HEADER OXIDOREDUCTASE 11-DEC-21 7T5D TITLE NEUTRON STRUCTURE OF NEUROSPORA CRASSA LYTIC POLYSACCHARIDE TITLE 2 MONOOXYGENASE 9D (NCLPMO9D) ASCORBATE SOAK COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYTIC POLYSACCHARIDE MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RELATED TO CEL1 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 GENE: G15G9.090, GE21DRAFT_7469; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SUPERMAN5 KEYWDS LPMO, MONOOXYGENASE, OXIDOREDUCTASE, PMO, METALLOPROTEINS, COPPER EXPDTA NEUTRON DIFFRACTION AUTHOR G.C.SCHRODER,F.MEILLEUR REVDAT 2 25-OCT-23 7T5D 1 REMARK REVDAT 1 28-DEC-22 7T5D 0 JRNL AUTH G.C.SCHRODER,W.B.O'DELL,S.P.WEBB,P.K.AGARWAL,F.MEILLEUR JRNL TITL CAPTURE OF ACTIVATED DIOXYGEN INTERMEDIATES AT THE JRNL TITL 2 COPPER-ACTIVE SITE OF A LYTIC POLYSACCHARIDE MONOOXYGENASE. JRNL REF CHEM SCI V. 13 13303 2022 JRNL REFN ISSN 2041-6520 JRNL PMID 36507176 JRNL DOI 10.1039/D2SC05031E REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.C.SCHRODER,W.B.O'DELL,P.D.SWARTZ,F.MEILLEUR REMARK 1 TITL PRELIMINARY RESULTS OF NEUTRON AND X-RAY DIFFRACTION DATA REMARK 1 TITL 2 COLLECTION ON A LYTIC POLYSACCHARIDE MONOOXYGENASE UNDER REMARK 1 TITL 3 REDUCED AND ACIDIC CONDITIONS. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 77 128 2021 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 DOI 10.1107/S2053230X21002399 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 14167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.7909 - 4.0808 0.92 2764 143 0.1927 0.2866 REMARK 3 2 4.0808 - 3.2504 0.97 2862 156 0.2221 0.2790 REMARK 3 3 3.2504 - 2.8428 0.94 2731 145 0.2430 0.3266 REMARK 3 4 2.8428 - 2.5844 0.90 2623 140 0.2758 0.3593 REMARK 3 5 2.5844 - 2.4000 0.85 2477 126 0.2858 0.3599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7494 REMARK 3 ANGLE : 0.689 12422 REMARK 3 CHIRALITY : 0.050 524 REMARK 3 PLANARITY : 0.004 1258 REMARK 3 DIHEDRAL : 17.575 1799 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7T5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261513. REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 15-NOV-18 REMARK 230 TEMPERATURE (KELVIN) : 100.0 REMARK 230 PH : 6.00 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : SPALLATION SOURCE REMARK 230 BEAMLINE : MANDI REMARK 230 WAVELENGTH OR RANGE (A) : 2.0-4.0 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : DIFFRACTOMETER REMARK 230 DETECTOR MANUFACTURER : ORNL ANGER CAMERA REMARK 230 INTENSITY-INTEGRATION SOFTWARE : MANTID REMARK 230 DATA SCALING SOFTWARE : LAUEVIEW REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 14168 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 230 RESOLUTION RANGE LOW (A) : 14.791 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 230 DATA REDUNDANCY : 3.200 REMARK 230 R MERGE (I) : 0.18510 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 7.1500 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 230 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 230 DATA REDUNDANCY IN SHELL : 2.30 REMARK 230 R MERGE FOR SHELL (I) : 0.27370 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : 2.280 REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : PHASER REMARK 230 STARTING MODEL: 5TKH REMARK 230 REMARK 230 REMARK: CRYSTALS FORM RECTANGULAR SHAPES. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, HEPES, PH 6, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.09000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 12 CG1 CG2 REMARK 470 VAL A 46 CG1 CG2 REMARK 470 SER A 48 OG REMARK 470 SER A 50 OG REMARK 470 MET A 68 CG SD CE REMARK 470 SER A 70 OG REMARK 470 SER A 75 OG REMARK 470 MET A 80 CG SD CE REMARK 470 SER A 102 OG REMARK 470 VAL A 104 CG1 CG2 REMARK 470 MET A 116 CG SD CE REMARK 470 SER A 160 OG REMARK 470 ASN A 161 CG OD1 ND2 REMARK 470 VAL A 177 CG1 CG2 REMARK 470 SER A 186 OG REMARK 470 SER A 197 OG REMARK 470 SER A 204 OG REMARK 470 VAL A 210 CG1 CG2 REMARK 470 SER A 212 OG REMARK 470 SER A 219 OG REMARK 470 THR A 222 OG1 CG2 REMARK 470 VAL B 9 CG1 CG2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 SER B 48 OG REMARK 470 THR B 54 OG1 CG2 REMARK 470 MET B 68 CG SD CE REMARK 470 VAL B 104 CG1 CG2 REMARK 470 MET B 116 CG SD CE REMARK 470 SER B 118 OG REMARK 470 SER B 119 OG REMARK 470 VAL B 121 CG1 CG2 REMARK 470 SER B 135 OG REMARK 470 SER B 160 OG REMARK 470 ASN B 161 CG OD1 ND2 REMARK 470 MET B 169 CG SD CE REMARK 470 SER B 186 OG REMARK 470 SER B 195 OG REMARK 470 SER B 197 OG REMARK 470 VAL B 201 CG1 CG2 REMARK 470 ILE B 205 CG1 CG2 CD1 REMARK 470 SER B 212 OG REMARK 470 THR B 214 OG1 CG2 REMARK 470 VAL B 220 CG1 CG2 REMARK 470 THR B 222 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 DE22 GLN B 166 O HOH B 401 1.15 REMARK 500 D1 HOH B 476 O HOH B 565 1.29 REMARK 500 H LYS B 131 O HOH B 402 1.31 REMARK 500 D LYS B 131 O HOH B 402 1.31 REMARK 500 H GLY A 19 DG1 THR A 49 1.34 REMARK 500 D GLY A 19 DG1 THR A 49 1.34 REMARK 500 D1 HOH A 461 O HOH A 503 1.39 REMARK 500 O PRO A 208 D2 HOH A 401 1.44 REMARK 500 O VAL A 52 D2 HOH A 403 1.46 REMARK 500 O ALA B 158 D2 HOH B 413 1.53 REMARK 500 DD22 ASN A 26 O TYR A 67 1.55 REMARK 500 H ALA A 57 O VAL A 177 1.55 REMARK 500 D ALA A 57 O VAL A 177 1.55 REMARK 500 O HOH A 420 D1 HOH A 438 1.56 REMARK 500 O VAL A 215 D1 HOH A 407 1.56 REMARK 500 OD1 ASP A 114 DH22 ARG A 126 1.58 REMARK 500 DH11 ARG B 21 O ALA B 101 1.59 REMARK 500 O VAL A 22 D1 HOH A 420 1.60 REMARK 500 O LEU B 69 D1 HOH B 425 1.60 REMARK 500 O HOH A 420 O HOH A 438 1.78 REMARK 500 O SER A 204 O HOH A 401 2.02 REMARK 500 O HOH A 435 O HOH A 443 2.06 REMARK 500 O HOH A 497 O HOH A 566 2.09 REMARK 500 OD1 ASN A 106 OG SER A 189 2.09 REMARK 500 O HOH B 478 O HOH B 487 2.10 REMARK 500 NE2 GLN B 166 O HOH B 401 2.14 REMARK 500 O HOH B 512 O HOH B 559 2.14 REMARK 500 O HOH A 553 O HOH A 597 2.15 REMARK 500 O HOH A 538 O HOH A 589 2.15 REMARK 500 O HOH B 457 O HOH B 520 2.16 REMARK 500 N LYS B 131 O HOH B 402 2.18 REMARK 500 CG ASN A 60 C1 NAG C 1 2.18 REMARK 500 O HOH B 465 O HOH B 522 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 582 O HOH B 537 2559 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 49.06 -85.55 REMARK 500 ASN A 40 -179.98 61.11 REMARK 500 VAL A 79 -71.79 -90.68 REMARK 500 ALA A 158 34.65 -147.57 REMARK 500 VAL A 188 -167.75 -117.90 REMARK 500 VAL A 201 -75.75 -81.47 REMARK 500 THR A 211 -34.87 -131.56 REMARK 500 ASN B 26 39.37 -92.30 REMARK 500 ALA B 38 -72.38 -72.08 REMARK 500 ASN B 40 165.16 63.78 REMARK 500 SER B 42 127.16 -36.73 REMARK 500 VAL B 79 -62.51 -107.34 REMARK 500 MET B 80 135.95 -171.69 REMARK 500 THR B 100 -16.82 -141.83 REMARK 500 VAL B 201 -76.23 -80.97 REMARK 500 PRO B 209 94.75 -52.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 58 -12.00 REMARK 500 ASN B 60 -11.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 617 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 618 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 619 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH B 591 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 592 DISTANCE = 7.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 N REMARK 620 2 HIS A 1 ND1 95.6 REMARK 620 3 HIS A 84 NE2 88.2 162.4 REMARK 620 4 TYR A 168 OH 78.5 96.1 101.5 REMARK 620 5 PEO A 302 O1 156.5 106.7 73.0 91.3 REMARK 620 6 OXY A 303 O1 161.5 102.3 76.2 94.8 5.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 1 N REMARK 620 2 HIS B 1 ND1 98.5 REMARK 620 3 HIS B 84 NE2 98.4 156.0 REMARK 620 4 TYR B 168 OH 71.7 93.6 107.9 REMARK 620 5 HOH B 422 O 105.6 73.4 85.7 166.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7T5C RELATED DB: PDB REMARK 900 RELATED LPMO X-RAY STRUCTURE FOR PDB DEPOSITION REMARK 900 RELATED ID: 7T5E RELATED DB: PDB REMARK 900 RELATED LPMO JOINT X-RAY NEUTRON STRUCTURE FOR PDB DEPOSITION DBREF 7T5D A 1 223 UNP Q8WZQ2 Q8WZQ2_NEUCS 16 238 DBREF 7T5D B 1 223 UNP Q8WZQ2 Q8WZQ2_NEUCS 16 238 SEQRES 1 A 223 HIS THR ILE PHE SER SER LEU GLU VAL ASN GLY VAL ASN SEQRES 2 A 223 GLN GLY LEU GLY GLU GLY VAL ARG VAL PRO THR TYR ASN SEQRES 3 A 223 GLY PRO ILE GLU ASP VAL THR SER ALA SER ILE ALA CYS SEQRES 4 A 223 ASN GLY SER PRO ASN THR VAL ALA SER THR SER LYS VAL SEQRES 5 A 223 ILE THR VAL GLN ALA GLY THR ASN VAL THR ALA ILE TRP SEQRES 6 A 223 ARG TYR MET LEU SER THR THR GLY ASP SER PRO ALA ASP SEQRES 7 A 223 VAL MET ASP SER SER HIS LYS GLY PRO THR ILE ALA TYR SEQRES 8 A 223 LEU LYS LYS VAL ASP ASN ALA ALA THR ALA SER GLY VAL SEQRES 9 A 223 GLY ASN GLY TRP PHE LYS ILE GLN GLN ASP GLY MET ASP SEQRES 10 A 223 SER SER GLY VAL TRP GLY THR GLU ARG VAL ILE ASN GLY SEQRES 11 A 223 LYS GLY ARG HIS SER ILE LYS ILE PRO GLU CYS ILE ALA SEQRES 12 A 223 PRO GLY GLN TYR LEU LEU ARG ALA GLU MET ILE ALA LEU SEQRES 13 A 223 HIS ALA ALA SER ASN TYR PRO GLY ALA GLN PHE TYR MET SEQRES 14 A 223 GLU CYS ALA GLN LEU ASN VAL VAL GLY GLY THR GLY ALA SEQRES 15 A 223 LYS THR PRO SER THR VAL SER PHE PRO GLY ALA TYR SER SEQRES 16 A 223 GLY SER ASP PRO GLY VAL LYS ILE SER ILE TYR TRP PRO SEQRES 17 A 223 PRO VAL THR SER TYR THR VAL PRO GLY PRO SER VAL PHE SEQRES 18 A 223 THR CYS SEQRES 1 B 223 HIS THR ILE PHE SER SER LEU GLU VAL ASN GLY VAL ASN SEQRES 2 B 223 GLN GLY LEU GLY GLU GLY VAL ARG VAL PRO THR TYR ASN SEQRES 3 B 223 GLY PRO ILE GLU ASP VAL THR SER ALA SER ILE ALA CYS SEQRES 4 B 223 ASN GLY SER PRO ASN THR VAL ALA SER THR SER LYS VAL SEQRES 5 B 223 ILE THR VAL GLN ALA GLY THR ASN VAL THR ALA ILE TRP SEQRES 6 B 223 ARG TYR MET LEU SER THR THR GLY ASP SER PRO ALA ASP SEQRES 7 B 223 VAL MET ASP SER SER HIS LYS GLY PRO THR ILE ALA TYR SEQRES 8 B 223 LEU LYS LYS VAL ASP ASN ALA ALA THR ALA SER GLY VAL SEQRES 9 B 223 GLY ASN GLY TRP PHE LYS ILE GLN GLN ASP GLY MET ASP SEQRES 10 B 223 SER SER GLY VAL TRP GLY THR GLU ARG VAL ILE ASN GLY SEQRES 11 B 223 LYS GLY ARG HIS SER ILE LYS ILE PRO GLU CYS ILE ALA SEQRES 12 B 223 PRO GLY GLN TYR LEU LEU ARG ALA GLU MET ILE ALA LEU SEQRES 13 B 223 HIS ALA ALA SER ASN TYR PRO GLY ALA GLN PHE TYR MET SEQRES 14 B 223 GLU CYS ALA GLN LEU ASN VAL VAL GLY GLY THR GLY ALA SEQRES 15 B 223 LYS THR PRO SER THR VAL SER PHE PRO GLY ALA TYR SER SEQRES 16 B 223 GLY SER ASP PRO GLY VAL LYS ILE SER ILE TYR TRP PRO SEQRES 17 B 223 PRO VAL THR SER TYR THR VAL PRO GLY PRO SER VAL PHE SEQRES 18 B 223 THR CYS HET NAG C 1 27 HET NAG C 2 28 HET NAG D 1 27 HET NAG D 2 29 HET CU A 301 1 HET PEO A 302 3 HET OXY A 303 2 HET CU B 301 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CU COPPER (II) ION HETNAM PEO HYDROGEN PEROXIDE HETNAM OXY OXYGEN MOLECULE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 CU 2(CU 2+) FORMUL 6 PEO H2 O2 FORMUL 7 OXY O2 FORMUL 9 HOH *413(H2 O) HELIX 1 AA1 SER A 34 ALA A 38 5 5 HELIX 2 AA2 SER A 75 MET A 80 1 6 HELIX 3 AA3 TRP A 122 ASN A 129 1 8 HELIX 4 AA4 SER B 34 ALA B 38 5 5 HELIX 5 AA5 SER B 75 VAL B 79 5 5 HELIX 6 AA6 GLY B 123 ASN B 129 1 7 SHEET 1 AA1 4 VAL A 12 ASN A 13 0 SHEET 2 AA1 4 ILE A 3 VAL A 9 -1 N VAL A 9 O VAL A 12 SHEET 3 AA1 4 ASN A 60 ARG A 66 -1 O ARG A 66 N ILE A 3 SHEET 4 AA1 4 ARG A 133 LYS A 137 -1 O ILE A 136 N VAL A 61 SHEET 1 AA2 3 VAL A 20 ARG A 21 0 SHEET 2 AA2 3 GLN A 166 VAL A 177 -1 O CYS A 171 N ARG A 21 SHEET 3 AA2 3 ILE A 53 GLN A 56 1 N VAL A 55 O VAL A 177 SHEET 1 AA3 6 VAL A 20 ARG A 21 0 SHEET 2 AA3 6 GLN A 166 VAL A 177 -1 O CYS A 171 N ARG A 21 SHEET 3 AA3 6 GLY A 145 ALA A 155 -1 N LEU A 149 O ALA A 172 SHEET 4 AA3 6 THR A 88 LYS A 94 -1 N ILE A 89 O GLU A 152 SHEET 5 AA3 6 GLY A 105 ASP A 114 -1 O ASP A 114 N THR A 88 SHEET 6 AA3 6 VAL A 188 PHE A 190 -1 O VAL A 188 N TRP A 108 SHEET 1 AA4 4 VAL B 12 ASN B 13 0 SHEET 2 AA4 4 ILE B 3 VAL B 9 -1 N VAL B 9 O VAL B 12 SHEET 3 AA4 4 ASN B 60 ARG B 66 -1 O ARG B 66 N ILE B 3 SHEET 4 AA4 4 ARG B 133 LYS B 137 -1 O HIS B 134 N ALA B 63 SHEET 1 AA5 3 VAL B 20 ARG B 21 0 SHEET 2 AA5 3 GLN B 166 VAL B 177 -1 O CYS B 171 N ARG B 21 SHEET 3 AA5 3 ILE B 53 GLN B 56 1 N ILE B 53 O GLN B 173 SHEET 1 AA6 6 VAL B 20 ARG B 21 0 SHEET 2 AA6 6 GLN B 166 VAL B 177 -1 O CYS B 171 N ARG B 21 SHEET 3 AA6 6 GLY B 145 ALA B 155 -1 N ALA B 155 O GLN B 166 SHEET 4 AA6 6 THR B 88 LYS B 94 -1 N ILE B 89 O GLU B 152 SHEET 5 AA6 6 GLY B 105 ASP B 114 -1 O ILE B 111 N ALA B 90 SHEET 6 AA6 6 VAL B 188 PHE B 190 -1 O VAL B 188 N TRP B 108 SSBOND 1 CYS A 39 CYS A 171 1555 1555 2.03 SSBOND 2 CYS A 141 CYS A 223 1555 1555 2.03 SSBOND 3 CYS B 39 CYS B 171 1555 1555 2.03 SSBOND 4 CYS B 141 CYS B 223 1555 1555 2.03 LINK ND2 ASN A 60 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN B 60 C1 NAG D 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK N HIS A 1 CU CU A 301 1555 1555 2.20 LINK ND1 HIS A 1 CU CU A 301 1555 1555 1.97 LINK NE2 HIS A 84 CU CU A 301 1555 1555 1.99 LINK OH TYR A 168 CU CU A 301 1555 1555 2.67 LINK CU CU A 301 O1 APEO A 302 1555 1555 1.98 LINK CU CU A 301 O1 BOXY A 303 1555 1555 1.96 LINK N HIS B 1 CU CU B 301 1555 1555 2.22 LINK ND1 HIS B 1 CU CU B 301 1555 1555 1.89 LINK NE2 HIS B 84 CU CU B 301 1555 1555 1.90 LINK OH TYR B 168 CU CU B 301 1555 1555 2.64 LINK CU CU B 301 O HOH B 422 1555 1555 2.24 CISPEP 1 SER A 42 PRO A 43 0 1.69 CISPEP 2 TYR A 162 PRO A 163 0 -0.94 CISPEP 3 PHE A 190 PRO A 191 0 -1.41 CISPEP 4 TRP A 207 PRO A 208 0 -2.68 CISPEP 5 SER B 42 PRO B 43 0 4.77 CISPEP 6 TYR B 162 PRO B 163 0 0.49 CISPEP 7 PHE B 190 PRO B 191 0 0.35 CISPEP 8 TRP B 207 PRO B 208 0 -3.92 CRYST1 67.730 42.180 69.760 90.00 99.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014765 0.000000 0.002338 0.00000 SCALE2 0.000000 0.023708 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014514 0.00000