HEADER DNA BINDING PROTEIN/DNA 16-DEC-21 7T8K TITLE BRXR FROM ACINETOBACTER BREX TYPE I PHAGE RESTRICTION SYSTEM BOUND TO TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRXR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HOMODIMER; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA; COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP. NEB 394; SOURCE 3 ORGANISM_TAXID: 2743575; SOURCE 4 GENE: HUK62_18310; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ACINETOBACTER SP. NEB 394; SOURCE 10 ORGANISM_TAXID: 2743575; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ACINETOBACTER SP. NEB 394; SOURCE 14 ORGANISM_TAXID: 2743575 KEYWDS PHAGE RESTRICTION, BREX, DNA BINDING, REGULATORY, ACINETOBACTER, KEYWDS 2 BACTERIOPHAGE EXCLUSION, DNA BINDING PROTEIN, DNA BINDING PROTEIN- KEYWDS 3 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.DOYLE,B.KAISER,B.STODDARD REVDAT 4 03-APR-24 7T8K 1 REMARK REVDAT 3 28-FEB-24 7T8K 1 REMARK REVDAT 2 01-JUN-22 7T8K 1 JRNL REVDAT 1 18-MAY-22 7T8K 0 JRNL AUTH Y.A.LUYTEN,D.E.HAUSMAN,J.C.YOUNG,L.A.DOYLE,K.M.HIGASHI, JRNL AUTH 2 N.C.UBILLA-RODRIGUEZ,A.R.LAMBERT,C.S.ARROYO,K.J.FORSBERG, JRNL AUTH 3 R.D.MORGAN,B.L.STODDARD,B.K.KAISER JRNL TITL IDENTIFICATION AND CHARACTERIZATION OF THE WYL BRXR PROTEIN JRNL TITL 2 AND ITS GENE AS SEPARABLE REGULATORY ELEMENTS OF A BREX JRNL TITL 3 PHAGE RESTRICTION SYSTEM. JRNL REF NUCLEIC ACIDS RES. V. 50 5171 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35511079 JRNL DOI 10.1093/NAR/GKAC311 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3855 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 38351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.2200 - 5.5400 0.98 2771 150 0.1495 0.1656 REMARK 3 2 5.5400 - 4.4000 0.92 2538 138 0.1674 0.1862 REMARK 3 3 4.4000 - 3.8400 0.90 2478 135 0.1718 0.2156 REMARK 3 4 3.8400 - 3.4900 0.93 2519 138 0.2001 0.2558 REMARK 3 5 3.4900 - 3.2400 0.95 2608 141 0.2301 0.3086 REMARK 3 6 3.2400 - 3.0500 0.98 2677 147 0.2335 0.2746 REMARK 3 7 3.0500 - 2.9000 0.99 2686 147 0.2422 0.2718 REMARK 3 8 2.9000 - 2.7700 0.99 2701 146 0.2424 0.3383 REMARK 3 9 2.7700 - 2.6700 0.99 2675 146 0.2365 0.2703 REMARK 3 10 2.6700 - 2.5700 0.99 2681 146 0.2303 0.3229 REMARK 3 11 2.5700 - 2.4900 0.98 2666 146 0.2408 0.2857 REMARK 3 12 2.4900 - 2.4200 0.98 2665 145 0.2313 0.2692 REMARK 3 13 2.4200 - 2.3600 0.96 2584 142 0.2378 0.2866 REMARK 3 14 2.3600 - 2.3000 0.79 2118 117 0.2278 0.3289 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 3 THROUGH 4 OR (RESID REMARK 3 5 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 6 THROUGH REMARK 3 79 OR RESID 81 THROUGH 91 OR (RESID 92 REMARK 3 THROUGH 93 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 95 REMARK 3 THROUGH 172 OR (RESID 173 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD OR NAME CE )) OR REMARK 3 (RESID 174 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 175 OR (RESID 176 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 177 THROUGH 192 OR (RESID 193 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 194 THROUGH 215 REMARK 3 OR (RESID 216 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 217 THROUGH 257 OR (RESID 258 THROUGH 259 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 260 THROUGH 272 REMARK 3 OR (RESID 273 THROUGH 274 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 275 THROUGH 279 OR RESID 301 REMARK 3 THROUGH 501)) REMARK 3 SELECTION : (CHAIN B AND (RESID 3 THROUGH 57 OR REMARK 3 (RESID 58 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 59 REMARK 3 THROUGH 61 OR (RESID 62 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 63 OR (RESID 64 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG )) OR RESID 65 THROUGH 68 OR REMARK 3 (RESID 69 THROUGH 71 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 72 OR (RESID 73 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 74 THROUGH 79 OR RESID 81 THROUGH REMARK 3 93 OR (RESID 95 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 96 THROUGH 113 OR (RESID 114 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 115 THROUGH 118 OR (RESID 119 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 120 THROUGH 141 REMARK 3 OR (RESID 142 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 143 THROUGH 198 OR (RESID 199 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG )) OR RESID 200 THROUGH 241 OR REMARK 3 (RESID 242 THROUGH 243 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 244 THROUGH 261 OR (RESID 262 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 263 THROUGH 264 REMARK 3 OR (RESID 265 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 266 THROUGH 279 OR RESID 301 THROUGH 501)) REMARK 3 ATOM PAIRS NUMBER : 1669 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7T8K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1000261191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: APO BRXR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M CITRIC ACID, 20% W/V PEG 3350, REMARK 280 0.06 M BIS-TRIS PROPANE, PH 6.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.79300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.73850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.79300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.73850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 280 REMARK 465 SER B 281 REMARK 465 TYR B 282 REMARK 465 LEU B 283 REMARK 465 PHE B 284 REMARK 465 ASP B 285 REMARK 465 GLN B 286 REMARK 465 ALA B 287 REMARK 465 SER B 288 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CD CE NZ REMARK 470 LYS A 46 CE NZ REMARK 470 ILE A 58 CG1 CG2 CD1 REMARK 470 SER A 62 OG REMARK 470 LYS A 64 CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 SER A 71 OG REMARK 470 GLN A 73 CG CD OE1 NE2 REMARK 470 SER A 95 OG REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 GLN A 142 CG CD OE1 NE2 REMARK 470 ARG A 185 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 193 CD OE1 OE2 REMARK 470 GLN A 199 CD OE1 NE2 REMARK 470 LYS A 216 CD CE NZ REMARK 470 LYS A 227 CD CE NZ REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 LEU A 265 CG CD1 CD2 REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 LEU A 279 CG CD1 CD2 REMARK 470 SER A 280 OG REMARK 470 SER A 281 OG REMARK 470 LEU A 283 CG CD1 CD2 REMARK 470 ASP A 285 CG OD1 OD2 REMARK 470 GLN A 286 CG CD OE1 NE2 REMARK 470 SER A 288 OG REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 LYS B 46 CE NZ REMARK 470 VAL B 92 CG1 CG2 REMARK 470 SER B 93 OG REMARK 470 GLN B 142 CD OE1 NE2 REMARK 470 LYS B 173 NZ REMARK 470 GLN B 174 CD OE1 NE2 REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 ARG B 185 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 LYS B 227 CD CE NZ REMARK 470 LEU B 258 CG CD1 CD2 REMARK 470 LEU B 265 CD1 CD2 REMARK 470 ARG B 273 CG CD NE CZ NH1 NH2 REMARK 470 SER B 274 OG REMARK 470 GLU B 277 CG CD OE1 OE2 REMARK 470 LYS B 278 CG CD CE NZ REMARK 470 LEU B 279 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DA D 10 O HOH D 101 2.07 REMARK 500 NH2 ARG A 149 O SER A 288 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 171 CA - CB - CG ANGL. DEV. = -15.5 DEGREES REMARK 500 DC C 20 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC D 4 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DC D 4 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 79 46.69 -81.58 REMARK 500 ALA A 79 45.79 -81.58 REMARK 500 PHE A 161 -35.24 -133.34 REMARK 500 ARG A 185 -159.29 52.47 REMARK 500 ASP A 233 52.61 -145.73 REMARK 500 ALA B 79 40.39 -81.55 REMARK 500 PHE B 161 -33.86 -132.87 REMARK 500 ARG B 185 0.17 -62.42 REMARK 500 THR B 186 57.22 -114.61 REMARK 500 ASP B 233 49.57 -142.89 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7T8K A 1 288 UNP A0A7H8SL41_9GAMM DBREF2 7T8K A A0A7H8SL41 1 288 DBREF1 7T8K B 1 288 UNP A0A7H8SL41_9GAMM DBREF2 7T8K B A0A7H8SL41 1 288 DBREF 7T8K C 1 25 PDB 7T8K 7T8K 1 25 DBREF 7T8K D 1 25 PDB 7T8K 7T8K 1 25 SEQADV 7T8K GLY A -2 UNP A0A7H8SL4 EXPRESSION TAG SEQADV 7T8K SER A -1 UNP A0A7H8SL4 EXPRESSION TAG SEQADV 7T8K HIS A 0 UNP A0A7H8SL4 EXPRESSION TAG SEQADV 7T8K GLY B -2 UNP A0A7H8SL4 EXPRESSION TAG SEQADV 7T8K SER B -1 UNP A0A7H8SL4 EXPRESSION TAG SEQADV 7T8K HIS B 0 UNP A0A7H8SL4 EXPRESSION TAG SEQRES 1 A 291 GLY SER HIS MET THR ALA ASP LYS HIS GLU VAL LEU LEU SEQRES 2 A 291 ARG MET ARG ALA ILE GLU LEU LEU ALA TYR TRP GLU GLY SEQRES 3 A 291 ARG LEU VAL THR THR ARG LEU MET ASN TRP PHE GLY LEU SEQRES 4 A 291 SER ARG GLN GLN ALA SER ALA ASP ILE LYS ARG TYR ASN SEQRES 5 A 291 THR LEU TYR ASN PRO ASP ALA LEU ILE HIS ASP PRO SER SEQRES 6 A 291 VAL LYS GLY TYR VAL PRO LYS ALA SER PHE GLN PRO VAL SEQRES 7 A 291 LEU THR THR ALA HIS ILE ASN GLU TYR LEU ASN MET LEU SEQRES 8 A 291 SER GLY LEU VAL SER GLU SER HIS ALA LEU ILE ALA MET SEQRES 9 A 291 PRO GLU PRO ASN LEU ALA ALA VAL GLN LEU PRO ASP ARG SEQRES 10 A 291 SER VAL ARG PRO GLU VAL ILE ARG GLU VAL LEU ARG ALA SEQRES 11 A 291 CYS ARG ASN GLN SER THR LEU LYS MET ILE TYR ALA SER SEQRES 12 A 291 MET GLN ASN PRO GLN TRP HIS GLU ARG ILE ILE SER PRO SEQRES 13 A 291 HIS THR LEU VAL TYR THR GLY PHE ARG TRP HIS VAL ARG SEQRES 14 A 291 ALA TYR CYS HIS GLN SER LYS GLN PHE LYS ASP PHE LEU SEQRES 15 A 291 LEU SER ARG ILE ASP ARG THR PRO VAL VAL VAL ALA ILE SEQRES 16 A 291 GLU SER VAL ASP PRO ALA GLN ASP GLN GLN TRP HIS GLU SEQRES 17 A 291 GLU ILE VAL LEU THR LEU ILE PRO ASN PRO LYS LEU ASN SEQRES 18 A 291 SER SER GLN GLN ALA LEU VAL GLU LYS ASP PHE GLY MET SEQRES 19 A 291 PRO ASP GLY ARG LEU GLN ILE PRO VAL LYS LYS ALA LEU SEQRES 20 A 291 ALA HIS TYR THR LEU GLN ARG TYR GLN THR ALA ILE THR SEQRES 21 A 291 LEU ALA GLU ALA GLU ASP ALA LEU LYS TYR PRO LEU VAL SEQRES 22 A 291 LEU GLN ARG SER ASP ILE GLU LYS LEU SER SER TYR LEU SEQRES 23 A 291 PHE ASP GLN ALA SER SEQRES 1 B 291 GLY SER HIS MET THR ALA ASP LYS HIS GLU VAL LEU LEU SEQRES 2 B 291 ARG MET ARG ALA ILE GLU LEU LEU ALA TYR TRP GLU GLY SEQRES 3 B 291 ARG LEU VAL THR THR ARG LEU MET ASN TRP PHE GLY LEU SEQRES 4 B 291 SER ARG GLN GLN ALA SER ALA ASP ILE LYS ARG TYR ASN SEQRES 5 B 291 THR LEU TYR ASN PRO ASP ALA LEU ILE HIS ASP PRO SER SEQRES 6 B 291 VAL LYS GLY TYR VAL PRO LYS ALA SER PHE GLN PRO VAL SEQRES 7 B 291 LEU THR THR ALA HIS ILE ASN GLU TYR LEU ASN MET LEU SEQRES 8 B 291 SER GLY LEU VAL SER GLU SER HIS ALA LEU ILE ALA MET SEQRES 9 B 291 PRO GLU PRO ASN LEU ALA ALA VAL GLN LEU PRO ASP ARG SEQRES 10 B 291 SER VAL ARG PRO GLU VAL ILE ARG GLU VAL LEU ARG ALA SEQRES 11 B 291 CYS ARG ASN GLN SER THR LEU LYS MET ILE TYR ALA SER SEQRES 12 B 291 MET GLN ASN PRO GLN TRP HIS GLU ARG ILE ILE SER PRO SEQRES 13 B 291 HIS THR LEU VAL TYR THR GLY PHE ARG TRP HIS VAL ARG SEQRES 14 B 291 ALA TYR CYS HIS GLN SER LYS GLN PHE LYS ASP PHE LEU SEQRES 15 B 291 LEU SER ARG ILE ASP ARG THR PRO VAL VAL VAL ALA ILE SEQRES 16 B 291 GLU SER VAL ASP PRO ALA GLN ASP GLN GLN TRP HIS GLU SEQRES 17 B 291 GLU ILE VAL LEU THR LEU ILE PRO ASN PRO LYS LEU ASN SEQRES 18 B 291 SER SER GLN GLN ALA LEU VAL GLU LYS ASP PHE GLY MET SEQRES 19 B 291 PRO ASP GLY ARG LEU GLN ILE PRO VAL LYS LYS ALA LEU SEQRES 20 B 291 ALA HIS TYR THR LEU GLN ARG TYR GLN THR ALA ILE THR SEQRES 21 B 291 LEU ALA GLU ALA GLU ASP ALA LEU LYS TYR PRO LEU VAL SEQRES 22 B 291 LEU GLN ARG SER ASP ILE GLU LYS LEU SER SER TYR LEU SEQRES 23 B 291 PHE ASP GLN ALA SER SEQRES 1 C 25 DA DT DA DC DA DG DT DA DA DA DT DT DA SEQRES 2 C 25 DT DT DT DT DT DA DC DG DG DT DA DT SEQRES 1 D 25 DA DT DA DC DC DG DT DA DA DA DA DA DT SEQRES 2 D 25 DA DA DT DT DT DA DC DT DG DT DA DT HET EDO A 301 4 HET EDO A 302 4 HET CL A 303 1 HET CL A 304 1 HET EDO B 501 10 HET EDO B 502 4 HET EDO B 503 4 HET EDO B 504 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 6(C2 H6 O2) FORMUL 7 CL 2(CL 1-) FORMUL 13 HOH *117(H2 O) HELIX 1 AA1 LYS A 5 GLY A 23 1 19 HELIX 2 AA2 VAL A 26 GLY A 35 1 10 HELIX 3 AA3 SER A 37 TYR A 52 1 16 HELIX 4 AA4 HIS A 80 VAL A 92 1 13 HELIX 5 AA5 ARG A 117 GLN A 131 1 15 HELIX 6 AA6 SER A 181 ILE A 183 5 3 HELIX 7 AA7 ASP A 196 GLN A 199 5 4 HELIX 8 AA8 ASP A 200 GLU A 205 1 6 HELIX 9 AA9 ASN A 218 GLY A 230 1 13 HELIX 10 AB1 LEU A 244 GLN A 253 1 10 HELIX 11 AB2 THR A 257 GLU A 262 1 6 HELIX 12 AB3 GLN A 272 GLU A 277 1 6 HELIX 13 AB4 LYS B 5 GLY B 23 1 19 HELIX 14 AB5 VAL B 26 GLY B 35 1 10 HELIX 15 AB6 SER B 37 TYR B 52 1 16 HELIX 16 AB7 HIS B 80 VAL B 92 1 13 HELIX 17 AB8 ARG B 117 GLN B 131 1 15 HELIX 18 AB9 SER B 181 ILE B 183 5 3 HELIX 19 AC1 ASP B 196 GLN B 199 5 4 HELIX 20 AC2 ASP B 200 GLU B 205 1 6 HELIX 21 AC3 ASN B 218 GLY B 230 1 13 HELIX 22 AC4 LEU B 244 GLN B 253 1 10 HELIX 23 AC5 ALA B 259 ASP B 263 5 5 HELIX 24 AC6 GLN B 272 GLU B 277 1 6 SHEET 1 AA1 2 LEU A 57 ASP A 60 0 SHEET 2 AA1 2 GLY A 65 PRO A 68 -1 O VAL A 67 N ILE A 58 SHEET 1 AA2 5 ILE A 99 ALA A 100 0 SHEET 2 AA2 5 LEU A 106 VAL A 109 -1 O ALA A 108 N ALA A 100 SHEET 3 AA2 5 HIS B 147 TYR B 158 1 O TYR B 158 N VAL A 109 SHEET 4 AA2 5 TRP B 163 CYS B 169 -1 O ARG B 166 N THR B 155 SHEET 5 AA2 5 GLN B 174 LEU B 179 -1 O GLN B 174 N CYS B 169 SHEET 1 AA3 5 ILE A 99 ALA A 100 0 SHEET 2 AA3 5 LEU A 106 VAL A 109 -1 O ALA A 108 N ALA A 100 SHEET 3 AA3 5 HIS B 147 TYR B 158 1 O TYR B 158 N VAL A 109 SHEET 4 AA3 5 LEU B 134 TYR B 138 -1 N TYR B 138 O HIS B 147 SHEET 5 AA3 5 VAL B 188 VAL B 189 -1 O VAL B 188 N LYS B 135 SHEET 1 AA4 5 GLN A 174 LEU A 179 0 SHEET 2 AA4 5 TRP A 163 CYS A 169 -1 N CYS A 169 O GLN A 174 SHEET 3 AA4 5 HIS A 147 TYR A 158 -1 N VAL A 157 O HIS A 164 SHEET 4 AA4 5 THR A 133 TYR A 138 -1 N LEU A 134 O ILE A 151 SHEET 5 AA4 5 ASP A 184 VAL A 190 -1 O VAL A 188 N LYS A 135 SHEET 1 AA5 5 GLN A 174 LEU A 179 0 SHEET 2 AA5 5 TRP A 163 CYS A 169 -1 N CYS A 169 O GLN A 174 SHEET 3 AA5 5 HIS A 147 TYR A 158 -1 N VAL A 157 O HIS A 164 SHEET 4 AA5 5 LEU B 106 VAL B 109 1 O VAL B 109 N TYR A 158 SHEET 5 AA5 5 ILE B 99 GLU B 103 -1 N ALA B 100 O ALA B 108 SHEET 1 AA6 3 LEU A 236 LYS A 241 0 SHEET 2 AA6 3 GLU A 206 PRO A 213 -1 N LEU A 209 O ILE A 238 SHEET 3 AA6 3 LEU A 269 LEU A 271 -1 O VAL A 270 N ILE A 212 SHEET 1 AA7 2 LEU B 57 ASP B 60 0 SHEET 2 AA7 2 GLY B 65 PRO B 68 -1 O GLY B 65 N ASP B 60 SHEET 1 AA8 3 LEU B 236 LYS B 241 0 SHEET 2 AA8 3 GLU B 206 PRO B 213 -1 N LEU B 209 O ILE B 238 SHEET 3 AA8 3 LEU B 269 LEU B 271 -1 O VAL B 270 N ILE B 212 CRYST1 151.586 71.477 87.413 90.00 105.13 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006597 0.000000 0.001784 0.00000 SCALE2 0.000000 0.013991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011851 0.00000