.1636 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1194 -31.0648 24.5375 REMARK 3 T TENSOR REMARK 3 T11: 0.2785 T22: 0.2014 REMARK 3 T33: 0.3471 T12: 0.0474 REMARK 3 T13: -0.1142 T23: 0.1044 REMARK 3 L TENSOR REMARK 3 L11: 0.2950 L22: 1.0224 REMARK 3 L33: 0.3417 L12: -0.5309 REMARK 3 L13: 0.3024 L23: -0.5618 REMARK 3 S TENSOR REMARK 3 S11: 0.2060 S12: -0.3310 S13: -0.4459 REMARK 3 S21: 0.2142 S22: 0.0672 S23: -0.1434 REMARK 3 S31: 0.3953 S32: -0.0465 S33: -0.0770 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7T29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74051 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 33.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.108 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.09 REMARK 200 R MERGE FOR SHELL (I) : 0.56200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7T24 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PSAEA.17999.A.B1.PW38925 AT 24 MG/ML REMARK 280 INCUBATED WITH 4 MM AMP AND FUMARATE, MIXED 1:1 WITH MCSG1(E4): REMARK 280 0.2 M LITHIUM SULFATE, 0.1 M TRIS:HCL, PH=8.5, 25% (W/V) PEG REMARK 280 3350. PUCK: EMV3-7, BARCODE: 320112E4., PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.43500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.57500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.89500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.43500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.57500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.89500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.43500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.57500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.89500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.43500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.57500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.89500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -70.87000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -70.87000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NE2 GLN A 323 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 948 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 974 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1081 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1112 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1148 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 SER A 296 REMARK 465 SER A 297 REMARK 465 THR A 298 REMARK 465 MET A 299 REMARK 465 PRO A 300 REMARK 465 HIS A 301 REMARK 465 LYS A 302 REMARK 465 GLY A 412 REMARK 465 LYS A 413 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -5 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 ILE A 294 CG1 CG2 CD1 REMARK 470 GLU A 400 CG CD OE1 OE2 REMARK 470 ASN A 401 CG OD1 ND2 REMARK 470 TYR A 403 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 ARG A 411 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 712 O HOH A 861 2.10 REMARK 500 OE1 GLU A 202 O HOH A 601 2.12 REMARK 500 O HOH A 893 O HOH A 1039 2.14 REMARK 500 O HOH A 627 O HOH A 885 2.16 REMARK 500 O HOH A 979 O HOH A 1139 2.16 REMARK 500 O HOH A 640 O HOH A 1008 2.17 REMARK 500 O HOH A 942 O HOH A 1039 2.18 REMARK 500 O HOH A 829 O HOH A 1094 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLN A 323 NE2 GLN A 323 4555 1.34 REMARK 500 O HOH A 602 O HOH A 687 4555 1.88 REMARK 500 O HOH A 1090 O HOH A 1105 7444 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 273 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -4 72.14 -110.18 REMARK 500 ASP A 73 55.81 -140.16 REMARK 500 VAL A 142 -55.39 -123.25 REMARK 500 ASN A 208 17.49 -155.24 REMARK 500 THR A 247 -146.19 -93.86 REMARK 500 HIS A 252 8.57 83.41 REMARK 500 TRP A 334 -128.18 51.99 REMARK 500 ARG A 336 152.29 153.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 333 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1148 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1149 DISTANCE = 6.75 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PSAEA.17999.A RELATED DB: TARGETTRACK DBREF 7T29 A 1 456 UNP Q9I0K9 PUR8_PSEAE 1 456 SEQADV 7T29 MET A -7 UNP Q9I0K9 EXPRESSION TAG SEQADV 7T29 ALA A -6 UNP Q9I0K9 EXPRESSION TAG SEQADV 7T29 HIS A -5 UNP Q9I0K9 EXPRESSION TAG SEQADV 7T29 HIS A -4 UNP Q9I0K9 EXPRESSION TAG SEQADV 7T29 HIS A -3 UNP Q9I0K9 EXPRESSION TAG SEQADV 7T29 HIS A -2 UNP Q9I0K9 EXPRESSION TAG SEQADV 7T29 HIS A -1 UNP Q9I0K9 EXPRESSION TAG SEQADV 7T29 HIS A 0 UNP Q9I0K9 EXPRESSION TAG SEQRES 1 A 464 MET ALA HIS HIS HIS HIS HIS HIS MET GLN LEU SER SER SEQRES 2 A 464 LEU THR ALA VAL SER PRO VAL ASP GLY ARG TYR ALA GLY SEQRES 3 A 464 LYS THR SER SER LEU ARG PRO ILE PHE SER GLU TYR GLY SEQRES 4 A 464 LEU ILE ARG PHE ARG VAL MET VAL GLU VAL ARG TRP LEU SEQRES 5 A 464 GLN ARG LEU ALA ALA HIS ALA GLY ILE PRO GLU VAL ALA SEQRES 6 A 464 PRO PHE SER ALA GLU ALA ASN ALA LEU LEU ASP SER LEU SEQRES 7 A 464 ALA SER ASP PHE GLN LEU GLU HIS ALA GLU ARG ILE LYS SEQRES 8 A 464 GLU ILE GLU ARG THR THR ASN HIS ASP VAL LYS ALA VAL SEQRES 9 A 464 GLU TYR LEU LEU LYS GLU GLN ALA ALA LYS LEU PRO GLU SEQRES 10 A 464 LEU ALA ALA VAL SER GLU PHE ILE HIS PHE ALA CYS THR SEQRES 11 A 464 SER GLU ASP ILE ASN ASN LEU SER HIS ALA LEU MET LEU SEQRES 12 A 464 ARG GLU GLY ARG ASP SER VAL LEU LEU PRO LEU MET ARG SEQRES 13 A 464 GLN ILE ALA GLU ALA ILE ARG GLU LEU ALA VAL LYS LEU SEQRES 14 A 464 ALA ASP VAL PRO MET LEU SER ARG THR HIS GLY GLN PRO SEQRES 15 A 464 ALA SER PRO THR THR LEU GLY LYS GLU LEU ALA ASN VAL SEQRES 16 A 464 VAL TYR ARG LEU GLU ARG GLN ILE LYS GLN VAL ALA GLY SEQRES 17 A 464 ILE GLU LEU LEU GLY LYS ILE ASN GLY ALA VAL GLY ASN SEQRES 18 A 464 TYR ASN ALA HIS LEU SER ALA TYR PRO GLU VAL ASP TRP SEQRES 19 A 464 GLU ALA ASN ALA ARG GLN PHE ILE GLU GLY ASP LEU GLY SEQRES 20 A 464 LEU THR PHE ASN PRO TYR THR THR GLN ILE GLU PRO HIS SEQRES 21 A 464 ASP TYR ILE ALA GLU LEU PHE ASP ALA ILE ALA ARG PHE SEQRES 22 A 464 ASN THR ILE LEU ILE ASP PHE ASP ARG ASP VAL TRP GLY SEQRES 23 A 464 TYR ILE SER LEU GLY TYR PHE LYS GLN LYS THR VAL ALA SEQRES 24 A 464 GLY GLU ILE GLY SER SER THR MET PRO HIS LYS VAL ASN SEQRES 25 A 464 PRO ILE ASP PHE GLU ASN SER GLU GLY ASN LEU GLY ILE SEQRES 26 A 464 ALA ASN ALA LEU PHE GLN HIS LEU ALA SER LYS LEU PRO SEQRES 27 A 464 ILE SER ARG TRP GLN ARG ASP LEU THR ASP SER THR VAL SEQRES 28 A 464 LEU ARG ASN LEU GLY VAL GLY ILE ALA HIS SER ILE ILE SEQRES 29 A 464 ALA TYR GLU ALA SER LEU LYS GLY ILE GLY LYS LEU GLU SEQRES 30 A 464 LEU ASN ALA GLN ARG ILE ALA GLU ASP LEU ASP ALA CYS SEQRES 31 A 464 TRP GLU VAL LEU ALA GLU PRO VAL GLN THR VAL MET ARG SEQRES 32 A 464 ARG TYR GLY VAL GLU ASN PRO TYR GLU LYS LEU LYS GLU SEQRES 33 A 464 LEU THR ARG GLY LYS GLY ILE SER ALA GLU ALA LEU GLN SEQRES 34 A 464 THR PHE ILE GLU GLU LEU ALA ILE PRO ALA GLU ALA LYS SEQRES 35 A 464 VAL GLU LEU LYS LYS LEU THR PRO ALA GLY TYR VAL GLY SEQRES 36 A 464 ASN ALA ALA ALA GLN ALA LYS ARG ILE HET AMP A 501 23 HET EDO A 502 4 HET EDO A 503 4 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *549(H2 O) HELIX 1 AA1 TYR A 16 SER A 21 1 6 HELIX 2 AA2 LEU A 23 SER A 28 1 6 HELIX 3 AA3 SER A 28 HIS A 50 1 23 HELIX 4 AA4 SER A 60 ASP A 73 1 14 HELIX 5 AA5 GLN A 75 ASN A 90 1 16 HELIX 6 AA6 HIS A 91 ALA A 105 1 15 HELIX 7 AA7 LEU A 107 ALA A 112 1 6 HELIX 8 AA8 VAL A 113 ILE A 117 5 5 HELIX 9 AA9 THR A 122 VAL A 142 1 21 HELIX 10 AB1 VAL A 142 LEU A 161 1 20 HELIX 11 AB2 LEU A 180 ILE A 201 1 22 HELIX 12 AB3 TYR A 214 TYR A 221 1 8 HELIX 13 AB4 ASP A 225 GLY A 236 1 12 HELIX 14 AB5 HIS A 252 LEU A 282 1 31 HELIX 15 AB6 PRO A 305 LEU A 329 1 25 HELIX 16 AB7 LEU A 338 ARG A 345 1 8 HELIX 17 AB8 ASN A 346 LYS A 367 1 22 HELIX 18 AB9 ASN A 371 ALA A 381 1 11 HELIX 19 AC1 CYS A 382 VAL A 385 5 4 HELIX 20 AC2 LEU A 386 TYR A 397 1 12 HELIX 21 AC3 ASN A 401 ARG A 411 1 11 HELIX 22 AC4 SER A 416 LEU A 427 1 12 HELIX 23 AC5 PRO A 430 LEU A 440 1 11 HELIX 24 AC6 ASN A 448 ARG A 455 1 8 SHEET 1 AA1 2 PRO A 165 THR A 170 0 SHEET 2 AA1 2 GLN A 173 THR A 179 -1 O THR A 178 N MET A 166 SHEET 1 AA2 2 LEU A 204 GLY A 205 0 SHEET 2 AA2 2 THR A 241 PHE A 242 1 O THR A 241 N GLY A 205 SHEET 1 AA3 2 PHE A 285 GLN A 287 0 SHEET 2 AA3 2 LEU A 368 LEU A 370 -1 O GLU A 369 N LYS A 286 CRYST1 70.870 73.150 177.790 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014110 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005625 0.00000