HEADER IMMUNE SYSTEM/VIRAL PROTEIN 14-DEC-21 7T7B TITLE CRYSTAL STRUCTURE OF SARS-COV-2 SPIKE PROTEIN RECEPTOR-BINDING DOMAIN TITLE 2 IN COMPLEX WITH A CROSS-NEUTRALIZING ANTIBODY ADI-62113 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RECEPTOR BINDING DOMAIN, UNP RESIDUES 333-530; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ADI-62113 FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ADI-62113 FAB LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS CROSS-NEUTRALIZING ANTIBODY; YYDRXG; SARS-COV-2; ADI-62113; KEYWDS 2 SARBECOVIRUS; PATTERN SEARCH; IGHD3-22, IMMUNE SYSTEM, IMMUNE KEYWDS 3 SYSTEM-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.LIU,I.A.WILSON REVDAT 3 18-OCT-23 7T7B 1 REMARK REVDAT 2 10-AUG-22 7T7B 1 JRNL REVDAT 1 03-AUG-22 7T7B 0 JRNL AUTH H.LIU,C.I.KAKU,G.SONG,M.YUAN,R.ANDRABI,D.R.BURTON, JRNL AUTH 2 L.M.WALKER,I.A.WILSON JRNL TITL HUMAN ANTIBODIES TO SARS-COV-2 WITH A RECURRING YYDRXG MOTIF JRNL TITL 2 RETAIN BINDING AND NEUTRALIZATION TO VARIANTS OF CONCERN JRNL TITL 3 INCLUDING OMICRON. JRNL REF COMMUN BIOL V. 5 766 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 35906394 JRNL DOI 10.1038/S42003-022-03700-6 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 23894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4300 - 5.1800 0.99 3206 176 0.2148 0.2723 REMARK 3 2 5.1800 - 4.1100 0.99 3013 171 0.1657 0.2081 REMARK 3 3 4.1100 - 3.5900 1.00 3002 155 0.1952 0.2362 REMARK 3 4 3.5900 - 3.2600 0.99 2956 153 0.2354 0.2902 REMARK 3 5 3.2600 - 3.0300 0.98 2949 152 0.2569 0.2912 REMARK 3 6 3.0300 - 2.8500 0.97 2896 146 0.2663 0.2952 REMARK 3 7 2.8500 - 2.7100 0.89 2642 126 0.2979 0.3736 REMARK 3 8 2.7100 - 2.5900 0.70 2060 91 0.3656 0.3860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 26.1595 -10.0415 -5.2781 REMARK 3 T TENSOR REMARK 3 T11: 0.2257 T22: 0.1737 REMARK 3 T33: 0.2363 T12: -0.0210 REMARK 3 T13: 0.0509 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.9722 L22: 0.3674 REMARK 3 L33: 0.6253 L12: -0.1397 REMARK 3 L13: 0.5588 L23: -0.0652 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: 0.0922 S13: 0.0163 REMARK 3 S21: -0.0504 S22: -0.0157 S23: 0.0160 REMARK 3 S31: 0.0156 S32: 0.0462 S33: -0.0169 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7T7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25315 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.23700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 1.54700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M SODIUM ACETATE PH 4.6, 0.16 M REMARK 280 AMMONIUM SULFATE, 20% (W/V) POLYETHYLENE GLYCOL 4000, AND 20% (V/ REMARK 280 V) GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.49400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.51300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.51300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 161.24100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.51300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.51300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.74700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.51300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.51300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 161.24100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.51300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.51300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.74700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.49400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 -42.51300 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -42.51300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -53.74700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 333 REMARK 465 LYS A 528 REMARK 465 LYS A 529 REMARK 465 SER A 530 REMARK 465 GLY A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 SER L 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 440 CG OD1 ND2 REMARK 470 LYS A 444 CG CD CE NZ REMARK 470 VAL A 445 CG1 CG2 REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 LYS H 23 CD CE NZ REMARK 470 LYS H 62 CD CE NZ REMARK 470 LYS H 83 CD CE NZ REMARK 470 LYS H 201 CG CD CE NZ REMARK 470 LYS L 30 CD CE NZ REMARK 470 LYS L 190 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 352 53.40 -110.31 REMARK 500 ASP A 389 56.84 -113.34 REMARK 500 ASN A 422 -59.47 -131.37 REMARK 500 ASP A 428 31.04 -86.15 REMARK 500 ASP H 144 65.20 60.51 REMARK 500 LYS L 30 -132.38 59.72 REMARK 500 ALA L 51 -45.94 74.65 REMARK 500 TYR L 91 24.25 -144.93 REMARK 500 LEU L 94 -148.65 58.61 REMARK 500 ASN L 138 75.22 56.28 REMARK 500 LYS L 169 -66.78 -100.86 REMARK 500 LYS L 190 -63.86 -120.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 7T7B A 333 530 UNP P0DTC2 SPIKE_SARS2 333 530 DBREF 7T7B H 1 216 PDB 7T7B 7T7B 1 216 DBREF 7T7B L 1 215 PDB 7T7B 7T7B 1 215 SEQADV 7T7B GLY A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 7T7B HIS A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 7T7B HIS A 533 UNP P0DTC2 EXPRESSION TAG SEQADV 7T7B HIS A 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7T7B HIS A 535 UNP P0DTC2 EXPRESSION TAG SEQADV 7T7B HIS A 536 UNP P0DTC2 EXPRESSION TAG SEQADV 7T7B HIS A 537 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 205 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 A 205 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 A 205 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 A 205 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 A 205 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 A 205 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 A 205 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 A 205 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 A 205 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 A 205 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 A 205 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 A 205 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 A 205 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 A 205 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 A 205 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 16 A 205 LYS LYS SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 H 232 GLN VAL GLN LEU GLN GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 232 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 232 TYR THR PHE SER VAL PHE PRO ILE HIS TRP VAL ARG GLN SEQRES 4 H 232 ALA PRO GLY GLN ARG LEU GLU TRP MET GLY TRP HIS ASN SEQRES 5 H 232 ALA GLY ASP GLY ASP THR LYS TYR SER GLN LYS PHE GLN SEQRES 6 H 232 GLY ARG VAL THR ILE ILE SER ASP THR SER ALA SER THR SEQRES 7 H 232 ALA TYR MET GLU LEU SER SER LEU LYS SER GLU ASP THR SEQRES 8 H 232 ALA VAL TYR TYR CYS ALA ARG ALA ALA ARG PRO TYR TYR SEQRES 9 H 232 ASP ARG ARG GLY TYR PHE PHE ARG ALA ASP TYR PHE GLN SEQRES 10 H 232 HIS TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SEQRES 11 H 232 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 12 H 232 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 13 H 232 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 14 H 232 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 15 H 232 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 16 H 232 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 17 H 232 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 18 H 232 LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 1 L 214 ASP ILE GLN VAL THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER SEQRES 3 L 214 GLN ASP ILE LYS ASN SER LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE SER ASP ALA SER SEQRES 5 L 214 ASN LEU GLU THR GLY VAL PRO SER ARG PHE SER GLY ASN SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 ASP ASN LEU ILE THR PHE GLY PRO GLY THR LYS VAL GLU SEQRES 9 L 214 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 L 214 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 L 214 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 L 214 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 L 214 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 L 214 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 L 214 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 L 214 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 L 214 ASN ARG GLY GLU CYS SER HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 FUC C6 H12 O5 FORMUL 5 HOH *72(H2 O) HELIX 1 AA1 PHE A 338 ASN A 343 1 6 HELIX 2 AA2 TYR A 365 ASN A 370 1 6 HELIX 3 AA3 PRO A 384 ASN A 388 5 5 HELIX 4 AA4 ASP A 405 ILE A 410 5 6 HELIX 5 AA5 GLY A 416 ASN A 422 1 7 HELIX 6 AA6 SER A 438 SER A 443 1 6 HELIX 7 AA7 GLY A 502 TYR A 505 5 4 HELIX 8 AA8 THR H 28 PHE H 32 5 5 HELIX 9 AA9 LYS H 83 THR H 87 5 5 HELIX 10 AB1 SER H 156 ALA H 158 5 3 HELIX 11 AB2 SER H 186 GLN H 192 1 7 HELIX 12 AB3 LYS H 201 ASN H 204 5 4 HELIX 13 AB4 GLN L 79 ILE L 83 5 5 HELIX 14 AB5 SER L 121 SER L 127 1 7 HELIX 15 AB6 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 ASN A 394 ARG A 403 -1 O SER A 399 N ASN A 354 SHEET 3 AA1 5 PRO A 507 GLU A 516 -1 O SER A 514 N TYR A 396 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 5 THR A 376 TYR A 380 -1 N LYS A 378 O VAL A 433 SHEET 1 AA2 3 CYS A 361 VAL A 362 0 SHEET 2 AA2 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AA2 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA5 4 GLN H 3 GLN H 6 0 SHEET 2 AA5 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA5 4 THR H 77 LEU H 82 -1 O MET H 80 N LEU H 20 SHEET 4 AA5 4 VAL H 67 ASP H 72 -1 N ILE H 70 O TYR H 79 SHEET 1 AA6 6 GLU H 10 LYS H 12 0 SHEET 2 AA6 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA6 6 ALA H 88 ALA H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA6 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA6 6 LEU H 45 HIS H 51 -1 O GLY H 49 N TRP H 36 SHEET 6 AA6 6 THR H 57 TYR H 59 -1 O LYS H 58 N TRP H 50 SHEET 1 AA7 4 GLU H 10 LYS H 12 0 SHEET 2 AA7 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA7 4 ALA H 88 ALA H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA7 4 PHE H 100L TRP H 103 -1 O HIS H 102 N ARG H 94 SHEET 1 AA8 2 TYR H 99 TYR H 100 0 SHEET 2 AA8 2 PHE H 100F PHE H 100G-1 O PHE H 100G N TYR H 99 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA9 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA9 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AB1 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AB1 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB2 3 THR H 151 TRP H 154 0 SHEET 2 AB2 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB2 3 THR H 205 ARG H 210 -1 O THR H 205 N HIS H 200 SHEET 1 AB3 4 VAL L 4 SER L 7 0 SHEET 2 AB3 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AB3 4 ASP L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 AB3 4 PHE L 62 SER L 67 -1 N ASN L 65 O THR L 72 SHEET 1 AB4 6 SER L 10 ALA L 13 0 SHEET 2 AB4 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AB4 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AB4 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AB4 6 LYS L 45 SER L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 AB4 6 ASN L 53 LEU L 54 -1 O ASN L 53 N SER L 49 SHEET 1 AB5 4 SER L 10 ALA L 13 0 SHEET 2 AB5 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AB5 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AB5 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB6 4 SER L 114 PHE L 118 0 SHEET 2 AB6 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB6 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB6 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB7 4 ALA L 153 LEU L 154 0 SHEET 2 AB7 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB7 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB7 4 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.03 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.03 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.03 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 6 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 8 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN A 343 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.44 CISPEP 1 PHE H 146 PRO H 147 0 -3.07 CISPEP 2 GLU H 148 PRO H 149 0 -0.99 CISPEP 3 SER L 7 PRO L 8 0 -0.07 CISPEP 4 TYR L 140 PRO L 141 0 2.38 CRYST1 85.026 85.026 214.988 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011761 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004651 0.00000