HEADER OXIDOREDUCTASE 11-DEC-21 7T5E TITLE NEUTRON STRUCTURE OF NEUROSPORA CRASSA POLYSACCHARIDE MONOOXYGENASE 9D TITLE 2 (NCLPMO9D) LOW PH VAPOR EXCHANGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYTIC POLYSACCHARIDE MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RELATED TO CEL1 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 GENE: G15G9.090, GE21DRAFT_7469; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SUPERMAN5 KEYWDS LPMO, MONOOXYGENASE, OXIDOREDUCTASE, PMO, METALLOPROTEINS EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR G.C.SCHRODER,F.MEILLEUR REVDAT 2 03-APR-24 7T5E 1 REMARK REVDAT 1 28-DEC-22 7T5E 0 JRNL AUTH G.C.SCHRODER,W.B.O'DELL,S.P.WEBB,P.K.AGARWAL,F.MEILLEUR JRNL TITL CAPTURE OF ACTIVATED DIOXYGEN INTERMEDIATES AT THE JRNL TITL 2 COPPER-ACTIVE SITE OF A LYTIC POLYSACCHARIDE MONOOXYGENASE. JRNL REF CHEM SCI V. 13 13303 2022 JRNL REFN ISSN 2041-6520 JRNL PMID 36507176 JRNL DOI 10.1039/D2SC05031E REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.C.SCHRODER,W.B.O'DELL,P.D.SWARTZ,F.MEILLEUR REMARK 1 TITL PRELIMINARY RESULTS OF NEUTRON AND X-RAY DIFFRACTION DATA REMARK 1 TITL 2 COLLECTION ON A LYTIC POLYSACCHARIDE MONOOXYGENASE UNDER REMARK 1 TITL 3 REDUCED AND ACIDIC CONDITIONS. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 77 128 2021 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 DOI 10.1107/S2053230X21002399 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 30948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 12.6620 - 4.1790 0.99 2783 148 0.1005 0.1208 REMARK 3 2 4.1790 - 3.3370 0.99 2751 132 0.1018 0.1600 REMARK 3 3 3.3370 - 2.9211 0.99 2738 135 0.1320 0.1934 REMARK 3 4 2.9211 - 2.6567 1.00 2702 147 0.1371 0.1983 REMARK 3 5 2.6567 - 2.4678 0.99 2696 151 0.1415 0.2110 REMARK 3 6 2.4678 - 2.3232 0.99 2666 143 0.1389 0.1991 REMARK 3 7 2.3232 - 2.2075 0.99 2660 132 0.1460 0.2224 REMARK 3 8 2.2075 - 2.1119 0.99 2661 168 0.1423 0.1888 REMARK 3 9 2.1119 - 2.0309 0.98 2683 126 0.1478 0.2215 REMARK 3 10 2.0309 - 1.9611 0.96 2575 142 0.1585 0.2336 REMARK 3 11 1.9611 - 1.9000 0.91 2476 133 0.1647 0.2554 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8106 REMARK 3 ANGLE : 1.322 13628 REMARK 3 CHIRALITY : 0.071 571 REMARK 3 PLANARITY : 0.007 1339 REMARK 3 DIHEDRAL : 21.053 2075 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 3 NUMBER OF REFLECTIONS : 18770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.6490 - 4.0764 0.87 2685 136 0.1174 0.1664 REMARK 3 2 4.0764 - 3.2472 0.89 2669 139 0.1350 0.2127 REMARK 3 3 3.2472 - 2.8401 0.88 2635 123 0.1469 0.2232 REMARK 3 4 2.8401 - 2.5820 0.85 2540 125 0.1570 0.2298 REMARK 3 5 2.5820 - 2.3978 0.84 2501 154 0.1783 0.2691 REMARK 3 6 2.3978 - 2.2569 0.85 2532 115 0.1944 0.2790 REMARK 3 7 2.2569 - 2.1443 0.77 2254 162 0.2088 0.2989 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7T5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30950 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 12.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.11520 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5TKH REMARK 200 REMARK 200 REMARK: CRYSTALS FORM RECTANGULAR SHAPES. REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 17-JUL-18 REMARK 230 TEMPERATURE (KELVIN) : 295.0 REMARK 230 PH : 4.40 REMARK 230 NUMBER OF CRYSTALS USED : NULL REMARK 230 REMARK 230 NEUTRON SOURCE : SPALLATION SOURCE REMARK 230 BEAMLINE : MANDI REMARK 230 WAVELENGTH OR RANGE (A) : 2-4 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : DIFFRACTOMETER REMARK 230 DETECTOR MANUFACTURER : ORNL ANGER CAMERA REMARK 230 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 230 DATA SCALING SOFTWARE : AIMLESS, LAUEVIEW REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 18963 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 230 RESOLUTION RANGE LOW (A) : 14.650 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 230 DATA REDUNDANCY : 4.000 REMARK 230 R MERGE (I) : 0.15320 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 10.0100 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 230 COMPLETENESS FOR SHELL (%) : 74.8 REMARK 230 DATA REDUNDANCY IN SHELL : 3.30 REMARK 230 R MERGE FOR SHELL (I) : 0.32800 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : 3.020 REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : PHASER REMARK 230 STARTING MODEL: 5TKH REMARK 230 REMARK 230 REMARK: CRYSTALS FORM RECTANGULAR SHAPES. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, HEPES, PH 4.4, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.13450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 96 OD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 206 O HOH B 402 1.29 REMARK 500 DH TYR B 206 O HOH B 402 1.30 REMARK 500 DD22 ASN B 60 DG SER B 135 1.37 REMARK 500 DH TYR B 162 O HOH B 406 1.47 REMARK 500 H ASN A 106 O HOH A 416 1.55 REMARK 500 D ASN A 106 O HOH A 416 1.56 REMARK 500 D2 HOH B 509 O HOH B 579 1.56 REMARK 500 O SER A 102 D2 HOH A 403 1.56 REMARK 500 O ALA A 143 HH TYR A 147 1.57 REMARK 500 O ALA A 143 DH TYR A 147 1.57 REMARK 500 OD2 ASP A 81 DG SER A 83 1.59 REMARK 500 OE1 GLU A 152 DH TYR A 194 1.59 REMARK 500 O TYR A 25 DD21 ASN A 44 1.60 REMARK 500 O4 NAG C 2 C2 MAN C 3 2.10 REMARK 500 O HOH A 552 O HOH B 541 2.15 REMARK 500 O HOH A 477 O HOH A 563 2.16 REMARK 500 O THR A 71 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 40 178.05 69.19 REMARK 500 VAL A 79 -62.72 -103.99 REMARK 500 ASN B 40 -178.87 67.22 REMARK 500 VAL B 79 -64.09 -108.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 102 GLY A 103 147.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 N REMARK 620 2 HIS A 1 ND1 96.0 REMARK 620 3 HIS A 84 NE2 90.3 173.5 REMARK 620 4 TYR A 168 OH 79.8 88.9 94.1 REMARK 620 5 HOH A 491 O 95.7 83.6 93.9 170.9 REMARK 620 6 HOH B 411 O 167.7 88.9 85.4 89.0 96.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 410 O REMARK 620 2 HIS B 1 N 171.0 REMARK 620 3 HIS B 1 ND1 89.7 93.2 REMARK 620 4 HIS B 84 NE2 88.6 89.2 174.6 REMARK 620 5 TYR B 168 OH 86.8 84.6 90.0 95.0 REMARK 620 6 HOH B 545 O 94.4 94.3 86.5 88.6 176.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7T5C RELATED DB: PDB REMARK 900 RELATED LPMO X-RAY STRUCTURE FOR PDB DEPOSITION REMARK 900 RELATED ID: 7T5D RELATED DB: PDB REMARK 900 RELATED LPMO NEUTRON STRUCTURE FOR PDB DEPOSITION DBREF 7T5E A 1 223 UNP Q8WZQ2 Q8WZQ2_NEUCS 16 238 DBREF 7T5E B 1 223 UNP Q8WZQ2 Q8WZQ2_NEUCS 16 238 SEQRES 1 A 223 HIS THR ILE PHE SER SER LEU GLU VAL ASN GLY VAL ASN SEQRES 2 A 223 GLN GLY LEU GLY GLU GLY VAL ARG VAL PRO THR TYR ASN SEQRES 3 A 223 GLY PRO ILE GLU ASP VAL THR SER ALA SER ILE ALA CYS SEQRES 4 A 223 ASN GLY SER PRO ASN THR VAL ALA SER THR SER LYS VAL SEQRES 5 A 223 ILE THR VAL GLN ALA GLY THR ASN VAL THR ALA ILE TRP SEQRES 6 A 223 ARG TYR MET LEU SER THR THR GLY ASP SER PRO ALA ASP SEQRES 7 A 223 VAL MET ASP SER SER HIS LYS GLY PRO THR ILE ALA TYR SEQRES 8 A 223 LEU LYS LYS VAL ASP ASN ALA ALA THR ALA SER GLY VAL SEQRES 9 A 223 GLY ASN GLY TRP PHE LYS ILE GLN GLN ASP GLY MET ASP SEQRES 10 A 223 SER SER GLY VAL TRP GLY THR GLU ARG VAL ILE ASN GLY SEQRES 11 A 223 LYS GLY ARG HIS SER ILE LYS ILE PRO GLU CYS ILE ALA SEQRES 12 A 223 PRO GLY GLN TYR LEU LEU ARG ALA GLU MET ILE ALA LEU SEQRES 13 A 223 HIS ALA ALA SER ASN TYR PRO GLY ALA GLN PHE TYR MET SEQRES 14 A 223 GLU CYS ALA GLN LEU ASN VAL VAL GLY GLY THR GLY ALA SEQRES 15 A 223 LYS THR PRO SER THR VAL SER PHE PRO GLY ALA TYR SER SEQRES 16 A 223 GLY SER ASP PRO GLY VAL LYS ILE SER ILE TYR TRP PRO SEQRES 17 A 223 PRO VAL THR SER TYR THR VAL PRO GLY PRO SER VAL PHE SEQRES 18 A 223 THR CYS SEQRES 1 B 223 HIS THR ILE PHE SER SER LEU GLU VAL ASN GLY VAL ASN SEQRES 2 B 223 GLN GLY LEU GLY GLU GLY VAL ARG VAL PRO THR TYR ASN SEQRES 3 B 223 GLY PRO ILE GLU ASP VAL THR SER ALA SER ILE ALA CYS SEQRES 4 B 223 ASN GLY SER PRO ASN THR VAL ALA SER THR SER LYS VAL SEQRES 5 B 223 ILE THR VAL GLN ALA GLY THR ASN VAL THR ALA ILE TRP SEQRES 6 B 223 ARG TYR MET LEU SER THR THR GLY ASP SER PRO ALA ASP SEQRES 7 B 223 VAL MET ASP SER SER HIS LYS GLY PRO THR ILE ALA TYR SEQRES 8 B 223 LEU LYS LYS VAL ASP ASN ALA ALA THR ALA SER GLY VAL SEQRES 9 B 223 GLY ASN GLY TRP PHE LYS ILE GLN GLN ASP GLY MET ASP SEQRES 10 B 223 SER SER GLY VAL TRP GLY THR GLU ARG VAL ILE ASN GLY SEQRES 11 B 223 LYS GLY ARG HIS SER ILE LYS ILE PRO GLU CYS ILE ALA SEQRES 12 B 223 PRO GLY GLN TYR LEU LEU ARG ALA GLU MET ILE ALA LEU SEQRES 13 B 223 HIS ALA ALA SER ASN TYR PRO GLY ALA GLN PHE TYR MET SEQRES 14 B 223 GLU CYS ALA GLN LEU ASN VAL VAL GLY GLY THR GLY ALA SEQRES 15 B 223 LYS THR PRO SER THR VAL SER PHE PRO GLY ALA TYR SER SEQRES 16 B 223 GLY SER ASP PRO GLY VAL LYS ILE SER ILE TYR TRP PRO SEQRES 17 B 223 PRO VAL THR SER TYR THR VAL PRO GLY PRO SER VAL PHE SEQRES 18 B 223 THR CYS HET NAG C 1 28 HET NAG C 2 27 HET MAN C 3 22 HET NAG D 1 29 HET NAG D 2 27 HET MAN D 3 22 HET CU A 301 1 HET CU B 301 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 5 CU 2(CU 2+) FORMUL 7 HOH *388(H2 O) HELIX 1 AA1 SER A 34 ALA A 38 5 5 HELIX 2 AA2 SER A 75 VAL A 79 5 5 HELIX 3 AA3 TRP A 122 ASN A 129 1 8 HELIX 4 AA4 SER B 34 ALA B 38 5 5 HELIX 5 AA5 SER B 75 VAL B 79 5 5 HELIX 6 AA6 TRP B 122 ASN B 129 1 8 SHEET 1 AA1 4 VAL A 12 ASN A 13 0 SHEET 2 AA1 4 ILE A 3 VAL A 9 -1 N VAL A 9 O VAL A 12 SHEET 3 AA1 4 ASN A 60 ARG A 66 -1 O THR A 62 N GLU A 8 SHEET 4 AA1 4 ARG A 133 LYS A 137 -1 O ILE A 136 N VAL A 61 SHEET 1 AA2 3 VAL A 20 ARG A 21 0 SHEET 2 AA2 3 GLN A 166 VAL A 177 -1 O CYS A 171 N ARG A 21 SHEET 3 AA2 3 ILE A 53 GLN A 56 1 N ILE A 53 O GLN A 173 SHEET 1 AA3 6 VAL A 20 ARG A 21 0 SHEET 2 AA3 6 GLN A 166 VAL A 177 -1 O CYS A 171 N ARG A 21 SHEET 3 AA3 6 GLY A 145 ALA A 155 -1 N GLY A 145 O VAL A 176 SHEET 4 AA3 6 THR A 88 LYS A 94 -1 N ILE A 89 O GLU A 152 SHEET 5 AA3 6 GLY A 105 ASP A 114 -1 O PHE A 109 N LEU A 92 SHEET 6 AA3 6 VAL A 188 PHE A 190 -1 O VAL A 188 N TRP A 108 SHEET 1 AA4 4 VAL B 12 ASN B 13 0 SHEET 2 AA4 4 ILE B 3 VAL B 9 -1 N VAL B 9 O VAL B 12 SHEET 3 AA4 4 ASN B 60 ARG B 66 -1 O ARG B 66 N ILE B 3 SHEET 4 AA4 4 ARG B 133 LYS B 137 -1 O ILE B 136 N VAL B 61 SHEET 1 AA5 6 ILE B 53 GLN B 56 0 SHEET 2 AA5 6 GLN B 166 VAL B 177 1 O GLN B 173 N ILE B 53 SHEET 3 AA5 6 GLY B 145 ALA B 155 -1 N GLY B 145 O VAL B 176 SHEET 4 AA5 6 THR B 88 LYS B 94 -1 N ILE B 89 O GLU B 152 SHEET 5 AA5 6 GLY B 105 ASP B 114 -1 O ILE B 111 N ALA B 90 SHEET 6 AA5 6 VAL B 188 PHE B 190 -1 O PHE B 190 N GLY B 105 SSBOND 1 CYS A 39 CYS A 171 1555 1555 2.02 SSBOND 2 CYS A 141 CYS A 223 1555 1555 1.99 SSBOND 3 CYS B 39 CYS B 171 1555 1555 2.03 SSBOND 4 CYS B 141 CYS B 223 1555 1555 1.99 LINK ND2 ASN A 60 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN B 60 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.41 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.47 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.44 LINK N HIS A 1 CU CU A 301 1555 1555 2.13 LINK ND1 HIS A 1 CU CU A 301 1555 1555 1.99 LINK NE2 HIS A 84 CU CU A 301 1555 1555 2.00 LINK OH TYR A 168 CU CU A 301 1555 1555 2.67 LINK CU CU A 301 O HOH A 491 1555 1555 2.34 LINK CU CU A 301 O HOH B 411 1555 1555 2.08 LINK O HOH A 410 CU CU B 301 1555 1555 2.03 LINK N HIS B 1 CU CU B 301 1555 1555 2.03 LINK ND1 HIS B 1 CU CU B 301 1555 1555 1.99 LINK NE2 HIS B 84 CU CU B 301 1555 1555 2.04 LINK OH TYR B 168 CU CU B 301 1555 1555 2.66 LINK CU CU B 301 O HOH B 545 1555 1555 2.43 CISPEP 1 SER A 42 PRO A 43 0 8.85 CISPEP 2 TYR A 162 PRO A 163 0 -0.18 CISPEP 3 PHE A 190 PRO A 191 0 -5.61 CISPEP 4 TRP A 207 PRO A 208 0 -9.58 CISPEP 5 SER B 42 PRO B 43 0 4.90 CISPEP 6 TYR B 162 PRO B 163 0 1.11 CISPEP 7 PHE B 190 PRO B 191 0 -3.72 CISPEP 8 TRP B 207 PRO B 208 0 -8.45 CRYST1 68.296 42.269 70.413 90.00 98.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014642 0.000000 0.002181 0.00000 SCALE2 0.000000 0.023658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014359 0.00000