HEADER OXIDOREDUCTASE 18-DEC-21 7T9C TITLE CRYSTAL STRUCTURE OF DEHALOPEROXIDASE B IN COMPLEX WITH THYMOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHALOPEROXIDASE B; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMPHITRITE ORNATA; SOURCE 3 ORGANISM_TAXID: 129555; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEHALOPEROXIDASE B, HEME PEROXIDASE, PEROXIGENASE, OXYGEN BINDING, KEYWDS 2 HEME COFACTOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.S.DE SERRANO,R.A.GHILADI,T.MALEWSCHIK,D.YUN REVDAT 2 25-OCT-23 7T9C 1 REMARK REVDAT 1 25-JAN-23 7T9C 0 JRNL AUTH T.MALEWSCHIK,V.S.DE SERRANO,D.YUN,R.A.GHILADI JRNL TITL THE MULTIFUNCTIONAL GLOBIN DEHALOPEROXIDASE AS A BIOCATALYST JRNL TITL 2 IN THE OXIDATION OF MONOTERPENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 27496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.622 REMARK 3 FREE R VALUE TEST SET COUNT : 1271 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1983 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2131 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 160 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.55300 REMARK 3 B22 (A**2) : -0.49300 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.161 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2758 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2498 ; 0.002 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3795 ; 2.011 ; 1.696 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5788 ; 1.568 ; 1.639 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 5.660 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;36.127 ;23.289 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 471 ;17.139 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.291 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 332 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3444 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 704 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 782 ; 0.255 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 78 ; 0.236 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1309 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 118 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 1.649 ; 2.114 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1296 ; 1.648 ; 2.117 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1670 ; 2.594 ; 3.164 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1671 ; 2.595 ; 3.167 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1463 ; 2.377 ; 2.496 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1456 ; 2.371 ; 2.493 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2104 ; 3.596 ; 3.663 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2093 ; 3.588 ; 3.656 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7044 -2.2118 21.1175 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.0190 REMARK 3 T33: 0.0259 T12: 0.0140 REMARK 3 T13: -0.0028 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.2056 L22: 1.4685 REMARK 3 L33: 0.3862 L12: 0.2366 REMARK 3 L13: 0.2107 L23: -0.1995 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: 0.0042 S13: -0.0010 REMARK 3 S21: -0.1089 S22: 0.0084 S23: -0.0486 REMARK 3 S31: 0.0298 S32: 0.0109 S33: 0.0050 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): -21.0347 -4.4956 19.2068 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: 0.0414 REMARK 3 T33: 0.0183 T12: 0.0057 REMARK 3 T13: 0.0014 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.2780 L22: 1.1934 REMARK 3 L33: 1.2698 L12: -0.4534 REMARK 3 L13: 0.3452 L23: -0.9534 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: 0.0130 S13: -0.0242 REMARK 3 S21: 0.1492 S22: 0.0980 S23: 0.0054 REMARK 3 S31: -0.1352 S32: -0.0963 S33: -0.0293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7T9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000261871. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 29.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IXF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPEG 2000, AMMONIUM SULFATE, NA REMARK 280 CACODYLATE, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.22550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.97550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.39600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.97550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.22550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.39600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 CD NE CZ NH1 NH2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 87 CD CE NZ REMARK 470 LYS A 137 CD CE NZ REMARK 470 ARG B 33 NE CZ NH1 NH2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 LYS B 137 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 55 CB - CA - C ANGL. DEV. = 15.3 DEGREES REMARK 500 HIS B 55 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 52.11 -142.11 REMARK 500 LYS A 36 -78.35 -62.03 REMARK 500 ASN A 37 -12.84 -28.00 REMARK 500 ASN A 37 23.35 -72.94 REMARK 500 SER A 114 47.23 -87.35 REMARK 500 SER A 114 48.21 -89.49 REMARK 500 ASN B 34 -18.96 -42.79 REMARK 500 SER B 114 44.48 -81.79 REMARK 500 SER B 114 44.43 -81.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 89 NE2 REMARK 620 2 HEM A 201 NA 89.5 REMARK 620 3 HEM A 201 NB 90.2 89.8 REMARK 620 4 HEM A 201 NC 96.5 173.1 86.7 REMARK 620 5 HEM A 201 ND 97.9 90.8 171.8 91.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 89 NE2 REMARK 620 2 HEM B 201 NA 87.0 REMARK 620 3 HEM B 201 NB 89.2 90.8 REMARK 620 4 HEM B 201 NC 99.2 173.3 86.9 REMARK 620 5 HEM B 201 ND 96.5 88.7 174.2 92.9 REMARK 620 6 HOH B 304 O 163.1 109.3 94.7 64.7 80.0 REMARK 620 N 1 2 3 4 5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 LIGAND IPB OCCUPIES DENSITY THAT IS CLOSE TO THE POSITION OF H55 IN REMARK 999 ITS ALTERNATE CONFORMATION. THE OCCUPANCIES OF THE ALTERNATE REMARK 999 CONFORMATIONS REFLECT THE FACT. IN THE FRACTION WHERE THE LIGAND IS REMARK 999 BOUND, REFLECTED BY THE OCCUPANCY OF THE LIGAND, H55 IS IN THE REMARK 999 CONFORMATION FACING OUTSIDE OF THE DISTAL SIDE OF THE HEME POCKET, REMARK 999 WITH THE SAME OCCUPANCY AS THE BOUND LIGAND. WHEN THE LIGAND IS NOT REMARK 999 BOUND, H55 CAN OCCUPY THE INSIDE CONFORMATION, ALSO REFLECTED BY REMARK 999 ITS OCCUPANCY. DBREF 7T9C A 1 137 UNP Q9NAV7 Q9NAV7_9ANNE 2 138 DBREF 7T9C B 1 137 UNP Q9NAV7 Q9NAV7_9ANNE 2 138 SEQRES 1 A 137 GLY PHE LYS GLN ASP ILE ALA THR LEU ARG GLY ASP LEU SEQRES 2 A 137 ARG THR TYR ALA GLN ASP ILE PHE LEU ALA PHE LEU ASN SEQRES 3 A 137 LYS TYR PRO ASP GLU LYS ARG ASN PHE LYS ASN TYR VAL SEQRES 4 A 137 GLY LYS SER ASP GLN GLU LEU LYS SER MET ALA LYS PHE SEQRES 5 A 137 GLY ASP HIS THR GLU LYS VAL PHE ASN LEU MET MET GLU SEQRES 6 A 137 VAL ALA ASP ARG ALA THR ASP CYS VAL PRO LEU ALA SER SEQRES 7 A 137 ASP ALA SER THR LEU VAL GLN MET LYS GLN HIS SER GLY SEQRES 8 A 137 LEU THR THR GLY ASN PHE GLU LYS LEU PHE VAL ALA LEU SEQRES 9 A 137 VAL GLU TYR MET ARG ALA SER GLY GLN SER PHE ASP SER SEQRES 10 A 137 GLN SER TRP ASP ARG PHE GLY LYS ASN LEU VAL SER ALA SEQRES 11 A 137 LEU SER SER ALA GLY MET LYS SEQRES 1 B 137 GLY PHE LYS GLN ASP ILE ALA THR LEU ARG GLY ASP LEU SEQRES 2 B 137 ARG THR TYR ALA GLN ASP ILE PHE LEU ALA PHE LEU ASN SEQRES 3 B 137 LYS TYR PRO ASP GLU LYS ARG ASN PHE LYS ASN TYR VAL SEQRES 4 B 137 GLY LYS SER ASP GLN GLU LEU LYS SER MET ALA LYS PHE SEQRES 5 B 137 GLY ASP HIS THR GLU LYS VAL PHE ASN LEU MET MET GLU SEQRES 6 B 137 VAL ALA ASP ARG ALA THR ASP CYS VAL PRO LEU ALA SER SEQRES 7 B 137 ASP ALA SER THR LEU VAL GLN MET LYS GLN HIS SER GLY SEQRES 8 B 137 LEU THR THR GLY ASN PHE GLU LYS LEU PHE VAL ALA LEU SEQRES 9 B 137 VAL GLU TYR MET ARG ALA SER GLY GLN SER PHE ASP SER SEQRES 10 B 137 GLN SER TRP ASP ARG PHE GLY LYS ASN LEU VAL SER ALA SEQRES 11 B 137 LEU SER SER ALA GLY MET LYS HET HEM A 201 43 HET GOL A 202 6 HET GOL A 203 6 HET GOL A 204 6 HET GOL A 205 6 HET GOL A 206 6 HET IPB A 207 11 HET SO4 A 208 5 HET SO4 A 209 5 HET HEM B 201 43 HET IPB B 202 11 HET GOL B 203 6 HET GOL B 204 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETNAM IPB 5-METHYL-2-(1-METHYLETHYL)PHENOL HETNAM SO4 SULFATE ION HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 GOL 7(C3 H8 O3) FORMUL 9 IPB 2(C10 H14 O) FORMUL 10 SO4 2(O4 S 2-) FORMUL 16 HOH *107(H2 O) HELIX 1 AA1 GLY A 1 GLY A 11 1 11 HELIX 2 AA2 ASP A 12 TYR A 28 1 17 HELIX 3 AA3 PRO A 29 VAL A 39 5 11 HELIX 4 AA4 SER A 42 MET A 49 1 8 HELIX 5 AA5 MET A 49 ALA A 70 1 22 HELIX 6 AA6 LEU A 76 MET A 86 1 11 HELIX 7 AA7 LYS A 87 SER A 90 5 4 HELIX 8 AA8 THR A 93 SER A 111 1 19 HELIX 9 AA9 ASP A 116 ALA A 134 1 19 HELIX 10 AB1 PHE B 2 ASP B 12 1 11 HELIX 11 AB2 ASP B 12 TYR B 28 1 17 HELIX 12 AB3 PRO B 29 ASN B 34 5 6 HELIX 13 AB4 PHE B 35 VAL B 39 5 5 HELIX 14 AB5 SER B 42 MET B 49 1 8 HELIX 15 AB6 MET B 49 ALA B 70 1 22 HELIX 16 AB7 LEU B 76 MET B 86 1 11 HELIX 17 AB8 LYS B 87 SER B 90 5 4 HELIX 18 AB9 THR B 93 ALA B 110 1 18 HELIX 19 AC1 ASP B 116 ALA B 134 1 19 LINK NE2 HIS A 89 FE HEM A 201 1555 1555 2.33 LINK NE2 HIS B 89 FE HEM B 201 1555 1555 2.32 LINK FE HEM B 201 O HOH B 304 1555 1555 2.58 CRYST1 58.451 66.792 67.951 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017108 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014716 0.00000